Wall clock time and date at job start Tue Mar 31 2020 05:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34703 * 116.99582 * 2 1 4 4 O 1.21467 * 120.00384 * 359.97438 * 3 2 1 5 5 C 1.47743 * 119.99732 * 179.97438 * 3 2 1 6 6 C 1.39369 * 120.08019 * 359.97438 * 5 3 2 7 7 C 1.39331 * 119.69931 * 180.02562 * 6 5 3 8 8 C 1.47747 * 120.07241 * 180.02562 * 7 6 5 9 9 O 1.21471 * 119.99541 * 180.02562 * 8 7 6 10 10 O 1.34702 * 120.00454 * 359.97438 * 8 7 6 11 11 C 1.39764 * 119.84822 * 359.73284 * 7 6 5 12 12 C 1.38054 * 120.14822 * 0.53757 * 11 7 6 13 13 S 1.76196 * 119.84471 * 179.73001 * 12 11 7 14 14 O 1.42099 * 106.40063 * 156.19211 * 13 12 11 15 15 O 1.42097 * 106.40586 * 23.26789 * 13 12 11 16 16 N 1.65608 * 107.21621 * 269.73076 * 13 12 11 17 17 C 1.36930 * 119.99959 * 65.00376 * 16 13 12 18 18 H 1.08001 * 120.00576 * 359.97438 * 17 16 13 19 19 C 1.38815 * 120.00134 * 180.02562 * 17 16 13 20 20 N 1.31613 * 119.99706 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00334 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47184 * 59.99502 * 21 19 17 23 23 H 1.48503 * 109.47082 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46789 * 299.99425 * 21 19 17 25 25 C 1.38095 * 120.30648 * 359.45878 * 12 11 7 26 26 H 1.08996 * 109.47429 * 300.00189 * 1 2 3 27 27 H 1.09005 * 109.47057 * 60.00936 * 1 2 3 28 28 H 1.09007 * 109.46904 * 180.02562 * 1 2 3 29 29 H 1.08008 * 120.14907 * 0.02562 * 6 5 3 30 30 H 0.96703 * 116.99997 * 180.02562 * 10 8 7 31 31 H 1.08006 * 119.92552 * 180.27066 * 11 7 6 32 32 H 0.97002 * 119.99894 * 244.99773 * 16 13 12 33 33 H 0.97000 * 120.00455 * 180.02562 * 20 19 17 34 34 H 1.07996 * 119.92159 * 180.24428 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4019 2.2190 -0.0005 5 6 3.5389 1.2776 0.0006 6 6 4.2996 0.1099 0.0017 7 6 5.6905 0.1921 0.0027 8 6 6.5050 -1.0406 0.0033 9 8 7.7175 -0.9673 0.0047 10 8 5.9031 -2.2457 0.0033 11 6 6.3134 1.4432 -0.0029 12 6 5.5538 2.5960 0.0016 13 16 6.3474 4.1691 0.0016 14 8 5.4128 5.0900 -0.5439 15 8 7.6444 3.9643 -0.5416 16 7 6.5669 4.6073 1.5835 17 6 7.4015 3.8771 2.3867 18 1 7.9164 3.0151 1.9889 19 6 7.5851 4.2441 3.7128 20 7 6.9574 5.2943 4.1979 21 14 8.7232 3.2476 4.8089 22 1 10.0947 3.2602 4.2399 23 1 8.7465 3.8426 6.1693 24 1 8.2332 1.8480 4.8886 25 6 4.1748 2.5218 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 3.8132 -0.8545 0.0017 30 1 6.4778 -3.0235 0.0041 31 1 7.3915 1.5084 -0.0065 32 1 6.1043 5.3814 1.9410 33 1 7.0859 5.5511 5.1244 34 1 3.5866 3.4276 0.0001 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831242431.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:26 Heat of formation + Delta-G solvation = -218.059366 kcal Electronic energy + Delta-G solvation = -25742.367736 eV Core-core repulsion = 21539.877685 eV Total energy + Delta-G solvation = -4202.490051 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.054 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.80171 -40.22994 -38.46780 -36.54257 -36.20412 -36.12724 -34.80741 -34.78315 -31.79049 -31.64593 -31.13831 -27.94624 -24.98821 -24.67049 -24.07305 -22.56128 -20.58392 -19.08476 -18.34023 -18.12959 -17.92402 -17.32661 -16.58832 -16.48219 -16.25249 -16.08516 -15.70457 -15.47810 -15.27715 -14.65383 -14.28493 -13.85523 -13.64161 -13.52529 -13.46942 -12.69928 -12.41694 -12.25852 -12.07411 -11.89362 -11.67228 -11.41046 -11.20012 -11.08953 -11.03567 -10.98280 -10.95891 -10.69563 -10.59138 -10.47614 -10.15771 -10.08162 -9.43063 -9.26337 -8.44994 -6.67264 -4.04883 0.46869 0.57459 1.39045 2.04743 2.48014 2.64966 2.84169 3.12582 3.15040 3.18749 3.53305 3.94023 4.31388 4.41086 4.66066 4.74619 4.80881 4.91480 4.95554 4.99692 5.03449 5.18843 5.22774 5.37845 5.48920 5.73734 5.91961 5.99181 6.10104 6.21881 6.33710 6.53176 6.86360 7.29074 7.58092 7.76652 8.48274 8.58674 9.03574 10.46808 Molecular weight = 329.05amu Principal moments of inertia in cm(-1) A = 0.010045 B = 0.004927 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2786.800479 B = 5681.539327 C = 6559.536840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.514 3.486 4 O -0.498 6.498 5 C -0.166 4.166 6 C 0.026 3.974 7 C -0.165 4.165 8 C 0.532 3.468 9 O -0.504 6.504 10 O -0.513 6.513 11 C 0.076 3.924 12 C -0.677 4.677 13 S 2.583 3.417 14 O -0.997 6.997 15 O -0.964 6.964 16 N -0.933 5.933 17 C -0.265 4.265 18 H 0.108 0.892 19 C 0.034 3.966 20 N -0.861 5.861 21 Si 0.925 3.075 22 H -0.266 1.266 23 H -0.280 1.280 24 H -0.270 1.270 25 C 0.073 3.927 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.102 0.898 29 H 0.155 0.845 30 H 0.415 0.585 31 H 0.160 0.840 32 H 0.412 0.588 33 H 0.280 0.720 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.100 -13.422 -4.387 16.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.359 3.641 4 O -0.387 6.387 5 C -0.168 4.168 6 C 0.007 3.993 7 C -0.167 4.167 8 C 0.375 3.625 9 O -0.393 6.393 10 O -0.325 6.325 11 C 0.057 3.943 12 C -0.753 4.753 13 S 2.673 3.327 14 O -0.985 6.985 15 O -0.954 6.954 16 N -0.684 5.684 17 C -0.408 4.408 18 H 0.125 0.875 19 C -0.176 4.176 20 N -0.502 5.502 21 Si 0.750 3.250 22 H -0.191 1.191 23 H -0.205 1.205 24 H -0.195 1.195 25 C 0.054 3.946 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.121 0.879 29 H 0.172 0.828 30 H 0.273 0.727 31 H 0.177 0.823 32 H 0.248 0.752 33 H 0.090 0.910 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -8.086 -12.416 -5.255 15.721 hybrid contribution -0.019 -1.355 1.166 1.788 sum -8.105 -13.771 -4.089 16.494 Atomic orbital electron populations 1.23298 0.75796 1.03751 1.02827 1.86529 1.23717 1.32527 1.84517 1.21009 0.88708 0.81595 0.72830 1.90868 1.66487 1.35859 1.45443 1.19111 0.89347 0.94937 1.13400 1.21839 0.92353 0.98727 0.86382 1.19090 0.93076 0.91245 1.13309 1.20670 0.86085 0.83433 0.72264 1.90932 1.15016 1.87591 1.45734 1.84537 1.45357 1.16574 1.86062 1.21372 1.01623 0.89086 0.82223 1.32617 1.03847 1.25738 1.13088 1.08461 0.74154 0.74117 0.75999 1.93422 1.63671 1.62221 1.79226 1.93483 1.37594 1.86011 1.78281 1.52109 1.50504 1.33302 1.32493 1.19452 1.16251 1.12034 0.93100 0.87472 1.25360 0.98433 0.96808 0.97031 1.69681 1.40360 1.23571 1.16558 0.86003 0.80557 0.79574 0.78865 1.19109 1.20466 1.19511 1.21295 0.93123 0.97436 0.82713 0.91654 0.91720 0.87934 0.82780 0.72666 0.82253 0.75198 0.91030 0.82529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.56 101.05 1.07 1.38 16 2 O -0.36 -4.24 9.81 -40.50 -0.40 -4.64 16 3 C 0.51 7.59 7.90 34.62 0.27 7.86 16 4 O -0.50 -8.53 16.13 -19.24 -0.31 -8.84 16 5 C -0.17 -2.54 5.87 -105.04 -0.62 -3.16 16 6 C 0.03 0.35 9.18 -38.75 -0.36 -0.01 16 7 C -0.17 -2.50 5.87 -105.03 -0.62 -3.12 16 8 C 0.53 7.38 8.27 34.62 0.29 7.67 16 9 O -0.50 -8.45 17.12 -19.24 -0.33 -8.78 16 10 O -0.51 -4.96 12.67 -40.50 -0.51 -5.47 16 11 C 0.08 1.33 9.06 -39.08 -0.35 0.98 16 12 C -0.68 -12.60 5.88 -39.70 -0.23 -12.83 16 13 S 2.58 55.19 5.70 -107.50 -0.61 54.58 16 14 O -1.00 -22.74 17.26 -57.17 -0.99 -23.73 16 15 O -0.96 -22.58 16.96 -57.17 -0.97 -23.55 16 16 N -0.93 -21.39 5.75 31.50 0.18 -21.21 16 17 C -0.26 -6.33 9.63 -15.06 -0.15 -6.47 16 18 H 0.11 2.42 7.82 -52.49 -0.41 2.01 16 19 C 0.03 0.81 5.50 -17.43 -0.10 0.72 16 20 N -0.86 -21.59 13.06 55.49 0.72 -20.87 16 21 Si 0.92 18.79 29.55 -169.99 -5.02 13.77 16 22 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 23 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 24 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 25 C 0.07 1.28 9.06 -39.08 -0.35 0.93 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.10 0.54 8.14 -51.92 -0.42 0.12 16 29 H 0.15 1.67 7.15 -52.48 -0.38 1.30 16 30 H 0.41 2.04 9.11 45.56 0.42 2.46 16 31 H 0.16 2.85 7.17 -52.48 -0.38 2.47 16 32 H 0.41 9.56 8.02 -34.48 -0.28 9.28 16 33 H 0.28 6.59 8.31 -40.82 -0.34 6.25 16 34 H 0.16 2.74 7.18 -52.49 -0.38 2.36 16 LS Contribution 331.30 15.07 4.99 4.99 Total: -1.00 -32.29 331.30 -6.19 -38.49 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -1.80 Total: 11.31 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -1.14 Total: -6.06 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: 0.91 Total: -42.07 kcal Atomic # 8 Polarization: -71.50 SS G_CDS: -3.51 Total: -75.01 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.02 Total: 13.77 kcal Atomic # 16 Polarization: 55.19 SS G_CDS: -0.61 Total: 54.58 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.29 -6.19 -38.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831242431.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.574 kcal (2) G-P(sol) polarization free energy of solvation -32.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds