Wall clock time and date at job start Tue Mar 31 2020 05:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35997 * 116.99844 * 2 1 4 4 C 1.38966 * 119.90598 * 0.02700 * 3 2 1 5 5 C 1.38033 * 120.33702 * 179.97438 * 4 3 2 6 6 C 1.38672 * 120.14699 * 0.02562 * 5 4 3 7 7 O 1.35732 * 120.09725 * 180.27560 * 6 5 4 8 8 C 1.42899 * 116.99595 * 359.72250 * 7 6 5 9 9 C 1.40095 * 119.81096 * 359.97438 * 6 5 4 10 10 C 1.47539 * 120.16256 * 180.02562 * 9 6 5 11 11 O 1.21585 * 120.00606 * 359.97438 * 10 9 6 12 12 N 1.34780 * 119.99588 * 180.02562 * 10 9 6 13 13 S 1.65601 * 119.99702 * 180.02562 * 12 10 9 14 14 O 1.42099 * 104.27583 * 181.06869 * 13 12 10 15 15 O 1.42096 * 104.27774 * 308.92196 * 13 12 10 16 16 C 1.81398 * 104.45176 * 64.99683 * 13 12 10 17 17 C 1.50694 * 109.47172 * 179.97438 * 16 13 12 18 18 H 1.08001 * 120.00294 * 0.02562 * 17 16 13 19 19 C 1.37872 * 120.00148 * 179.97438 * 17 16 13 20 20 N 1.31516 * 120.00101 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 120.00281 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46841 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47193 * 120.00128 * 21 19 17 24 24 H 1.48496 * 109.47081 * 240.00387 * 21 19 17 25 25 C 1.38230 * 119.90884 * 180.02562 * 3 2 1 26 26 H 1.09000 * 109.47158 * 59.99646 * 1 2 3 27 27 H 1.08999 * 109.46923 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47095 * 299.99588 * 1 2 3 29 29 H 1.07996 * 119.83123 * 359.97438 * 4 3 2 30 30 H 1.07999 * 119.92266 * 180.02562 * 5 4 3 31 31 H 1.09000 * 109.47586 * 300.00076 * 8 7 6 32 32 H 1.09001 * 109.47075 * 60.00051 * 8 7 6 33 33 H 1.09000 * 109.47287 * 180.02562 * 8 7 6 34 34 H 0.97004 * 120.00218 * 359.97438 * 12 10 9 35 35 H 1.08997 * 109.47125 * 299.99759 * 16 13 12 36 36 H 1.08999 * 109.46706 * 59.99937 * 16 13 12 37 37 H 0.97002 * 119.99866 * 179.97438 * 20 19 17 38 38 H 1.08004 * 120.07433 * 0.05114 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2876 2.3760 0.0006 5 6 1.9049 3.6105 0.0011 6 6 3.2889 3.6971 0.0005 7 8 3.8949 4.9116 0.0067 8 6 3.0452 6.0605 0.0075 9 6 4.0599 2.5274 0.0000 10 6 5.5330 2.6105 -0.0001 11 8 6.0808 3.6959 0.0000 12 7 6.2715 1.4830 -0.0011 13 16 7.9248 1.5762 -0.0005 14 8 8.3522 0.2213 -0.0276 15 8 8.2264 2.4610 -1.0708 16 6 8.3346 2.3411 1.5925 17 6 9.8302 2.4806 1.7129 18 1 10.4703 2.1432 0.9111 19 6 10.3814 3.0398 2.8461 20 7 9.6020 3.4512 3.8223 21 14 12.2355 3.2133 2.9951 22 1 12.8827 2.6781 1.7704 23 1 12.5872 4.6471 3.1551 24 1 12.7104 2.4521 4.1783 25 6 3.4269 1.2819 -0.0005 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 0.2094 2.3145 0.0006 30 1 1.3087 4.5110 0.0020 31 1 2.4192 6.0501 -0.8848 32 1 2.4129 6.0442 0.8951 33 1 3.6554 6.9637 0.0122 34 1 5.8345 0.6170 -0.0015 35 1 7.8715 3.3261 1.6523 36 1 7.9620 1.7146 2.4028 37 1 9.9899 3.8443 4.6197 38 1 4.0149 0.3760 -0.0018 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821584187.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:06 Heat of formation + Delta-G solvation = -149.740368 kcal Electronic energy + Delta-G solvation = -26055.562855 eV Core-core repulsion = 21991.868432 eV Total energy + Delta-G solvation = -4063.694422 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.95339 -39.47439 -38.89384 -36.49640 -36.11885 -35.09346 -34.06648 -33.29312 -31.55967 -30.03951 -28.98940 -27.68911 -27.11540 -24.42543 -23.46846 -22.40896 -21.18304 -19.40217 -18.68369 -17.88151 -17.29983 -17.01073 -16.66714 -16.26702 -16.14319 -15.76112 -15.53147 -15.08742 -14.87254 -14.71396 -14.45248 -14.12211 -14.03111 -13.48663 -13.09645 -12.85822 -12.63858 -12.49365 -12.08889 -11.84556 -11.82959 -11.79200 -11.39665 -11.24657 -11.21632 -11.11174 -10.88942 -10.66119 -10.59324 -10.38008 -9.93531 -9.71662 -9.41456 -9.09492 -8.66054 -8.00632 -6.27435 -4.38209 0.51347 1.11558 1.15889 2.66633 2.92582 3.16039 3.24718 3.25571 3.31993 3.38747 3.58748 4.21952 4.30552 4.34295 4.61650 4.70713 4.76371 4.78944 4.81235 4.96657 5.03618 5.04606 5.08593 5.14554 5.23427 5.33349 5.41158 5.42943 5.53690 5.84795 5.91660 6.13060 6.66538 6.84968 7.00027 7.06927 7.27026 7.48213 7.79368 7.90514 8.63124 9.28644 10.84416 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.016337 B = 0.003509 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.488175 B = 7976.725905 C = 8751.237679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.315 6.315 3 C 0.079 3.921 4 C -0.136 4.136 5 C -0.182 4.182 6 C 0.158 3.842 7 O -0.277 6.277 8 C 0.022 3.978 9 C -0.134 4.134 10 C 0.579 3.421 11 O -0.461 6.461 12 N -1.059 6.059 13 S 2.555 3.445 14 O -0.969 6.969 15 O -0.951 6.951 16 C -0.405 4.405 17 C -0.533 4.533 18 H 0.071 0.929 19 C 0.077 3.923 20 N -0.877 5.877 21 Si 0.907 3.093 22 H -0.265 1.265 23 H -0.277 1.277 24 H -0.278 1.278 25 C -0.074 4.074 26 H 0.054 0.946 27 H 0.100 0.900 28 H 0.054 0.946 29 H 0.136 0.864 30 H 0.140 0.860 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.105 0.895 34 H 0.422 0.578 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.268 0.732 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.107 -1.686 -5.360 23.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.229 6.229 3 C 0.035 3.965 4 C -0.155 4.155 5 C -0.201 4.201 6 C 0.110 3.890 7 O -0.188 6.188 8 C -0.074 4.074 9 C -0.140 4.140 10 C 0.365 3.635 11 O -0.331 6.331 12 N -0.820 5.820 13 S 2.658 3.342 14 O -0.960 6.960 15 O -0.942 6.942 16 C -0.542 4.542 17 C -0.573 4.573 18 H 0.089 0.911 19 C -0.130 4.130 20 N -0.513 5.513 21 Si 0.733 3.267 22 H -0.190 1.190 23 H -0.203 1.203 24 H -0.204 1.204 25 C -0.094 4.094 26 H 0.073 0.927 27 H 0.119 0.881 28 H 0.073 0.927 29 H 0.153 0.847 30 H 0.157 0.843 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.123 0.877 34 H 0.257 0.743 35 H 0.118 0.882 36 H 0.104 0.896 37 H 0.077 0.923 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -21.902 -1.219 -5.956 22.730 hybrid contribution -0.282 0.068 0.764 0.817 sum -22.184 -1.151 -5.192 22.813 Atomic orbital electron populations 1.23055 0.78464 1.04077 1.01180 1.86111 1.21214 1.26125 1.89441 1.18617 0.91794 0.84548 1.01581 1.21207 1.00243 0.91545 1.02540 1.21022 0.92783 0.98777 1.07479 1.18941 0.90436 0.85588 0.94032 1.86437 1.34240 1.11370 1.86787 1.23176 0.95859 0.87430 1.00894 1.19079 0.92829 0.91146 1.10919 1.17714 0.87008 0.83544 0.75188 1.91035 1.72422 1.26123 1.43518 1.55447 1.30447 1.14806 1.81263 1.07084 0.71281 0.75185 0.80696 1.93516 1.78137 1.35413 1.88903 1.93528 1.80601 1.66777 1.53260 1.27613 1.06611 1.08941 1.11019 1.20334 0.87266 1.44596 1.05058 0.91069 1.24925 0.99359 0.93811 0.94886 1.69976 1.35556 1.38879 1.06856 0.86280 0.83502 0.78246 0.78685 1.18956 1.20311 1.20362 1.20401 0.91918 0.96889 1.00153 0.92741 0.88143 0.92690 0.84672 0.84251 0.92724 0.92613 0.87713 0.74350 0.88203 0.89630 0.92263 0.83687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.31 -3.04 10.49 -19.73 -0.21 -3.24 16 3 C 0.08 0.84 6.68 -39.31 -0.26 0.58 16 4 C -0.14 -1.22 9.02 -39.39 -0.36 -1.57 16 5 C -0.18 -1.80 9.02 -39.50 -0.36 -2.16 16 6 C 0.16 2.18 6.70 -38.73 -0.26 1.92 16 7 O -0.28 -4.18 8.56 -40.82 -0.35 -4.53 16 8 C 0.02 0.20 9.81 101.05 0.99 1.19 16 9 C -0.13 -2.00 5.88 -104.86 -0.62 -2.62 16 10 C 0.58 10.84 7.50 -12.47 -0.09 10.75 16 11 O -0.46 -10.43 13.25 -24.10 -0.32 -10.75 16 12 N -1.06 -18.73 5.55 30.46 0.17 -18.57 16 13 S 2.56 58.13 5.03 -107.50 -0.54 57.59 16 14 O -0.97 -22.88 18.08 -57.54 -1.04 -23.92 16 15 O -0.95 -24.63 17.03 -64.80 -1.10 -25.74 16 16 C -0.40 -10.45 5.64 36.00 0.20 -10.25 16 17 C -0.53 -15.31 9.13 -34.44 -0.31 -15.62 16 18 H 0.07 1.99 7.71 -52.49 -0.40 1.59 16 19 C 0.08 2.18 5.46 -17.82 -0.10 2.08 16 20 N -0.88 -25.56 13.29 55.43 0.74 -24.82 16 21 Si 0.91 21.54 29.54 -169.99 -5.02 16.52 16 22 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 C -0.07 -0.90 9.47 -39.03 -0.37 -1.27 16 26 H 0.05 0.23 7.65 -51.93 -0.40 -0.16 16 27 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.24 7.65 -51.93 -0.40 -0.15 16 29 H 0.14 0.78 6.27 -52.49 -0.33 0.45 16 30 H 0.14 0.97 6.29 -52.49 -0.33 0.64 16 31 H 0.05 0.39 7.67 -51.93 -0.40 -0.01 16 32 H 0.06 0.42 7.65 -51.93 -0.40 0.02 16 33 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.42 5.62 6.82 -34.47 -0.24 5.39 16 35 H 0.10 2.70 7.19 -51.93 -0.37 2.33 16 36 H 0.09 2.12 8.14 -51.92 -0.42 1.70 16 37 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.15 1.47 6.40 -52.48 -0.34 1.13 16 LS Contribution 340.32 15.07 5.13 5.13 Total: -1.00 -38.65 340.32 -7.09 -45.74 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -4.00 Total: 2.42 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: -0.54 Total: -15.82 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: 0.91 Total: -43.39 kcal Atomic # 8 Polarization: -65.16 SS G_CDS: -3.02 Total: -68.18 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 58.13 SS G_CDS: -0.54 Total: 57.59 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -38.65 -7.09 -45.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821584187.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.000 kcal (2) G-P(sol) polarization free energy of solvation -38.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds