Wall clock time and date at job start Tue Mar 31 2020 04:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00041 * 2 1 4 4 H 1.48508 * 109.46996 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47344 * 299.99805 * 3 2 1 6 6 H 1.48497 * 109.47466 * 60.00109 * 3 2 1 7 7 C 1.38813 * 120.00066 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00407 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99654 * 0.02562 * 7 2 1 10 10 S 1.65599 * 119.99602 * 185.06865 * 9 7 2 11 11 O 1.42103 * 106.39990 * 176.97329 * 10 9 7 12 12 O 1.42103 * 106.40384 * 309.89232 * 10 9 7 13 13 C 1.76199 * 107.21931 * 63.43330 * 10 9 7 14 14 C 1.38316 * 119.89080 * 244.40704 * 13 10 9 15 15 C 1.38011 * 120.13568 * 179.97438 * 14 13 10 16 16 C 1.39323 * 119.90423 * 359.97438 * 15 14 13 17 17 C 1.48467 * 120.10963 * 179.97438 * 16 15 14 18 18 N 1.34048 * 126.67314 * 359.68094 * 17 16 15 19 19 N 1.28986 * 107.27100 * 179.89597 * 18 17 16 20 20 N 1.28731 * 108.93835 * 0.38013 * 19 18 17 21 21 H 0.97004 * 125.34118 * 179.78564 * 20 19 18 22 22 N 1.28865 * 109.32000 * 359.75756 * 20 19 18 23 23 C 1.39260 * 119.78082 * 0.02562 * 16 15 14 24 24 C 1.38168 * 119.86731 * 359.74567 * 23 16 15 25 25 Cl 1.73600 * 119.95632 * 180.27476 * 24 23 16 26 26 H 0.97003 * 120.00228 * 359.97438 * 1 2 3 27 27 H 0.96996 * 120.00320 * 5.33311 * 9 7 2 28 28 H 1.08003 * 119.92855 * 359.95069 * 14 13 10 29 29 H 1.07997 * 120.04850 * 179.97438 * 15 14 13 30 30 H 1.08002 * 120.06194 * 180.02562 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3254 -2.3881 0.0005 10 16 2.1486 -3.8194 0.1279 11 8 1.1659 -4.8450 0.1700 12 8 3.1841 -3.7746 -0.8442 13 6 2.9426 -3.8262 1.7008 14 6 4.3238 -3.8339 1.7757 15 6 4.9510 -3.8387 3.0050 16 6 4.1909 -3.8354 4.1726 17 6 4.8609 -3.8412 5.4975 18 7 6.1816 -3.8557 5.7267 19 7 6.3483 -3.8537 7.0057 20 7 5.1949 -3.8467 7.5774 21 1 5.0436 -3.8468 8.5356 22 7 4.2729 -3.8390 6.6771 23 6 2.8006 -3.8277 4.0929 24 6 2.1823 -3.8181 2.8573 25 17 0.4494 -3.8013 2.7552 26 1 -0.4850 0.8400 0.0004 27 1 0.3587 -2.3899 -0.0779 28 1 4.9125 -3.8364 0.8702 29 1 6.0295 -3.8451 3.0618 30 1 2.2070 -3.8247 4.9951 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826382123.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:55 Heat of formation + Delta-G solvation = 75.939888 kcal Electronic energy + Delta-G solvation = -22935.217487 eV Core-core repulsion = 19114.937772 eV Total energy + Delta-G solvation = -3820.279714 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 329.014 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.66983 -39.11307 -36.37330 -35.85723 -34.73424 -34.64517 -34.56691 -33.74607 -31.09858 -30.79310 -30.54285 -25.08704 -24.75802 -24.62452 -22.45440 -21.88838 -19.43403 -18.61186 -18.24137 -17.48248 -17.35045 -16.56956 -16.13051 -15.47146 -14.71979 -14.63033 -14.23830 -14.06490 -13.74112 -13.62738 -13.39924 -12.87526 -12.36697 -12.03693 -11.82561 -11.60494 -11.52337 -11.38969 -11.20042 -11.14528 -10.96830 -10.92957 -10.80973 -10.70467 -10.54387 -10.36528 -10.02582 -9.91985 -8.94661 -8.60460 -8.38406 -6.63886 -3.98651 0.40845 0.95310 1.31291 1.52319 1.99994 2.11792 2.31611 3.11965 3.17827 3.21574 3.48267 3.59986 3.97370 4.01225 4.40765 4.70372 4.87156 4.98846 5.03893 5.13377 5.23127 5.38771 5.60621 5.78174 5.90893 6.04248 6.12682 6.28365 6.33799 6.76565 6.96568 7.33852 7.92114 8.55196 8.64733 9.11629 10.49999 Molecular weight = 329.01amu Principal moments of inertia in cm(-1) A = 0.013161 B = 0.004613 C = 0.004131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.028803 B = 6068.936954 C = 6776.195315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.034 3.966 3 Si 0.922 3.078 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.253 4.253 8 H 0.109 0.891 9 N -0.928 5.928 10 S 2.567 3.433 11 O -0.991 6.991 12 O -0.972 6.972 13 C -0.628 4.628 14 C -0.023 4.023 15 C -0.098 4.098 16 C 0.017 3.983 17 C 0.223 3.777 18 N -0.263 5.263 19 N -0.050 5.050 20 N -0.228 5.228 21 H 0.476 0.524 22 N -0.289 5.289 23 C -0.097 4.097 24 C 0.052 3.948 25 Cl -0.037 7.037 26 H 0.278 0.722 27 H 0.413 0.587 28 H 0.154 0.846 29 H 0.143 0.857 30 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.295 -4.013 12.698 14.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.177 4.177 3 Si 0.748 3.252 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.204 1.204 7 C -0.399 4.399 8 H 0.126 0.874 9 N -0.678 5.678 10 S 2.657 3.343 11 O -0.979 6.979 12 O -0.962 6.962 13 C -0.706 4.706 14 C -0.042 4.042 15 C -0.119 4.119 16 C 0.014 3.986 17 C -0.057 4.057 18 N -0.136 5.136 19 N -0.046 5.046 20 N -0.074 5.074 21 H 0.330 0.670 22 N -0.140 5.140 23 C -0.118 4.118 24 C 0.024 3.976 25 Cl -0.007 7.007 26 H 0.088 0.912 27 H 0.249 0.751 28 H 0.172 0.828 29 H 0.161 0.839 30 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 6.827 -4.831 12.612 15.132 hybrid contribution -0.485 1.169 1.361 1.858 sum 6.342 -3.662 13.973 15.776 Atomic orbital electron populations 1.69707 1.06159 1.28745 1.45081 1.25392 0.95677 0.99856 0.96775 0.85911 0.79974 0.81089 0.78195 1.18738 1.20215 1.20420 1.19572 0.92574 0.82973 1.44735 0.87377 1.52036 1.18513 1.20321 1.76970 1.09268 0.73445 0.75123 0.76436 1.93438 1.58749 1.58266 1.87445 1.93442 1.58238 1.87365 1.57137 1.32419 1.04567 1.08570 1.25042 1.20925 0.92258 0.92577 0.98401 1.21334 1.00686 0.98885 0.90964 1.17152 0.91886 1.02955 0.86656 1.23632 0.87663 1.01504 0.92899 1.76096 1.15411 1.17474 1.04619 1.78909 1.09045 1.14801 1.01811 1.47729 1.01405 1.46064 1.12168 0.67014 1.74968 1.19303 1.21624 0.98117 1.20994 0.93049 1.00602 0.97176 1.20188 0.85913 0.98158 0.93335 1.98436 1.07830 1.96152 1.98309 0.91219 0.75104 0.82827 0.83903 0.83913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.29 13.06 55.49 0.72 -20.57 16 2 C 0.03 0.80 5.50 -17.43 -0.10 0.71 16 3 Si 0.92 18.64 29.55 -169.99 -5.02 13.62 16 4 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 7 C -0.25 -6.06 9.63 -15.06 -0.14 -6.21 16 8 H 0.11 2.47 7.82 -52.49 -0.41 2.06 16 9 N -0.93 -21.59 5.45 31.50 0.17 -21.42 16 10 S 2.57 56.56 5.01 -107.50 -0.54 56.02 16 11 O -0.99 -23.18 16.55 -57.17 -0.95 -24.13 16 12 O -0.97 -22.95 16.69 -57.17 -0.95 -23.90 16 13 C -0.63 -12.15 5.80 -39.49 -0.23 -12.38 16 14 C -0.02 -0.38 9.53 -39.64 -0.38 -0.76 16 15 C -0.10 -1.45 9.70 -39.26 -0.38 -1.83 16 16 C 0.02 0.26 5.88 -104.90 -0.62 -0.36 16 17 C 0.22 3.07 7.94 -156.30 -1.24 1.83 16 18 N -0.26 -3.56 12.23 32.16 0.39 -3.17 16 19 N -0.05 -0.56 13.47 60.35 0.81 0.25 16 20 N -0.23 -1.95 7.90 60.35 0.48 -1.47 16 21 H 0.48 1.60 8.96 -340.37 -3.05 -1.45 16 22 N -0.29 -3.39 12.08 32.17 0.39 -3.00 16 23 C -0.10 -1.53 9.48 -39.23 -0.37 -1.91 16 24 C 0.05 0.96 6.30 -39.54 -0.25 0.71 16 25 Cl -0.04 -0.69 26.43 -51.86 -1.37 -2.06 16 26 H 0.28 6.47 8.31 -40.82 -0.34 6.13 16 27 H 0.41 9.78 8.04 -34.47 -0.28 9.50 16 28 H 0.15 2.39 7.32 -52.48 -0.38 2.01 16 29 H 0.14 1.78 7.89 -52.49 -0.41 1.37 16 30 H 0.14 1.98 7.88 -52.49 -0.41 1.57 16 LS Contribution 305.72 15.07 4.61 4.61 Total: -1.00 -30.37 305.72 -9.05 -39.42 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -4.08 Total: 6.00 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: -3.71 Total: -20.19 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: 2.97 Total: -49.39 kcal Atomic # 8 Polarization: -46.13 SS G_CDS: -1.90 Total: -48.03 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.02 Total: 13.62 kcal Atomic # 16 Polarization: 56.56 SS G_CDS: -0.54 Total: 56.02 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.37 Total: -2.06 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.37 -9.05 -39.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826382123.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.355 kcal (2) G-P(sol) polarization free energy of solvation -30.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds