Wall clock time and date at job start Tue Mar 31 2020 05:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36001 * 116.99598 * 2 1 4 4 C 1.38476 * 120.00647 * 359.97438 * 3 2 1 5 5 C 1.38491 * 120.33649 * 179.97438 * 4 3 2 6 6 C 1.37798 * 120.34300 * 359.78758 * 5 4 3 7 7 C 1.39754 * 119.99886 * 0.46461 * 6 5 4 8 8 C 1.47556 * 120.16362 * 179.78962 * 7 6 5 9 9 O 1.21587 * 119.99731 * 179.72954 * 8 7 6 10 10 N 1.34772 * 119.99758 * 359.72369 * 8 7 6 11 11 S 1.65608 * 119.99575 * 180.02562 * 10 8 7 12 12 O 1.42102 * 104.27363 * 181.07197 * 11 10 8 13 13 O 1.42097 * 104.27711 * 308.92812 * 11 10 8 14 14 C 1.81401 * 104.44945 * 65.00158 * 11 10 8 15 15 C 1.50697 * 109.47140 * 179.97438 * 14 11 10 16 16 H 1.08003 * 119.99880 * 359.97438 * 15 14 11 17 17 C 1.37874 * 119.99890 * 180.02562 * 15 14 11 18 18 N 1.31514 * 120.00170 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99892 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.46985 * 359.97438 * 19 17 15 21 21 H 1.48506 * 109.47069 * 119.99563 * 19 17 15 22 22 H 1.48495 * 109.47032 * 239.99810 * 19 17 15 23 23 C 1.39137 * 120.00538 * 179.97438 * 3 2 1 24 24 O 1.35744 * 120.16751 * 0.02562 * 23 3 2 25 25 C 1.42894 * 117.00278 * 269.97967 * 24 23 3 26 26 H 1.08993 * 109.47332 * 299.99650 * 1 2 3 27 27 H 1.09005 * 109.46930 * 60.00240 * 1 2 3 28 28 H 1.09002 * 109.46880 * 179.97438 * 1 2 3 29 29 H 1.08003 * 119.83206 * 0.02562 * 4 3 2 30 30 H 1.07998 * 119.83244 * 180.02562 * 5 4 3 31 31 H 1.08001 * 119.99787 * 180.23595 * 6 5 4 32 32 H 0.96999 * 120.00250 * 0.02562 * 10 8 7 33 33 H 1.08996 * 109.47000 * 300.00248 * 14 11 10 34 34 H 1.09006 * 109.46904 * 59.99979 * 14 11 10 35 35 H 0.97004 * 119.99856 * 180.02562 * 18 17 15 36 36 H 1.09005 * 109.47395 * 180.02562 * 25 24 23 37 37 H 1.09006 * 109.47127 * 299.99642 * 25 24 23 38 38 H 1.09001 * 109.47215 * 59.99743 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2922 2.3732 -0.0005 5 6 1.9138 3.6108 0.0000 6 6 3.2889 3.6992 0.0055 7 6 4.0638 2.5362 0.0007 8 6 5.5366 2.6266 0.0019 9 8 6.2079 1.6129 0.0027 10 7 6.1376 3.8329 0.0019 11 16 7.7906 3.9344 0.0025 12 8 8.0560 5.3301 0.0282 13 8 8.1930 3.0924 1.0741 14 6 8.2885 3.2208 -1.5892 15 6 9.7903 3.2577 -1.7084 16 1 10.3857 3.6696 -0.9070 17 6 10.4042 2.7666 -2.8411 18 7 9.6792 2.2655 -3.8172 19 14 12.2658 2.8116 -2.9886 20 1 12.8449 3.4195 -1.7636 21 1 12.7834 1.4288 -3.1476 22 1 12.6491 3.6228 -4.1718 23 6 3.4358 1.2849 0.0005 24 8 4.1787 0.1487 0.0005 25 6 4.5336 -0.3944 1.2737 26 1 -0.3633 0.5137 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 0.2139 2.3136 -0.0005 30 1 1.3177 4.5114 0.0000 31 1 3.7678 4.6672 0.0097 32 1 5.6021 4.6417 0.0015 33 1 7.9442 2.1884 -1.6481 34 1 7.8457 3.7984 -2.4007 35 1 10.1111 1.9196 -4.6139 36 1 5.1253 -1.2986 1.1309 37 1 5.1183 0.3377 1.8308 38 1 3.6284 -0.6363 1.8307 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821584279.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:26 Heat of formation + Delta-G solvation = -148.087478 kcal Electronic energy + Delta-G solvation = -26356.813329 eV Core-core repulsion = 22293.190581 eV Total energy + Delta-G solvation = -4063.622748 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.00043 -39.52774 -37.96405 -37.07950 -36.21174 -35.16358 -34.11944 -33.31680 -30.95404 -30.33381 -29.02104 -27.69520 -26.79869 -24.31738 -23.48014 -22.52773 -21.24116 -19.36854 -18.85917 -17.53571 -17.37600 -16.95982 -16.65730 -16.27695 -16.19320 -15.67065 -15.30704 -15.04014 -14.80375 -14.79292 -14.48633 -14.43746 -14.13248 -13.44056 -12.88586 -12.71557 -12.52118 -12.30231 -12.12544 -11.92087 -11.86011 -11.45666 -11.42638 -11.30716 -11.27888 -11.18795 -10.90679 -10.63234 -10.47202 -10.14355 -9.83323 -9.72171 -9.19519 -9.12887 -8.67945 -8.45094 -6.29114 -4.40550 0.44183 0.98716 1.04485 2.58003 2.82077 3.21870 3.23617 3.30678 3.35220 3.37247 3.80727 4.21027 4.30230 4.47289 4.58592 4.66675 4.79662 4.80438 4.85765 4.97202 5.04928 5.13749 5.20500 5.24613 5.27916 5.39221 5.55766 5.77874 5.86223 5.88672 6.00680 6.18365 6.62352 6.81025 6.87625 7.01430 7.45271 7.54219 7.75349 7.80061 8.60736 9.26640 10.82593 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.019071 B = 0.003480 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.845945 B = 8044.041182 C = 8606.656197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.303 6.303 3 C 0.099 3.901 4 C -0.172 4.172 5 C -0.094 4.094 6 C -0.106 4.106 7 C -0.123 4.123 8 C 0.576 3.424 9 O -0.461 6.461 10 N -1.057 6.057 11 S 2.554 3.446 12 O -0.968 6.968 13 O -0.951 6.951 14 C -0.403 4.403 15 C -0.535 4.535 16 H 0.071 0.929 17 C 0.077 3.923 18 N -0.875 5.875 19 Si 0.907 3.093 20 H -0.266 1.266 21 H -0.277 1.277 22 H -0.278 1.278 23 C 0.133 3.867 24 O -0.307 6.307 25 C 0.047 3.953 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.102 0.898 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.422 0.578 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.268 0.732 36 H 0.097 0.903 37 H 0.051 0.949 38 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.998 -0.121 7.205 23.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.216 6.216 3 C 0.053 3.947 4 C -0.191 4.191 5 C -0.112 4.112 6 C -0.125 4.125 7 C -0.128 4.128 8 C 0.362 3.638 9 O -0.331 6.331 10 N -0.817 5.817 11 S 2.656 3.344 12 O -0.959 6.959 13 O -0.942 6.942 14 C -0.540 4.540 15 C -0.574 4.574 16 H 0.089 0.911 17 C -0.130 4.130 18 N -0.511 5.511 19 Si 0.733 3.267 20 H -0.190 1.190 21 H -0.203 1.203 22 H -0.203 1.203 23 C 0.086 3.914 24 O -0.223 6.223 25 C -0.046 4.046 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.120 0.880 29 H 0.155 0.845 30 H 0.155 0.845 31 H 0.155 0.845 32 H 0.257 0.743 33 H 0.118 0.882 34 H 0.104 0.896 35 H 0.078 0.922 36 H 0.115 0.885 37 H 0.070 0.930 38 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -20.871 -0.916 7.657 22.250 hybrid contribution -0.030 0.479 -0.601 0.769 sum -20.901 -0.437 7.056 22.064 Atomic orbital electron populations 1.23122 0.78382 1.04258 1.01299 1.86207 1.21194 1.25694 1.88511 1.19304 0.91234 0.85306 0.98896 1.21347 1.00372 0.91821 1.05595 1.20874 0.94130 0.97327 0.98887 1.21208 0.93961 0.97335 0.99951 1.20146 0.93396 0.93236 1.06054 1.17799 0.87953 0.82807 0.75235 1.91030 1.65206 1.33605 1.43267 1.55460 1.31206 1.14005 1.81076 1.07153 0.71413 0.75033 0.80763 1.93518 1.81530 1.31931 1.88931 1.93525 1.78601 1.68792 1.53260 1.27604 1.06645 1.08974 1.10798 1.20318 0.87185 1.44762 1.05150 0.91085 1.24926 0.99527 0.93640 0.94869 1.69975 1.36058 1.38179 1.06892 0.86281 0.83482 0.78268 0.78675 1.18977 1.20269 1.20348 1.17978 0.86425 0.86443 1.00539 1.86047 1.69714 1.37040 1.29502 1.22928 0.98939 0.99135 0.83644 0.92626 0.92464 0.87991 0.84501 0.84534 0.84534 0.74329 0.88150 0.89638 0.92198 0.88471 0.93039 0.94160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 101.05 0.99 1.14 16 2 O -0.30 -3.43 10.28 -34.29 -0.35 -3.78 16 3 C 0.10 1.19 6.69 -39.16 -0.26 0.93 16 4 C -0.17 -1.52 9.03 -39.40 -0.36 -1.87 16 5 C -0.09 -0.78 10.02 -39.65 -0.40 -1.18 16 6 C -0.11 -1.10 9.53 -39.18 -0.37 -1.48 16 7 C -0.12 -1.79 5.88 -104.87 -0.62 -2.41 16 8 C 0.58 10.40 7.50 -12.46 -0.09 10.31 16 9 O -0.46 -10.06 12.10 -24.09 -0.29 -10.35 16 10 N -1.06 -17.79 5.55 30.46 0.17 -17.62 16 11 S 2.55 56.35 5.03 -107.50 -0.54 55.81 16 12 O -0.97 -22.24 18.08 -57.54 -1.04 -23.28 16 13 O -0.95 -23.84 17.04 -64.79 -1.10 -24.94 16 14 C -0.40 -10.26 5.64 36.00 0.20 -10.06 16 15 C -0.53 -15.20 9.13 -34.44 -0.31 -15.51 16 16 H 0.07 1.97 7.71 -52.48 -0.40 1.56 16 17 C 0.08 2.18 5.46 -17.82 -0.10 2.08 16 18 N -0.88 -25.48 13.29 55.43 0.74 -24.75 16 19 Si 0.91 21.43 29.54 -169.99 -5.02 16.41 16 20 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 C 0.13 2.00 5.75 -38.58 -0.22 1.78 16 24 O -0.31 -5.26 8.62 -47.54 -0.41 -5.67 16 25 C 0.05 0.67 10.49 101.05 1.06 1.73 16 26 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 27 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 28 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.14 0.78 6.27 -52.48 -0.33 0.45 16 30 H 0.14 0.69 8.06 -52.49 -0.42 0.26 16 31 H 0.14 1.06 6.40 -52.49 -0.34 0.72 16 32 H 0.42 5.16 6.82 -34.48 -0.24 4.92 16 33 H 0.10 2.70 7.19 -51.93 -0.37 2.32 16 34 H 0.09 2.10 8.14 -51.92 -0.42 1.68 16 35 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.05 0.78 7.50 -51.93 -0.39 0.39 16 38 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 341.92 15.07 5.15 5.15 Total: -1.00 -38.11 341.92 -7.29 -45.40 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -4.11 Total: 2.17 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: -0.48 Total: -14.55 kcal Atomic # 7 Polarization: -43.28 SS G_CDS: 0.91 Total: -42.37 kcal Atomic # 8 Polarization: -64.82 SS G_CDS: -3.20 Total: -68.02 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 56.35 SS G_CDS: -0.54 Total: 55.81 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -38.11 -7.29 -45.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821584279.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.685 kcal (2) G-P(sol) polarization free energy of solvation -38.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds