Wall clock time and date at job start Tue Mar 31 2020 04:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 120.00203 * 2 1 4 4 H 1.48501 * 109.47025 * 269.99637 * 3 2 1 5 5 H 1.48493 * 109.46912 * 30.00042 * 3 2 1 6 6 H 1.48497 * 109.46923 * 150.00002 * 3 2 1 7 7 C 1.38814 * 119.99579 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99949 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00046 * 359.97438 * 7 2 1 10 10 S 1.65599 * 119.99723 * 173.20807 * 9 7 2 11 11 O 1.42103 * 106.40423 * 310.63937 * 10 9 7 12 12 O 1.42108 * 106.40193 * 177.72299 * 10 9 7 13 13 C 1.76196 * 107.22084 * 64.18147 * 10 9 7 14 14 C 1.38052 * 120.05410 * 242.44567 * 13 10 9 15 15 C 1.38301 * 120.14538 * 179.72123 * 14 13 10 16 16 C 1.38311 * 120.24887 * 0.55059 * 15 14 13 17 17 C 1.38130 * 120.10589 * 359.72700 * 16 15 14 18 18 Cl 1.73602 * 120.07597 * 179.97438 * 17 16 15 19 19 C 1.39270 * 120.05115 * 62.72062 * 13 10 9 20 20 C 1.48443 * 120.12332 * 0.02562 * 19 13 10 21 21 N 1.34047 * 126.67946 * 353.52239 * 20 19 13 22 22 N 1.28988 * 107.27339 * 179.97438 * 21 20 19 23 23 N 1.28731 * 108.93911 * 0.02562 * 22 21 20 24 24 H 0.96998 * 125.33825 * 179.97438 * 23 22 21 25 25 N 1.28868 * 109.32441 * 359.72252 * 23 22 21 26 26 H 0.96998 * 119.99478 * 0.02562 * 1 2 3 27 27 H 0.96996 * 120.00454 * 353.21322 * 9 7 2 28 28 H 1.07999 * 119.92601 * 359.97065 * 14 13 10 29 29 H 1.08000 * 119.87611 * 180.27946 * 15 14 13 30 30 H 1.08000 * 119.94900 * 179.69898 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 16 2.1447 -3.8171 -0.1708 11 8 3.0030 -3.6566 -1.2918 12 8 1.1732 -4.8501 -0.0774 13 6 3.1910 -3.9895 1.2363 14 6 4.5616 -4.0338 1.0775 15 6 5.3849 -4.1633 2.1812 16 6 4.8405 -4.2604 3.4489 17 6 3.4703 -4.2229 3.6193 18 17 2.7878 -4.3455 5.2109 19 6 2.6363 -4.0869 2.5101 20 6 1.1630 -4.0464 2.6862 21 7 0.2495 -3.8007 1.7364 22 7 -0.9108 -3.8573 2.2971 23 7 -0.7582 -4.1255 3.5469 24 1 -1.4764 -4.2223 4.1917 25 7 0.4979 -4.2506 3.8060 26 1 -0.4849 0.8401 -0.0004 27 1 0.3606 -2.3910 0.0991 28 1 4.9920 -3.9633 0.0895 29 1 6.4568 -4.1930 2.0522 30 1 5.4878 -4.3662 4.3070 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822810810.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:57 Heat of formation + Delta-G solvation = 106.973768 kcal Electronic energy + Delta-G solvation = -24300.813267 eV Core-core repulsion = 20481.879283 eV Total energy + Delta-G solvation = -3818.933984 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 329.014 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.04751 -39.14822 -36.33656 -36.03675 -34.63118 -34.58392 -33.88337 -33.29306 -30.94626 -30.79948 -30.29983 -24.75215 -24.42042 -24.21745 -22.65781 -21.55448 -19.07402 -18.39054 -18.00977 -17.36336 -16.74679 -16.41789 -15.91386 -15.43852 -14.79001 -14.54312 -14.26622 -14.09535 -13.62562 -13.47871 -13.29781 -12.43488 -11.96250 -11.78905 -11.64826 -11.56311 -11.24099 -11.16974 -11.07089 -10.89386 -10.86884 -10.72033 -10.59516 -10.50791 -10.31277 -10.11751 -9.96050 -9.74747 -9.02643 -8.53827 -8.12872 -6.34318 -3.77617 0.64982 1.03492 1.59817 1.65452 2.16168 2.57884 2.63300 3.22680 3.27666 3.28830 3.59968 3.84175 4.13180 4.40220 4.56239 4.77406 4.88996 5.11198 5.24125 5.29882 5.43366 5.52300 5.63220 5.77389 5.97063 6.13114 6.25951 6.38402 6.70471 6.73323 7.15138 7.64108 8.52825 8.85991 8.94362 9.40371 10.81033 Molecular weight = 329.01amu Principal moments of inertia in cm(-1) A = 0.011530 B = 0.006678 C = 0.006137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.950191 B = 4191.936453 C = 4561.422866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.033 3.967 3 Si 0.918 3.082 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.281 4.281 8 H 0.099 0.901 9 N -0.928 5.928 10 S 2.626 3.374 11 O -0.975 6.975 12 O -0.975 6.975 13 C -0.619 4.619 14 C -0.028 4.028 15 C -0.116 4.116 16 C -0.081 4.081 17 C -0.030 4.030 18 Cl -0.046 7.046 19 C 0.093 3.907 20 C 0.189 3.811 21 N -0.224 5.224 22 N -0.035 5.035 23 N -0.237 5.237 24 H 0.471 0.529 25 N -0.271 5.271 26 H 0.271 0.729 27 H 0.418 0.582 28 H 0.152 0.848 29 H 0.140 0.860 30 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.035 -6.718 10.213 13.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.175 4.175 3 Si 0.744 3.256 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.420 4.420 8 H 0.117 0.883 9 N -0.684 5.684 10 S 2.711 3.289 11 O -0.964 6.964 12 O -0.963 6.963 13 C -0.697 4.697 14 C -0.047 4.047 15 C -0.136 4.136 16 C -0.100 4.100 17 C -0.060 4.060 18 Cl -0.017 7.017 19 C 0.088 3.912 20 C -0.091 4.091 21 N -0.098 5.098 22 N -0.030 5.030 23 N -0.081 5.081 24 H 0.325 0.675 25 N -0.123 5.123 26 H 0.081 0.919 27 H 0.257 0.743 28 H 0.169 0.831 29 H 0.158 0.842 30 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 4.376 -7.287 9.514 12.758 hybrid contribution 0.264 1.032 1.713 2.017 sum 4.640 -6.254 11.226 13.663 Atomic orbital electron populations 1.69739 1.05797 1.27792 1.48323 1.25154 0.95578 0.99058 0.97671 0.86072 0.79232 0.81602 0.78661 1.20052 1.20942 1.19480 1.19291 0.91957 0.83422 1.47340 0.88312 1.51756 1.17305 1.17530 1.81788 1.05704 0.72968 0.74066 0.76190 1.93471 1.68272 1.86902 1.47785 1.93468 1.58636 1.57081 1.87103 1.32521 1.10631 1.08545 1.18026 1.21067 0.91165 0.92096 1.00396 1.21381 1.00553 0.99842 0.91775 1.21098 0.92194 0.98104 0.98595 1.20940 0.93417 1.05414 0.86192 1.98371 1.84909 1.96185 1.22232 1.16435 0.84844 0.98172 0.91791 1.23430 0.95845 1.03621 0.86195 1.76147 0.94206 1.15054 1.24386 1.78956 1.19101 1.13525 0.91468 1.47793 1.06380 1.44834 1.09132 0.67526 1.75139 0.91065 1.21043 1.25077 0.91901 0.74277 0.83054 0.84241 0.84212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.76 13.07 55.49 0.73 -23.04 16 2 C 0.03 0.85 5.50 -17.43 -0.10 0.75 16 3 Si 0.92 20.07 29.55 -169.99 -5.02 15.05 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 6 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.28 -7.27 9.63 -15.06 -0.15 -7.41 16 8 H 0.10 2.40 7.82 -52.48 -0.41 1.99 16 9 N -0.93 -23.33 4.58 31.50 0.14 -23.18 16 10 S 2.63 60.53 4.87 -107.50 -0.52 60.01 16 11 O -0.97 -23.73 16.70 -57.17 -0.95 -24.68 16 12 O -0.97 -23.75 15.11 -57.17 -0.86 -24.62 16 13 C -0.62 -12.19 5.83 -39.27 -0.23 -12.42 16 14 C -0.03 -0.46 9.54 -39.63 -0.38 -0.84 16 15 C -0.12 -1.49 10.04 -39.53 -0.40 -1.88 16 16 C -0.08 -1.05 9.82 -39.59 -0.39 -1.44 16 17 C -0.03 -0.48 6.34 -39.17 -0.25 -0.73 16 18 Cl -0.05 -0.66 26.24 -51.86 -1.36 -2.02 16 19 C 0.09 1.78 5.88 -104.86 -0.62 1.16 16 20 C 0.19 3.79 7.50 -156.30 -1.17 2.61 16 21 N -0.22 -4.88 5.61 32.15 0.18 -4.70 16 22 N -0.03 -0.65 13.47 60.35 0.81 0.16 16 23 N -0.24 -3.44 7.90 60.35 0.48 -2.97 16 24 H 0.47 4.11 8.96 -340.38 -3.05 1.05 16 25 N -0.27 -4.57 9.81 32.17 0.32 -4.25 16 26 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 27 H 0.42 10.93 6.52 -34.47 -0.22 10.71 16 28 H 0.15 2.28 7.34 -52.49 -0.39 1.89 16 29 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 30 H 0.14 1.34 8.06 -52.49 -0.42 0.91 16 LS Contribution 293.37 15.07 4.42 4.42 Total: -1.00 -33.33 293.37 -9.37 -42.70 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -4.05 Total: 7.32 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: -3.67 Total: -20.20 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: 2.65 Total: -57.98 kcal Atomic # 8 Polarization: -47.48 SS G_CDS: -1.82 Total: -49.30 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Atomic # 16 Polarization: 60.53 SS G_CDS: -0.52 Total: 60.01 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.36 Total: -2.02 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -33.33 -9.37 -42.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822810810.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.675 kcal (2) G-P(sol) polarization free energy of solvation -33.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds