Wall clock time and date at job start Tue Mar 31 2020 05:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86809 * 119.99649 * 2 1 4 4 H 1.48502 * 109.46629 * 269.99446 * 3 2 1 5 5 H 1.48496 * 109.47255 * 29.99417 * 3 2 1 6 6 H 1.48497 * 109.47116 * 149.99615 * 3 2 1 7 7 C 1.38945 * 120.00489 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99924 * 0.02562 * 7 2 1 9 9 N 1.37098 * 120.00206 * 180.02562 * 7 2 1 10 10 C 1.34775 * 119.99796 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00207 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99767 * 179.97438 * 10 9 7 13 13 O 1.45198 * 109.47252 * 180.02562 * 12 10 9 14 14 C 1.34746 * 117.00464 * 180.02562 * 13 12 10 15 15 O 1.21507 * 119.99513 * 0.27079 * 14 13 12 16 16 C 1.47476 * 120.00289 * 180.02562 * 14 13 12 17 17 C 1.39757 * 120.08761 * 359.97438 * 16 14 13 18 18 C 1.37742 * 120.00086 * 179.97438 * 17 16 14 19 19 C 1.38874 * 120.22270 * 359.97438 * 18 17 16 20 20 C 1.39569 * 120.06676 * 0.02562 * 19 18 17 21 21 C 1.38105 * 119.98023 * 359.73644 * 20 19 18 22 22 O 1.36543 * 108.58870 * 179.97438 * 20 19 18 23 23 C 1.43981 * 105.44943 * 342.68919 * 22 20 19 24 24 F 1.39897 * 110.56558 * 268.62343 * 23 22 20 25 25 F 1.39900 * 110.68941 * 145.83079 * 23 22 20 26 26 O 1.36355 * 131.34621 * 180.02562 * 19 18 17 27 27 H 0.97004 * 120.00626 * 0.02562 * 1 2 3 28 28 H 0.96992 * 120.00026 * 359.97438 * 9 7 2 29 29 H 1.09003 * 109.46831 * 60.00751 * 12 10 9 30 30 H 1.08998 * 109.47254 * 300.00384 * 12 10 9 31 31 H 1.08002 * 119.99802 * 359.97438 * 17 16 14 32 32 H 1.07997 * 119.88916 * 180.02562 * 18 17 16 33 33 H 1.07997 * 120.04557 * 180.25336 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4454 2.6528 0.6999 6 1 3.5455 1.4404 0.7001 7 6 2.0089 -1.2032 0.0005 8 1 1.4690 -2.1386 0.0005 9 7 3.3799 -1.2032 0.0011 10 6 4.0538 -2.3704 0.0011 11 8 3.4474 -3.4208 0.0001 12 6 5.5608 -2.3703 0.0011 13 8 6.0449 -3.7392 0.0005 14 6 7.3807 -3.9157 0.0009 15 8 8.1208 -2.9521 0.0068 16 6 7.9445 -5.2785 -0.0002 17 6 7.0949 -6.3882 -0.0013 18 6 7.6233 -7.6602 -0.0029 19 6 8.9997 -7.8453 -0.0040 20 6 9.8537 -6.7415 -0.0030 21 6 9.3299 -5.4636 -0.0064 22 8 11.1437 -7.1892 -0.0039 23 6 11.0717 -8.5671 0.4075 24 9 11.2066 -8.6731 1.7959 25 9 12.0514 -9.3279 -0.2395 26 8 9.7559 -8.9799 -0.0061 27 1 -0.4851 0.8400 -0.0004 28 1 3.8648 -0.3632 0.0007 29 1 5.9241 -1.8565 0.8912 30 1 5.9241 -1.8564 -0.8889 31 1 6.0240 -6.2483 -0.0008 32 1 6.9652 -8.5164 -0.0041 33 1 9.9898 -4.6087 -0.0097 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837885346.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:35 Heat of formation + Delta-G solvation = -242.781456 kcal Electronic energy + Delta-G solvation = -26480.163831 eV Core-core repulsion = 21722.761363 eV Total energy + Delta-G solvation = -4757.402468 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.063 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.99300 -48.44995 -42.83767 -40.63580 -38.62095 -37.96698 -37.59320 -36.33290 -34.12294 -31.86390 -31.54380 -30.95571 -28.65159 -25.95591 -25.09041 -24.27479 -23.71937 -21.81020 -19.81207 -19.72768 -19.61800 -19.30017 -18.68293 -18.46352 -17.16729 -16.78365 -16.58590 -16.27636 -15.80494 -15.54526 -15.36279 -15.15766 -14.97909 -14.69701 -14.69271 -14.47296 -14.42912 -14.30559 -13.84389 -13.75428 -13.40660 -13.00587 -12.75153 -12.42425 -12.26805 -12.21284 -11.82568 -11.30735 -10.82720 -10.69536 -10.66407 -10.09589 -9.72682 -9.64945 -9.16997 -8.74264 -8.34469 -6.43667 -3.96978 -0.08692 0.48750 1.07264 1.52332 2.09051 2.38616 2.95196 3.00048 3.06405 3.09340 3.32308 3.42057 3.48983 3.52636 3.99595 4.11976 4.17867 4.28874 4.51686 4.64041 4.70107 5.06135 5.13655 5.25487 5.27721 5.41492 5.46288 5.59125 5.60071 5.66941 6.11623 6.27028 7.38285 7.56034 7.95383 8.42089 8.78664 9.24723 9.59086 10.68366 Molecular weight = 329.06amu Principal moments of inertia in cm(-1) A = 0.039976 B = 0.002087 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.251318 B =13410.194158 C =13911.279345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.046 3.954 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.268 1.268 7 C -0.309 4.309 8 H 0.123 0.877 9 N -0.578 5.578 10 C 0.447 3.553 11 O -0.558 6.558 12 C 0.059 3.941 13 O -0.316 6.316 14 C 0.511 3.489 15 O -0.503 6.503 16 C -0.103 4.103 17 C -0.032 4.032 18 C -0.093 4.093 19 C 0.060 3.940 20 C 0.010 3.990 21 C -0.019 4.019 22 O -0.282 6.282 23 C 0.571 3.429 24 F -0.152 7.152 25 F -0.115 7.115 26 O -0.283 6.283 27 H 0.276 0.724 28 H 0.373 0.627 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.172 0.828 32 H 0.157 0.843 33 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.482 -13.237 0.415 25.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.193 1.193 7 C -0.437 4.437 8 H 0.140 0.860 9 N -0.217 5.217 10 C 0.232 3.768 11 O -0.440 6.440 12 C -0.018 4.018 13 O -0.231 6.231 14 C 0.355 3.645 15 O -0.393 6.393 16 C -0.104 4.104 17 C -0.050 4.050 18 C -0.112 4.112 19 C 0.016 3.984 20 C -0.034 4.034 21 C -0.037 4.037 22 O -0.202 6.202 23 C 0.462 3.538 24 F -0.133 7.133 25 F -0.096 7.096 26 O -0.202 6.202 27 H 0.087 0.913 28 H 0.207 0.793 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.189 0.811 32 H 0.174 0.826 33 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 21.237 -13.678 0.338 25.263 hybrid contribution 1.122 1.247 0.104 1.680 sum 22.359 -12.431 0.442 25.586 Atomic orbital electron populations 1.69608 1.05670 1.27839 1.48106 1.25046 0.95526 0.98108 0.97192 0.86680 0.79865 0.83846 0.79120 1.19380 1.19932 1.19322 1.19417 0.78608 0.96887 1.48805 0.85955 1.42029 1.07670 1.05714 1.66329 1.19130 0.86788 0.85191 0.85734 1.90602 1.68987 1.30666 1.53725 1.22832 0.95287 0.79761 1.03947 1.86571 1.21759 1.31762 1.82975 1.20695 0.81476 0.88946 0.73378 1.90865 1.60659 1.42001 1.45726 1.18762 0.92028 0.91511 1.08108 1.21623 1.02151 0.89413 0.91785 1.20196 0.89304 0.99131 1.02524 1.19974 0.93758 0.82380 1.02312 1.19168 0.80922 0.94774 1.08525 1.19994 0.93886 0.93967 0.95884 1.87670 1.25078 1.24134 1.83271 1.21872 0.78428 0.78075 0.75388 1.93290 1.95348 1.95348 1.29350 1.93265 1.60639 1.74394 1.81303 1.87625 1.20017 1.30084 1.82511 0.91328 0.79344 0.89075 0.89074 0.81093 0.82555 0.82244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.47 13.96 55.50 0.77 -23.70 16 2 C 0.05 1.19 5.50 -17.47 -0.10 1.10 16 3 Si 0.88 18.43 27.74 -169.99 -4.71 13.71 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 6 H -0.27 -5.08 6.52 56.52 0.37 -4.72 16 7 C -0.31 -8.33 10.16 -14.93 -0.15 -8.48 16 8 H 0.12 3.77 7.39 -52.48 -0.39 3.38 16 9 N -0.58 -13.02 5.09 -10.96 -0.06 -13.08 16 10 C 0.45 9.64 7.86 -10.98 -0.09 9.55 16 11 O -0.56 -14.30 16.08 -14.11 -0.23 -14.53 16 12 C 0.06 0.96 5.95 36.01 0.21 1.17 16 13 O -0.32 -4.94 8.99 -47.30 -0.43 -5.37 16 14 C 0.51 6.88 7.89 34.49 0.27 7.15 16 15 O -0.50 -7.53 16.13 -19.27 -0.31 -7.84 16 16 C -0.10 -1.09 5.87 -104.99 -0.62 -1.71 16 17 C -0.03 -0.28 9.60 -39.20 -0.38 -0.66 16 18 C -0.09 -0.73 10.04 -39.53 -0.40 -1.12 16 19 C 0.06 0.56 7.16 -38.85 -0.28 0.28 16 20 C 0.01 0.10 7.14 -39.13 -0.28 -0.18 16 21 C -0.02 -0.18 9.60 -39.06 -0.38 -0.56 16 22 O -0.28 -2.88 11.35 -45.83 -0.52 -3.40 16 23 C 0.57 5.40 3.69 101.05 0.37 5.77 16 24 F -0.15 -1.43 17.57 2.25 0.04 -1.39 16 25 F -0.12 -1.03 17.57 2.25 0.04 -0.99 16 26 O -0.28 -2.74 11.33 -45.21 -0.51 -3.26 16 27 H 0.28 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.37 7.29 5.76 -40.82 -0.24 7.06 16 29 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.17 1.51 7.60 -52.49 -0.40 1.11 16 32 H 0.16 0.83 8.06 -52.49 -0.42 0.41 16 33 H 0.16 1.44 7.64 -52.49 -0.40 1.04 16 LS Contribution 318.04 15.07 4.79 4.79 Total: -1.00 -31.68 318.04 -4.78 -36.45 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -1.86 Total: 6.27 kcal Atomic # 6 Polarization: 14.12 SS G_CDS: -1.80 Total: 12.32 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 0.72 Total: -36.78 kcal Atomic # 8 Polarization: -32.40 SS G_CDS: -2.00 Total: -34.39 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.08 Total: -2.38 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -4.71 Total: 13.71 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.68 -4.78 -36.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837885346.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -206.328 kcal (2) G-P(sol) polarization free energy of solvation -31.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -242.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds