Wall clock time and date at job start Tue Mar 31 2020 04:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 119.99818 * 2 1 4 4 H 1.48500 * 109.47210 * 239.99550 * 3 2 1 5 5 H 1.48503 * 109.47442 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47173 * 119.99612 * 3 2 1 7 7 C 1.38813 * 120.00170 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99950 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99909 * 0.02562 * 7 2 1 10 10 S 1.65602 * 119.99798 * 179.97438 * 9 7 2 11 11 O 1.42099 * 106.40241 * 311.45865 * 10 9 7 12 12 O 1.42103 * 106.40006 * 178.53918 * 10 9 7 13 13 C 1.76197 * 107.21666 * 64.99878 * 10 9 7 14 14 C 1.38348 * 119.92802 * 90.00119 * 13 10 9 15 15 C 1.38264 * 120.25556 * 180.02562 * 14 13 10 16 16 C 1.38189 * 120.10112 * 359.96946 * 15 14 13 17 17 Cl 1.73599 * 120.07228 * 180.02562 * 16 15 14 18 18 C 1.39393 * 119.84921 * 0.28686 * 16 15 14 19 19 C 1.48451 * 120.11889 * 179.71904 * 18 16 15 20 20 N 1.34050 * 126.67247 * 179.68602 * 19 18 16 21 21 N 1.28985 * 107.27045 * 179.83778 * 20 19 18 22 22 N 1.28729 * 108.94097 * 0.42822 * 21 20 19 23 23 H 0.97004 * 125.34209 * 179.72453 * 22 21 20 24 24 N 1.28878 * 109.32267 * 359.72926 * 22 21 20 25 25 C 1.38001 * 119.92990 * 269.97489 * 13 10 9 26 26 H 0.96999 * 120.00124 * 0.02562 * 1 2 3 27 27 H 0.96994 * 119.99799 * 359.97438 * 9 7 2 28 28 H 1.08001 * 119.87679 * 359.97438 * 14 13 10 29 29 H 1.08003 * 119.95361 * 179.97438 * 15 14 13 30 30 H 1.08003 * 120.05448 * 0.02562 * 25 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 16 2.1537 -3.8222 0.0005 11 8 3.1359 -3.7184 -1.0211 12 8 1.1742 -4.8511 0.0353 13 6 3.0305 -3.9181 1.5259 14 6 2.4329 -4.4991 2.6301 15 6 3.1145 -4.5775 3.8305 16 6 4.3980 -4.0757 3.9328 17 17 5.2534 -4.1751 5.4401 18 6 5.0022 -3.4846 2.8244 19 6 6.3784 -2.9380 2.9292 20 7 7.0833 -2.3510 1.9517 21 7 8.2247 -2.0164 2.4507 22 7 8.2624 -2.3762 3.6861 23 1 9.0125 -2.2434 4.2866 24 7 7.1471 -2.9405 4.0001 25 6 4.3120 -3.4141 1.6163 26 1 -0.4850 0.8400 -0.0004 27 1 0.3557 -2.3880 0.0005 28 1 1.4298 -4.8922 2.5545 29 1 2.6432 -5.0317 4.6896 30 1 4.7771 -2.9608 0.7534 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822811016.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:00 Heat of formation + Delta-G solvation = 76.621445 kcal Electronic energy + Delta-G solvation = -23054.129687 eV Core-core repulsion = 19233.879527 eV Total energy + Delta-G solvation = -3820.250160 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 329.014 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.44489 -39.19291 -36.48812 -36.13325 -34.74969 -34.72952 -34.42826 -33.61199 -31.08464 -30.91080 -30.49071 -24.85038 -24.66298 -24.53065 -22.68690 -21.88052 -19.34033 -18.52181 -18.22385 -17.51062 -17.14618 -16.61606 -15.99502 -15.56485 -15.00232 -14.60802 -14.33015 -14.12732 -13.68719 -13.67824 -13.45287 -12.56410 -12.45985 -12.04202 -11.66828 -11.66456 -11.38609 -11.32928 -11.31391 -11.14381 -11.06462 -11.01599 -10.92054 -10.64029 -10.56791 -10.41517 -10.09807 -10.01607 -8.95299 -8.73662 -8.37116 -6.59044 -3.98189 0.55658 1.00532 1.21281 1.47769 1.99510 2.21923 2.29576 3.17223 3.19110 3.23457 3.52200 3.61130 4.00825 4.13081 4.40557 4.72611 4.79454 5.02211 5.03272 5.14362 5.37010 5.50214 5.51890 5.70799 5.91116 5.98237 6.10005 6.32384 6.37457 6.73517 6.94558 7.37354 8.13749 8.56095 8.67188 9.11514 10.55652 Molecular weight = 329.01amu Principal moments of inertia in cm(-1) A = 0.011457 B = 0.005201 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.346071 B = 5382.648915 C = 6500.729359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.034 3.966 3 Si 0.921 3.079 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.271 1.271 7 C -0.268 4.268 8 H 0.107 0.893 9 N -0.938 5.938 10 S 2.596 3.404 11 O -0.965 6.965 12 O -0.999 6.999 13 C -0.657 4.657 14 C 0.006 3.994 15 C -0.139 4.139 16 C 0.028 3.972 17 Cl -0.045 7.045 18 C -0.040 4.040 19 C 0.220 3.780 20 N -0.258 5.258 21 N -0.051 5.051 22 N -0.234 5.234 23 H 0.473 0.527 24 N -0.278 5.278 25 C 0.033 3.967 26 H 0.277 0.723 27 H 0.411 0.589 28 H 0.150 0.850 29 H 0.143 0.857 30 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.065 -4.450 10.853 15.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.175 4.175 3 Si 0.747 3.253 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.196 1.196 7 C -0.410 4.410 8 H 0.125 0.875 9 N -0.689 5.689 10 S 2.685 3.315 11 O -0.954 6.954 12 O -0.988 6.988 13 C -0.735 4.735 14 C -0.014 4.014 15 C -0.159 4.159 16 C -0.001 4.001 17 Cl -0.016 7.016 18 C -0.045 4.045 19 C -0.060 4.060 20 N -0.131 5.131 21 N -0.047 5.047 22 N -0.079 5.079 23 H 0.327 0.673 24 N -0.130 5.130 25 C 0.012 3.988 26 H 0.088 0.912 27 H 0.247 0.753 28 H 0.167 0.833 29 H 0.161 0.839 30 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 10.829 -4.874 10.174 15.637 hybrid contribution 0.414 1.007 1.701 2.019 sum 11.242 -3.868 11.875 16.804 Atomic orbital electron populations 1.69679 1.06062 1.28801 1.46363 1.25290 0.95666 0.99660 0.96905 0.86054 0.79158 0.80513 0.79556 1.19159 1.20581 1.19632 1.19402 0.92443 0.82964 1.46182 0.87528 1.51968 1.17182 1.19458 1.80325 1.07596 0.73239 0.73935 0.76688 1.93489 1.61031 1.86835 1.54087 1.93413 1.59632 1.57910 1.87866 1.32471 1.06900 1.08188 1.25906 1.21053 0.99303 0.90870 0.90157 1.21089 0.92714 1.02640 0.99434 1.21068 0.93514 0.98555 0.86989 1.98381 1.76544 1.96383 1.30275 1.17173 0.88473 1.04255 0.94569 1.23452 0.96594 1.00193 0.85745 1.76163 0.98084 1.13706 1.25116 1.78909 1.15817 1.16102 0.93831 1.47850 1.13644 1.36739 1.09670 0.67332 1.75340 0.94679 1.17539 1.25397 1.20980 0.91577 0.90420 0.95832 0.91246 0.75278 0.83266 0.83909 0.82436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.95 13.06 55.49 0.72 -21.22 16 2 C 0.03 0.83 5.50 -17.43 -0.10 0.73 16 3 Si 0.92 19.21 29.55 -169.99 -5.02 14.19 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.37 16 6 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.27 -6.46 9.63 -15.06 -0.15 -6.60 16 8 H 0.11 2.46 7.82 -52.49 -0.41 2.05 16 9 N -0.94 -21.38 5.75 31.50 0.18 -21.20 16 10 S 2.60 54.64 5.70 -107.50 -0.61 54.03 16 11 O -0.96 -22.61 16.98 -57.17 -0.97 -23.58 16 12 O -1.00 -22.06 17.27 -57.17 -0.99 -23.04 16 13 C -0.66 -12.06 5.89 -39.63 -0.23 -12.30 16 14 C 0.01 0.10 9.51 -39.53 -0.38 -0.28 16 15 C -0.14 -1.94 9.82 -39.59 -0.39 -2.33 16 16 C 0.03 0.42 6.34 -39.17 -0.25 0.17 16 17 Cl -0.05 -0.58 26.21 -51.86 -1.36 -1.94 16 18 C -0.04 -0.66 5.88 -104.86 -0.62 -1.28 16 19 C 0.22 3.50 7.86 -156.30 -1.23 2.27 16 20 N -0.26 -4.24 12.23 32.15 0.39 -3.84 16 21 N -0.05 -0.69 13.47 60.35 0.81 0.12 16 22 N -0.23 -2.41 7.90 60.35 0.48 -1.93 16 23 H 0.47 2.34 8.96 -340.36 -3.05 -0.71 16 24 N -0.28 -3.67 9.76 32.17 0.31 -3.36 16 25 C 0.03 0.60 9.17 -39.27 -0.36 0.24 16 26 H 0.28 6.63 8.31 -40.82 -0.34 6.29 16 27 H 0.41 9.45 8.02 -34.47 -0.28 9.17 16 28 H 0.15 2.11 7.61 -52.49 -0.40 1.71 16 29 H 0.14 1.53 8.06 -52.48 -0.42 1.10 16 30 H 0.16 2.91 7.44 -52.48 -0.39 2.52 16 LS Contribution 305.04 15.07 4.60 4.60 Total: -1.00 -30.91 305.04 -9.23 -40.14 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -4.09 Total: 6.42 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: -3.69 Total: -19.38 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: 2.90 Total: -51.43 kcal Atomic # 8 Polarization: -44.66 SS G_CDS: -1.96 Total: -46.62 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.02 Total: 14.19 kcal Atomic # 16 Polarization: 54.64 SS G_CDS: -0.61 Total: 54.03 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.36 Total: -1.94 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.91 -9.23 -40.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822811016.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.761 kcal (2) G-P(sol) polarization free energy of solvation -30.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds