Wall clock time and date at job start Tue Mar 31 2020 05:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35719 * 117.00076 * 2 1 4 4 C 1.39185 * 119.86128 * 0.02562 * 3 2 1 5 5 C 1.37545 * 120.24068 * 179.97438 * 4 3 2 6 6 C 1.39857 * 119.96403 * 359.97438 * 5 4 3 7 7 C 1.47300 * 120.13538 * 179.97438 * 6 5 4 8 8 O 1.21619 * 119.99470 * 180.02562 * 7 6 5 9 9 N 1.34769 * 119.99866 * 0.02562 * 7 6 5 10 10 S 1.65606 * 119.99958 * 179.97438 * 9 7 6 11 11 O 1.42090 * 104.27777 * 181.07141 * 10 9 7 12 12 O 1.42105 * 104.27831 * 308.93289 * 10 9 7 13 13 C 1.81406 * 104.44577 * 65.00188 * 10 9 7 14 14 C 1.50707 * 109.46817 * 180.02562 * 13 10 9 15 15 H 1.07994 * 120.00012 * 359.97438 * 14 13 10 16 16 C 1.37876 * 119.99696 * 179.97438 * 14 13 10 17 17 N 1.31513 * 120.00123 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99922 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46797 * 60.00684 * 18 16 14 20 20 H 1.48496 * 109.47105 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47451 * 300.00417 * 18 16 14 22 22 C 1.40295 * 119.72656 * 0.02562 * 6 5 4 23 23 O 1.35658 * 120.11862 * 179.97438 * 22 6 5 24 24 C 1.42903 * 117.00276 * 179.97438 * 23 22 6 25 25 C 1.38438 * 119.76304 * 0.24995 * 22 6 5 26 26 H 1.09001 * 109.47229 * 299.99939 * 1 2 3 27 27 H 1.08997 * 109.47299 * 59.99538 * 1 2 3 28 28 H 1.08995 * 109.47500 * 179.97438 * 1 2 3 29 29 H 1.08004 * 119.88222 * 359.97438 * 4 3 2 30 30 H 1.08004 * 120.01722 * 179.97438 * 5 4 3 31 31 H 0.97003 * 120.00778 * 0.02562 * 9 7 6 32 32 H 1.08997 * 109.47150 * 299.99543 * 13 10 9 33 33 H 1.08995 * 109.47421 * 59.99896 * 13 10 9 34 34 H 0.97002 * 119.99899 * 179.97438 * 17 16 14 35 35 H 1.09002 * 109.47382 * 179.97438 * 24 23 22 36 36 H 1.09001 * 109.46938 * 59.99682 * 24 23 22 37 37 H 1.09004 * 109.46926 * 299.99803 * 24 23 22 38 38 H 1.08004 * 119.98377 * 179.73025 * 25 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 1.2843 2.3747 0.0005 5 6 1.9006 3.6044 0.0011 6 6 3.2968 3.6859 0.0016 7 6 3.9608 5.0008 0.0016 8 8 5.1751 5.0687 0.0016 9 7 3.2226 6.1284 0.0016 10 16 3.9691 7.6066 0.0023 11 8 2.8981 8.5400 0.0278 12 8 4.8992 7.5291 1.0739 13 6 4.8364 7.6764 -1.5895 14 6 5.5634 8.9911 -1.7082 15 1 5.5088 9.7126 -0.9066 16 6 6.2982 9.2727 -2.8404 17 7 6.3643 8.3942 -3.8168 18 14 7.1988 10.9026 -2.9879 19 1 8.1821 11.0266 -1.8820 20 1 7.9098 10.9592 -4.2903 21 1 6.2211 12.0174 -2.9083 22 6 4.0623 2.5102 0.0011 23 8 5.4171 2.5800 0.0011 24 6 6.1306 1.3419 0.0011 25 6 3.4302 1.2786 -0.0052 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 0.2060 2.3134 0.0005 30 1 1.3067 4.5064 0.0011 31 1 2.2541 6.0742 0.0020 32 1 5.5541 6.8582 -1.6484 33 1 4.1144 7.5854 -2.4010 34 1 6.8809 8.5925 -4.6135 35 1 7.2024 1.5401 0.0006 36 1 5.8667 0.7705 -0.8889 37 1 5.8668 0.7706 0.8911 38 1 4.0161 0.3713 -0.0101 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821583664.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:22 Heat of formation + Delta-G solvation = -152.201784 kcal Electronic energy + Delta-G solvation = -25996.631995 eV Core-core repulsion = 21932.830838 eV Total energy + Delta-G solvation = -4063.801157 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.98434 -39.58389 -38.86061 -36.65620 -36.11914 -35.08680 -33.98525 -33.28948 -31.14250 -30.34412 -28.98413 -27.76973 -27.39930 -24.07585 -23.45389 -22.42368 -21.19224 -19.42259 -18.81858 -17.94897 -17.26244 -16.91486 -16.55036 -16.30135 -16.16767 -15.77851 -15.51612 -15.33162 -15.03723 -14.68853 -14.43088 -14.11350 -14.05212 -13.33914 -12.99381 -12.85818 -12.70058 -12.47245 -12.08159 -11.82164 -11.78564 -11.74448 -11.41793 -11.34222 -11.21676 -11.11232 -10.92995 -10.84093 -10.60263 -10.34972 -9.91035 -9.72282 -9.08760 -8.93007 -8.64683 -8.37201 -6.27018 -4.38034 0.68072 1.10378 1.13158 2.70862 2.74558 3.13918 3.26399 3.28563 3.30891 3.35555 3.62985 4.26827 4.33446 4.45922 4.64540 4.67950 4.71492 4.75316 4.85003 4.95535 5.05626 5.06014 5.07225 5.13844 5.24177 5.25083 5.41551 5.45767 5.67038 5.87160 5.96166 6.17317 6.67296 6.86018 6.88600 7.07908 7.23310 7.47603 7.80075 7.98404 8.62981 9.28695 10.84755 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.018574 B = 0.003295 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.114305 B = 8495.995055 C = 9096.273937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.313 6.313 3 C 0.194 3.806 4 C -0.255 4.255 5 C -0.002 4.002 6 C -0.210 4.210 7 C 0.581 3.419 8 O -0.469 6.469 9 N -1.061 6.061 10 S 2.556 3.444 11 O -0.971 6.971 12 O -0.952 6.952 13 C -0.404 4.404 14 C -0.534 4.534 15 H 0.070 0.930 16 C 0.077 3.923 17 N -0.877 5.877 18 Si 0.906 3.094 19 H -0.269 1.269 20 H -0.282 1.282 21 H -0.269 1.269 22 C 0.230 3.770 23 O -0.272 6.272 24 C 0.019 3.981 25 C -0.258 4.258 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.101 0.899 29 H 0.137 0.863 30 H 0.140 0.860 31 H 0.419 0.581 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.269 0.731 35 H 0.106 0.894 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.865 -19.428 5.347 23.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.225 6.225 3 C 0.147 3.853 4 C -0.274 4.274 5 C -0.020 4.020 6 C -0.216 4.216 7 C 0.368 3.632 8 O -0.340 6.340 9 N -0.821 5.821 10 S 2.659 3.341 11 O -0.962 6.962 12 O -0.942 6.942 13 C -0.541 4.541 14 C -0.574 4.574 15 H 0.088 0.912 16 C -0.129 4.129 17 N -0.513 5.513 18 Si 0.732 3.268 19 H -0.194 1.194 20 H -0.207 1.207 21 H -0.194 1.194 22 C 0.180 3.820 23 O -0.181 6.181 24 C -0.076 4.076 25 C -0.278 4.278 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.120 0.880 29 H 0.155 0.845 30 H 0.158 0.842 31 H 0.254 0.746 32 H 0.118 0.882 33 H 0.103 0.897 34 H 0.078 0.922 35 H 0.125 0.875 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.730 -18.872 5.934 22.505 hybrid contribution -0.345 0.206 -0.747 0.848 sum -11.075 -18.666 5.188 22.316 Atomic orbital electron populations 1.23152 0.77696 1.04251 1.01924 1.86035 1.22002 1.26884 1.87600 1.18885 0.91499 0.84238 0.90641 1.21040 1.00446 0.91665 1.14225 1.20961 0.92125 0.97955 0.91006 1.19205 0.93090 0.91578 1.17699 1.17695 0.86803 0.83796 0.74918 1.91032 1.12093 1.86667 1.44164 1.55414 1.19944 1.25162 1.81583 1.07034 0.74956 0.71498 0.80661 1.93509 1.55076 1.58673 1.88933 1.93529 1.63544 1.83959 1.53172 1.27598 1.08405 1.07063 1.11015 1.20253 1.32997 0.99027 1.05118 0.91206 1.24915 0.95394 0.97734 0.94874 1.69956 1.39567 1.34882 1.06890 0.86410 0.79969 0.82628 0.77805 1.19374 1.20715 1.19435 1.18671 0.83428 0.91585 0.88272 1.86455 1.13915 1.31997 1.85764 1.23242 0.97722 0.85300 1.01332 1.20321 0.92650 0.97492 1.17305 0.92161 0.92106 0.88018 0.84482 0.84225 0.74621 0.88198 0.89724 0.92156 0.87548 0.92290 0.92386 0.83790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.80 101.05 0.99 1.11 16 2 O -0.31 -2.79 10.48 -18.86 -0.20 -2.98 16 3 C 0.19 1.99 6.69 -39.07 -0.26 1.73 16 4 C -0.25 -2.36 9.01 -39.48 -0.36 -2.71 16 5 C 0.00 -0.02 9.52 -39.23 -0.37 -0.39 16 6 C -0.21 -3.09 5.89 -104.83 -0.62 -3.71 16 7 C 0.58 10.80 7.49 -12.58 -0.09 10.70 16 8 O -0.47 -10.66 13.25 -24.12 -0.32 -10.97 16 9 N -1.06 -18.38 5.55 30.40 0.17 -18.21 16 10 S 2.56 57.68 5.03 -107.50 -0.54 57.14 16 11 O -0.97 -22.68 18.08 -57.54 -1.04 -23.72 16 12 O -0.95 -24.59 17.04 -64.79 -1.10 -25.70 16 13 C -0.40 -10.40 5.64 36.01 0.20 -10.20 16 14 C -0.53 -15.33 9.13 -34.44 -0.31 -15.65 16 15 H 0.07 1.94 7.71 -52.49 -0.40 1.54 16 16 C 0.08 2.20 5.46 -17.82 -0.10 2.10 16 17 N -0.88 -25.59 13.29 55.43 0.74 -24.85 16 18 Si 0.91 21.51 29.54 -169.99 -5.02 16.49 16 19 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 22 C 0.23 3.26 6.69 -38.73 -0.26 3.00 16 23 O -0.27 -4.16 8.56 -40.60 -0.35 -4.51 16 24 C 0.02 0.19 9.81 101.05 0.99 1.18 16 25 C -0.26 -2.91 8.96 -39.34 -0.35 -3.27 16 26 H 0.06 0.24 7.65 -51.93 -0.40 -0.16 16 27 H 0.06 0.25 7.65 -51.93 -0.40 -0.15 16 28 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.14 0.85 6.27 -52.48 -0.33 0.52 16 30 H 0.14 1.11 6.39 -52.48 -0.34 0.77 16 31 H 0.42 5.28 6.81 -34.47 -0.23 5.05 16 32 H 0.10 2.71 7.19 -51.93 -0.37 2.34 16 33 H 0.08 2.09 8.14 -51.93 -0.42 1.67 16 34 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.48 7.65 -51.93 -0.40 0.08 16 37 H 0.06 0.46 7.67 -51.93 -0.40 0.06 16 38 H 0.14 1.33 6.29 -52.48 -0.33 1.00 16 LS Contribution 340.24 15.07 5.13 5.13 Total: -1.00 -38.91 340.24 -7.08 -45.98 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -4.00 Total: 2.31 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: -0.54 Total: -16.10 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: 0.91 Total: -43.06 kcal Atomic # 8 Polarization: -64.87 SS G_CDS: -3.01 Total: -67.88 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: 57.68 SS G_CDS: -0.54 Total: 57.14 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -38.91 -7.08 -45.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821583664.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.219 kcal (2) G-P(sol) polarization free energy of solvation -38.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds