Wall clock time and date at job start Tue Mar 31 2020 05:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34703 * 116.99582 * 2 1 4 4 O 1.21467 * 120.00384 * 359.97438 * 3 2 1 5 5 C 1.47743 * 119.99732 * 179.97438 * 3 2 1 6 6 C 1.39369 * 120.08019 * 359.97438 * 5 3 2 7 7 C 1.39331 * 119.69931 * 180.02562 * 6 5 3 8 8 C 1.47747 * 120.07241 * 180.02562 * 7 6 5 9 9 O 1.21471 * 119.99541 * 180.02562 * 8 7 6 10 10 O 1.34702 * 120.00454 * 359.97438 * 8 7 6 11 11 C 1.39764 * 119.84822 * 359.73284 * 7 6 5 12 12 C 1.38054 * 120.14822 * 0.53757 * 11 7 6 13 13 S 1.76196 * 119.84471 * 179.73001 * 12 11 7 14 14 O 1.42099 * 106.40063 * 156.19211 * 13 12 11 15 15 O 1.42097 * 106.40586 * 23.26789 * 13 12 11 16 16 N 1.65608 * 107.21621 * 269.73076 * 13 12 11 17 17 C 1.36930 * 119.99959 * 65.00376 * 16 13 12 18 18 H 1.08001 * 120.00576 * 359.97438 * 17 16 13 19 19 C 1.38815 * 120.00134 * 180.02562 * 17 16 13 20 20 N 1.31613 * 119.99706 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00334 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47184 * 59.99502 * 21 19 17 23 23 H 1.48503 * 109.47082 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46789 * 299.99425 * 21 19 17 25 25 C 1.38095 * 120.30648 * 359.45878 * 12 11 7 26 26 H 1.08996 * 109.47429 * 300.00189 * 1 2 3 27 27 H 1.09005 * 109.47057 * 60.00936 * 1 2 3 28 28 H 1.09007 * 109.46904 * 180.02562 * 1 2 3 29 29 H 1.08008 * 120.14907 * 0.02562 * 6 5 3 30 30 H 0.96703 * 116.99997 * 180.02562 * 10 8 7 31 31 H 1.08006 * 119.92552 * 180.27066 * 11 7 6 32 32 H 0.97002 * 119.99894 * 244.99773 * 16 13 12 33 33 H 0.97000 * 120.00455 * 180.02562 * 20 19 17 34 34 H 1.07996 * 119.92159 * 180.24428 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4019 2.2190 -0.0005 5 6 3.5389 1.2776 0.0006 6 6 4.2996 0.1099 0.0017 7 6 5.6905 0.1921 0.0027 8 6 6.5050 -1.0406 0.0033 9 8 7.7175 -0.9673 0.0047 10 8 5.9031 -2.2457 0.0033 11 6 6.3134 1.4432 -0.0029 12 6 5.5538 2.5960 0.0016 13 16 6.3474 4.1691 0.0016 14 8 5.4128 5.0900 -0.5439 15 8 7.6444 3.9643 -0.5416 16 7 6.5669 4.6073 1.5835 17 6 7.4015 3.8771 2.3867 18 1 7.9164 3.0151 1.9889 19 6 7.5851 4.2441 3.7128 20 7 6.9574 5.2943 4.1979 21 14 8.7232 3.2476 4.8089 22 1 10.0947 3.2602 4.2399 23 1 8.7465 3.8426 6.1693 24 1 8.2332 1.8480 4.8886 25 6 4.1748 2.5218 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 3.8132 -0.8545 0.0017 30 1 6.4778 -3.0235 0.0041 31 1 7.3915 1.5084 -0.0065 32 1 6.1043 5.3814 1.9410 33 1 7.0859 5.5511 5.1244 34 1 3.5866 3.4276 0.0001 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000831242431.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:25 Heat of formation + Delta-G solvation = -243.086314 kcal Electronic energy + Delta-G solvation = -25743.452986 eV Core-core repulsion = 21539.877685 eV Total energy + Delta-G solvation = -4203.575301 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.054 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.96428 -41.30614 -39.69914 -38.13059 -37.60907 -37.16577 -36.75951 -36.52815 -33.13758 -32.98445 -32.86742 -28.76597 -26.49155 -26.15963 -25.29030 -23.86846 -21.71196 -20.56437 -20.09246 -19.52611 -19.17810 -18.43070 -18.31175 -17.51167 -17.44458 -17.32334 -17.02691 -16.81706 -16.76421 -16.31524 -15.92311 -15.28013 -14.84353 -14.67192 -14.55192 -13.98090 -13.82683 -13.62528 -13.38249 -13.13810 -13.04132 -13.03610 -12.94080 -12.87067 -12.65164 -12.44063 -12.33927 -12.07712 -11.87923 -11.87395 -11.76330 -11.67479 -10.82107 -10.58727 -10.21367 -8.36456 -5.91274 -0.84684 -0.73366 -0.36349 0.77645 1.44772 1.48665 1.50604 1.52270 1.58446 1.81797 2.18101 2.32713 2.60198 2.87080 3.17403 3.25815 3.48803 3.52960 3.64367 3.78866 4.02406 4.17044 4.31247 4.34208 4.35599 4.59334 4.67757 4.74696 4.80874 5.06246 5.12385 5.19242 5.47649 5.57366 6.48520 6.70699 6.88180 6.89532 7.27420 8.80873 Molecular weight = 329.05amu Principal moments of inertia in cm(-1) A = 0.010045 B = 0.004927 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2786.800479 B = 5681.539327 C = 6559.536840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.347 6.347 3 C 0.520 3.480 4 O -0.527 6.527 5 C -0.165 4.165 6 C 0.059 3.941 7 C -0.164 4.164 8 C 0.544 3.456 9 O -0.537 6.537 10 O -0.492 6.492 11 C 0.067 3.933 12 C -0.689 4.689 13 S 2.656 3.344 14 O -1.004 7.004 15 O -0.984 6.984 16 N -0.963 5.963 17 C -0.311 4.311 18 H 0.110 0.890 19 C -0.010 4.010 20 N -0.917 5.917 21 Si 0.977 3.023 22 H -0.267 1.267 23 H -0.279 1.279 24 H -0.263 1.263 25 C 0.066 3.934 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.142 0.858 29 H 0.195 0.805 30 H 0.440 0.560 31 H 0.152 0.848 32 H 0.409 0.591 33 H 0.275 0.725 34 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.785 -17.185 -5.751 20.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.263 6.263 3 C 0.365 3.635 4 O -0.417 6.417 5 C -0.167 4.167 6 C 0.041 3.959 7 C -0.166 4.166 8 C 0.388 3.612 9 O -0.428 6.428 10 O -0.307 6.307 11 C 0.048 3.952 12 C -0.772 4.772 13 S 2.747 3.253 14 O -0.993 6.993 15 O -0.974 6.974 16 N -0.716 5.716 17 C -0.447 4.447 18 H 0.127 0.873 19 C -0.213 4.213 20 N -0.559 5.559 21 Si 0.801 3.199 22 H -0.192 1.192 23 H -0.204 1.204 24 H -0.188 1.188 25 C 0.046 3.954 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.160 0.840 29 H 0.212 0.788 30 H 0.303 0.697 31 H 0.170 0.830 32 H 0.244 0.756 33 H 0.085 0.915 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -9.695 -16.189 -6.504 19.960 hybrid contribution 0.208 -0.484 1.104 1.223 sum -9.487 -16.673 -5.400 19.929 Atomic orbital electron populations 1.23697 0.73553 1.06362 1.02884 1.86509 1.25738 1.30426 1.83652 1.20825 0.88266 0.82110 0.72249 1.90869 1.66969 1.37076 1.46825 1.19154 0.90289 0.94471 1.12748 1.22210 0.91375 0.99657 0.82676 1.19162 0.93925 0.91062 1.12448 1.20295 0.85181 0.84155 0.71553 1.90943 1.16392 1.88173 1.47318 1.84461 1.45259 1.16051 1.84895 1.21359 1.01351 0.90049 0.82458 1.31547 1.04511 1.23546 1.17588 1.03971 0.73396 0.74001 0.73949 1.93450 1.64242 1.62815 1.78831 1.93488 1.39020 1.86645 1.78286 1.51446 1.53638 1.35805 1.30692 1.19494 1.19679 1.12049 0.93440 0.87278 1.25972 0.99587 0.97659 0.98112 1.69771 1.43516 1.26079 1.16551 0.85214 0.78824 0.78547 0.77325 1.19213 1.20438 1.18789 1.21291 0.92367 0.98790 0.82937 0.91838 0.91563 0.84034 0.78821 0.69726 0.83016 0.75581 0.91550 0.83004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 113.37 1.20 1.56 16 2 O -0.35 -6.79 9.81 -56.13 -0.55 -7.34 16 3 C 0.52 13.81 7.90 70.34 0.56 14.37 16 4 O -0.53 -17.09 16.13 19.94 0.32 -16.77 16 5 C -0.16 -4.56 5.87 -20.13 -0.12 -4.67 16 6 C 0.06 1.34 9.18 22.81 0.21 1.55 16 7 C -0.16 -4.44 5.87 -20.13 -0.12 -4.56 16 8 C 0.54 13.14 8.27 70.34 0.58 13.72 16 9 O -0.54 -16.77 17.12 19.93 0.34 -16.43 16 10 O -0.49 -6.93 12.67 -56.12 -0.71 -7.64 16 11 C 0.07 2.27 9.06 22.60 0.20 2.48 16 12 C -0.69 -25.14 5.88 22.19 0.13 -25.01 16 13 S 2.66 114.53 5.70 -56.49 -0.32 114.21 16 14 O -1.00 -45.69 17.26 -128.00 -2.21 -47.89 16 15 O -0.98 -46.39 16.96 -128.00 -2.17 -48.56 16 16 N -0.96 -46.05 5.75 -54.27 -0.31 -46.36 16 17 C -0.31 -15.54 9.63 84.04 0.81 -14.73 16 18 H 0.11 5.16 7.82 -2.91 -0.02 5.14 16 19 C -0.01 -0.50 5.50 84.86 0.47 -0.04 16 20 N -0.92 -48.96 13.06 21.65 0.28 -48.68 16 21 Si 0.98 40.09 29.55 68.60 2.03 42.11 16 22 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 23 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 24 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 25 C 0.07 2.20 9.06 22.60 0.20 2.40 16 26 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 28 H 0.14 0.77 8.14 -2.38 -0.02 0.76 16 29 H 0.19 2.95 7.15 -2.91 -0.02 2.93 16 30 H 0.44 2.03 9.11 -74.06 -0.67 1.36 16 31 H 0.15 5.38 7.17 -2.91 -0.02 5.36 16 32 H 0.41 20.11 8.02 -96.74 -0.78 19.34 16 33 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 34 H 0.15 5.24 7.18 -2.91 -0.02 5.22 16 Total: -1.00 -72.09 331.30 0.58 -71.51 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: -0.24 Total: 24.77 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: 4.12 Total: -12.94 kcal Atomic # 7 Polarization: -95.01 SS G_CDS: -0.03 Total: -95.04 kcal Atomic # 8 Polarization: -139.65 SS G_CDS: -4.98 Total: -144.63 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 2.03 Total: 42.11 kcal Atomic # 16 Polarization: 114.53 SS G_CDS: -0.32 Total: 114.21 kcal Total: -72.09 0.58 -71.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831242431.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -171.578 kcal (2) G-P(sol) polarization free energy of solvation -72.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -243.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -243.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds