Wall clock time and date at job start Tue Mar 31 2020 04:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00217 * 2 1 4 4 H 1.48498 * 109.46985 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46687 * 300.00181 * 3 2 1 6 6 H 1.48502 * 109.46968 * 59.99815 * 3 2 1 7 7 C 1.38813 * 119.99808 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99969 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00234 * 0.02562 * 7 2 1 10 10 S 1.65598 * 120.00442 * 180.02562 * 9 7 2 11 11 O 1.42104 * 106.40094 * 311.45878 * 10 9 7 12 12 O 1.42099 * 106.40732 * 178.54267 * 10 9 7 13 13 C 1.76201 * 107.21845 * 64.99584 * 10 9 7 14 14 C 1.38339 * 119.87687 * 269.98375 * 13 10 9 15 15 C 1.38014 * 120.14755 * 179.97438 * 14 13 10 16 16 C 1.39307 * 119.88908 * 0.02562 * 15 14 13 17 17 C 1.48454 * 120.12218 * 179.97438 * 16 15 14 18 18 N 1.34049 * 126.67235 * 359.68469 * 17 16 15 19 19 N 1.28992 * 107.26786 * 179.89083 * 18 17 16 20 20 N 1.28727 * 108.94095 * 0.37478 * 19 18 17 21 21 H 0.97002 * 125.34044 * 179.79504 * 20 19 18 22 22 N 1.28877 * 109.31968 * 359.76031 * 20 19 18 23 23 C 1.39390 * 119.75740 * 0.02562 * 16 15 14 24 24 Cl 1.73600 * 120.07693 * 179.97438 * 23 16 15 25 25 C 1.38180 * 119.85430 * 359.97438 * 23 16 15 26 26 H 0.96998 * 119.99813 * 359.97438 * 1 2 3 27 27 H 0.97005 * 119.99987 * 359.97438 * 9 7 2 28 28 H 1.08005 * 119.93027 * 0.02562 * 14 13 10 29 29 H 1.07999 * 120.05228 * 179.97438 * 15 14 13 30 30 H 1.07995 * 119.95420 * 180.27412 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 16 2.1535 -3.8222 0.0018 11 8 3.1365 -3.7190 -1.0191 12 8 1.1740 -4.8511 0.0362 13 6 3.0292 -3.9176 1.5278 14 6 4.3137 -3.4120 1.6180 15 6 5.0045 -3.4832 2.8107 16 6 4.4064 -4.0663 3.9256 17 6 5.1450 -4.1463 5.2109 18 7 6.3894 -3.7079 5.4478 19 7 6.6566 -3.9632 6.6836 20 7 5.6407 -4.5449 7.2192 21 1 5.5865 -4.8438 8.1404 22 7 4.7067 -4.6671 6.3396 23 6 3.1124 -4.5754 3.8296 24 17 2.3594 -5.3044 5.2135 25 6 2.4302 -4.4986 2.6304 26 1 -0.4850 0.8400 0.0004 27 1 0.3555 -2.3881 0.0005 28 1 4.7767 -2.9596 0.7535 29 1 6.0074 -3.0884 2.8793 30 1 1.4259 -4.8885 2.5554 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822810102.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:02 Heat of formation + Delta-G solvation = 76.095938 kcal Electronic energy + Delta-G solvation = -22781.026948 eV Core-core repulsion = 18960.754000 eV Total energy + Delta-G solvation = -3820.272948 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 329.014 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.59046 -39.17209 -36.37656 -36.13726 -34.78399 -34.77430 -34.55367 -33.72585 -31.11521 -30.89507 -30.50167 -24.99748 -24.77383 -24.65499 -22.51474 -21.87721 -19.37595 -18.71565 -18.29556 -17.51772 -17.28528 -16.66070 -16.09438 -15.51181 -14.79882 -14.64807 -14.33500 -14.18848 -13.73102 -13.64688 -13.52277 -12.90393 -12.32368 -12.07544 -11.65137 -11.53867 -11.46236 -11.44906 -11.37975 -11.18381 -11.12417 -11.08350 -10.94957 -10.69528 -10.58647 -10.41298 -10.13886 -10.00898 -8.96582 -8.68371 -8.41443 -6.63811 -4.02231 0.38685 1.00940 1.27723 1.43191 2.05907 2.14879 2.16815 3.11374 3.17582 3.20645 3.48647 3.53678 3.96619 4.00810 4.36526 4.69582 4.81493 4.99405 5.06764 5.20453 5.24553 5.36281 5.44995 5.73331 5.87751 6.03447 6.15940 6.24081 6.36434 6.74946 6.89673 7.32494 7.98692 8.51287 8.62850 9.06927 10.50892 Molecular weight = 329.01amu Principal moments of inertia in cm(-1) A = 0.013915 B = 0.004279 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.770048 B = 6541.466850 C = 7380.139409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.032 3.968 3 Si 0.924 3.076 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.279 1.279 7 C -0.266 4.266 8 H 0.109 0.891 9 N -0.937 5.937 10 S 2.591 3.409 11 O -0.966 6.966 12 O -0.998 6.998 13 C -0.627 4.627 14 C -0.021 4.021 15 C -0.089 4.089 16 C 0.016 3.984 17 C 0.214 3.786 18 N -0.261 5.261 19 N -0.053 5.053 20 N -0.231 5.231 21 H 0.474 0.526 22 N -0.269 5.269 23 C -0.029 4.029 24 Cl -0.047 7.047 25 C -0.021 4.021 26 H 0.277 0.723 27 H 0.412 0.588 28 H 0.152 0.848 29 H 0.147 0.853 30 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.334 -5.851 12.165 15.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.177 4.177 3 Si 0.750 3.250 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.205 1.205 7 C -0.408 4.408 8 H 0.126 0.874 9 N -0.688 5.688 10 S 2.681 3.319 11 O -0.955 6.955 12 O -0.987 6.987 13 C -0.705 4.705 14 C -0.041 4.041 15 C -0.110 4.110 16 C 0.012 3.988 17 C -0.066 4.066 18 N -0.135 5.135 19 N -0.049 5.049 20 N -0.077 5.077 21 H 0.328 0.672 22 N -0.121 5.121 23 C -0.059 4.059 24 Cl -0.018 7.018 25 C -0.040 4.040 26 H 0.087 0.913 27 H 0.247 0.753 28 H 0.170 0.830 29 H 0.165 0.835 30 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 7.925 -6.560 12.124 15.900 hybrid contribution -0.322 0.774 1.480 1.701 sum 7.602 -5.786 13.604 16.623 Atomic orbital electron populations 1.69699 1.06146 1.28709 1.46039 1.25340 0.95700 0.99798 0.96879 0.85887 0.79871 0.81054 0.78178 1.18733 1.20248 1.20461 1.19507 0.92498 0.82949 1.45881 0.87373 1.52047 1.17256 1.19518 1.79994 1.07848 0.73260 0.74043 0.76723 1.93478 1.61063 1.86905 1.54098 1.93418 1.59542 1.57921 1.87818 1.32619 1.07428 1.05748 1.24718 1.21015 0.92137 0.93229 0.97674 1.21288 1.00789 0.97901 0.91047 1.17202 0.91420 1.01600 0.88581 1.23558 0.90606 0.98757 0.93681 1.76081 1.12940 1.19232 1.05224 1.78882 1.12794 1.10137 1.03041 1.47883 1.07287 1.37885 1.14638 0.67178 1.75417 1.15859 1.21573 0.99203 1.20973 0.93181 1.01538 0.90184 1.98371 1.81241 1.81065 1.41091 1.20722 0.99854 0.94376 0.89085 0.91260 0.75257 0.83039 0.83515 0.83116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.58 13.06 55.49 0.72 -20.86 16 2 C 0.03 0.77 5.50 -17.43 -0.10 0.67 16 3 Si 0.92 18.49 29.55 -169.99 -5.02 13.47 16 4 H -0.26 -5.08 7.11 56.52 0.40 -4.67 16 5 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 6 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 7 C -0.27 -6.22 9.63 -15.06 -0.15 -6.36 16 8 H 0.11 2.36 7.82 -52.48 -0.41 1.95 16 9 N -0.94 -21.03 5.75 31.50 0.18 -20.85 16 10 S 2.59 53.76 5.70 -107.50 -0.61 53.15 16 11 O -0.97 -21.88 16.97 -57.17 -0.97 -22.85 16 12 O -1.00 -22.20 17.27 -57.17 -0.99 -23.19 16 13 C -0.63 -11.39 5.89 -39.53 -0.23 -11.62 16 14 C -0.02 -0.35 9.51 -39.63 -0.38 -0.73 16 15 C -0.09 -1.33 9.70 -39.27 -0.38 -1.71 16 16 C 0.02 0.25 5.88 -104.86 -0.62 -0.36 16 17 C 0.21 3.06 7.86 -156.31 -1.23 1.84 16 18 N -0.26 -3.66 12.23 32.15 0.39 -3.26 16 19 N -0.05 -0.62 13.47 60.35 0.81 0.19 16 20 N -0.23 -2.11 7.90 60.35 0.48 -1.64 16 21 H 0.47 1.90 8.96 -340.37 -3.05 -1.15 16 22 N -0.27 -3.33 9.76 32.17 0.31 -3.02 16 23 C -0.03 -0.46 6.34 -39.17 -0.25 -0.71 16 24 Cl -0.05 -0.66 26.21 -51.86 -1.36 -2.02 16 25 C -0.02 -0.35 9.29 -39.59 -0.37 -0.72 16 26 H 0.28 6.49 8.31 -40.82 -0.34 6.15 16 27 H 0.41 9.40 8.02 -34.47 -0.28 9.13 16 28 H 0.15 2.31 7.61 -52.48 -0.40 1.91 16 29 H 0.15 1.86 7.89 -52.49 -0.41 1.44 16 30 H 0.15 2.46 7.61 -52.49 -0.40 2.06 16 LS Contribution 305.03 15.07 4.60 4.60 Total: -1.00 -30.30 305.03 -9.23 -39.53 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -4.08 Total: 6.47 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: -3.69 Total: -19.72 kcal Atomic # 7 Polarization: -52.34 SS G_CDS: 2.90 Total: -49.44 kcal Atomic # 8 Polarization: -44.08 SS G_CDS: -1.96 Total: -46.04 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.02 Total: 13.47 kcal Atomic # 16 Polarization: 53.76 SS G_CDS: -0.61 Total: 53.15 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.36 Total: -2.02 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.30 -9.23 -39.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822810102.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.627 kcal (2) G-P(sol) polarization free energy of solvation -30.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds