Wall clock time and date at job start Tue Mar 31 2020 05:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00142 * 2 1 4 4 H 1.48501 * 109.47450 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46926 * 299.99791 * 3 2 1 6 6 H 1.48499 * 109.47236 * 59.99790 * 3 2 1 7 7 C 1.37881 * 120.00077 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00184 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99858 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47064 * 180.02562 * 9 7 2 11 11 S 1.81401 * 109.47287 * 179.97438 * 10 9 7 12 12 O 1.42102 * 110.53959 * 68.37395 * 11 10 9 13 13 O 1.42096 * 110.54361 * 291.62870 * 11 10 9 14 14 N 1.65592 * 104.45032 * 179.97438 * 11 10 9 15 15 C 1.46506 * 119.99920 * 65.00526 * 14 11 10 16 16 H 1.08990 * 109.47051 * 24.99749 * 15 14 11 17 17 C 1.50697 * 109.46636 * 264.99419 * 15 14 11 18 18 O 1.20822 * 120.00757 * 0.02562 * 17 15 14 19 19 O 1.34233 * 119.99529 * 179.97438 * 17 15 14 20 20 C 1.50706 * 109.47235 * 144.99930 * 15 14 11 21 21 C 1.38264 * 119.94244 * 219.99986 * 20 15 14 22 22 C 1.38145 * 120.05437 * 179.97438 * 21 20 15 23 23 C 1.38734 * 119.94237 * 0.25588 * 22 21 20 24 24 O 1.35904 * 120.05067 * 179.74240 * 23 22 21 25 25 C 1.38735 * 119.88958 * 359.47324 * 23 22 21 26 26 C 1.38137 * 119.94094 * 0.54351 * 25 23 22 27 27 H 0.97001 * 119.99373 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.46471 * 60.00178 * 9 7 2 29 29 H 1.08995 * 109.47067 * 300.00374 * 9 7 2 30 30 H 1.09007 * 109.47083 * 60.00127 * 10 9 7 31 31 H 1.09001 * 109.47516 * 300.00489 * 10 9 7 32 32 H 0.97003 * 120.00095 * 245.00103 * 14 11 10 33 33 H 0.96705 * 117.00139 * 180.02562 * 19 17 15 34 34 H 1.07999 * 119.97244 * 359.95432 * 21 20 15 35 35 H 1.08002 * 120.02435 * 179.97438 * 22 21 20 36 36 H 0.96695 * 113.99480 * 90.00320 * 24 23 22 37 37 H 1.07992 * 120.02678 * 180.25528 * 25 23 22 38 38 H 1.08007 * 119.97477 * 179.72701 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 16 1.3383 -5.2331 0.0002 12 8 0.6639 -5.4200 -1.2365 13 8 0.6646 -5.4193 1.2374 14 7 2.5204 -6.3927 -0.0006 15 6 3.4196 -6.5228 1.1488 16 1 2.9294 -6.1308 2.0398 17 6 4.6840 -5.7456 0.8877 18 8 4.8200 -5.1442 -0.1513 19 8 5.6588 -5.7205 1.8102 20 6 3.7579 -7.9762 1.3599 21 6 3.8296 -8.4889 2.6419 22 6 4.1391 -9.8208 2.8381 23 6 4.3831 -10.6429 1.7476 24 8 4.6928 -11.9524 1.9382 25 6 4.3049 -10.1274 0.4619 26 6 3.9955 -8.7947 0.2712 27 1 -0.4849 0.8401 -0.0004 28 1 0.6241 -2.5566 -0.8903 29 1 0.6247 -2.5571 0.8896 30 1 2.8719 -3.6043 0.8895 31 1 2.8720 -3.6043 -0.8905 32 1 2.6175 -6.9858 -0.7619 33 1 6.4510 -5.2082 1.5980 34 1 3.6440 -7.8474 3.4907 35 1 4.1954 -10.2207 3.8398 36 1 3.9246 -12.5393 1.9582 37 1 4.4904 -10.7663 -0.3887 38 1 3.9388 -8.3917 -0.7293 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844204066.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:45 Heat of formation + Delta-G solvation = -180.211863 kcal Electronic energy + Delta-G solvation = -25967.550426 eV Core-core repulsion = 21902.534660 eV Total energy + Delta-G solvation = -4065.015766 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.86856 -39.83041 -37.56784 -36.70150 -36.37792 -35.58167 -34.96616 -33.89249 -31.45262 -31.16439 -30.46462 -27.07209 -25.60424 -23.29092 -22.89424 -21.65832 -21.36706 -19.20867 -18.78491 -18.32160 -17.87590 -17.21531 -16.96780 -16.40215 -16.01748 -15.79400 -15.56581 -15.37320 -15.01295 -14.73838 -14.52951 -13.81002 -13.79179 -13.48584 -13.39652 -12.72533 -12.53312 -12.35732 -12.19556 -11.81023 -11.71427 -11.69758 -11.63940 -11.54026 -11.16900 -11.08827 -10.93762 -10.84139 -10.42914 -10.38301 -10.04499 -9.62558 -9.36639 -9.11378 -8.93807 -8.50334 -6.12346 -4.17299 0.59870 0.77048 0.98110 1.97844 2.52324 2.99162 3.25604 3.32900 3.36149 3.37276 3.81921 4.10054 4.14371 4.37434 4.41779 4.52110 4.60022 4.76064 4.93045 5.00672 5.08705 5.23047 5.33371 5.41813 5.60720 5.62678 5.80844 5.86532 6.03079 6.11927 6.29000 6.37668 6.52019 6.77044 7.25010 7.29711 7.35117 7.69081 7.81770 8.18135 8.86435 9.47363 10.98793 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.022557 B = 0.003130 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.984646 B = 8944.396818 C = 9566.830441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.057 3.943 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.517 4.517 8 H 0.062 0.938 9 C 0.028 3.972 10 C -0.580 4.580 11 S 2.585 3.415 12 O -0.957 6.957 13 O -0.961 6.961 14 N -1.102 6.102 15 C 0.207 3.793 16 H 0.142 0.858 17 C 0.459 3.541 18 O -0.488 6.488 19 O -0.510 6.510 20 C -0.097 4.097 21 C -0.073 4.073 22 C -0.142 4.142 23 C 0.112 3.888 24 O -0.500 6.500 25 C -0.143 4.143 26 C -0.087 4.087 27 H 0.264 0.736 28 H 0.035 0.965 29 H 0.033 0.967 30 H 0.111 0.889 31 H 0.130 0.870 32 H 0.418 0.582 33 H 0.413 0.587 34 H 0.138 0.862 35 H 0.134 0.866 36 H 0.392 0.608 37 H 0.132 0.868 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.551 -21.291 5.055 24.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.557 4.557 8 H 0.080 0.920 9 C -0.011 4.011 10 C -0.714 4.714 11 S 2.683 3.317 12 O -0.947 6.947 13 O -0.951 6.951 14 N -0.857 5.857 15 C 0.096 3.904 16 H 0.159 0.841 17 C 0.297 3.703 18 O -0.374 6.374 19 O -0.321 6.321 20 C -0.099 4.099 21 C -0.091 4.091 22 C -0.161 4.161 23 C 0.067 3.933 24 O -0.311 6.311 25 C -0.161 4.161 26 C -0.106 4.106 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.130 0.870 31 H 0.149 0.851 32 H 0.254 0.746 33 H 0.272 0.728 34 H 0.156 0.844 35 H 0.152 0.848 36 H 0.248 0.752 37 H 0.150 0.850 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 9.682 -21.126 5.013 23.773 hybrid contribution 1.235 1.167 -0.573 1.793 sum 10.917 -19.959 4.440 23.179 Atomic orbital electron populations 1.69966 1.06090 1.27069 1.49789 1.25067 0.94976 0.99528 0.94938 0.86414 0.79964 0.83163 0.77752 1.19655 1.20784 1.20801 1.21035 0.93133 0.89653 1.51849 0.91975 1.18993 0.92635 0.90589 0.98905 1.30428 1.13325 1.17092 1.10525 1.05956 0.74591 0.76685 0.74429 1.93571 1.71131 1.85149 1.44861 1.93554 1.71044 1.85013 1.45531 1.55940 1.50105 1.53009 1.26627 1.18946 0.86727 0.92923 0.91765 0.84056 1.23979 0.85452 0.79258 0.81632 1.90785 1.79193 1.40994 1.26399 1.84496 1.29658 1.69897 1.48070 1.19416 1.03176 0.92933 0.94366 1.20951 0.96926 0.94963 0.96284 1.21420 1.01333 0.94104 0.99237 1.18555 0.97893 0.84673 0.92168 1.84820 1.36289 1.15067 1.94901 1.21377 1.01877 0.95983 0.96912 1.20868 0.97720 0.93181 0.98815 0.92595 0.94721 0.94828 0.87023 0.85130 0.74639 0.72769 0.84408 0.84809 0.75161 0.84982 0.85207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.53 13.29 55.43 0.74 -25.80 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.46 9.11 -34.44 -0.31 -14.77 16 8 H 0.06 1.67 7.74 -52.48 -0.41 1.27 16 9 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 10 C -0.58 -11.50 4.72 37.15 0.18 -11.33 16 11 S 2.58 46.00 5.44 -107.50 -0.58 45.41 16 12 O -0.96 -19.71 18.08 -57.54 -1.04 -20.75 16 13 O -0.96 -18.98 17.39 -57.54 -1.00 -19.98 16 14 N -1.10 -14.39 4.80 -6.88 -0.03 -14.43 16 15 C 0.21 2.38 2.91 -70.23 -0.20 2.17 16 16 H 0.14 1.50 7.34 -51.93 -0.38 1.12 16 17 C 0.46 5.47 7.07 36.00 0.25 5.73 16 18 O -0.49 -7.18 15.71 -18.75 -0.29 -7.48 16 19 O -0.51 -4.68 13.34 -39.27 -0.52 -5.20 16 20 C -0.10 -0.96 4.88 -104.60 -0.51 -1.47 16 21 C -0.07 -0.63 9.66 -39.61 -0.38 -1.01 16 22 C -0.14 -1.15 9.99 -39.43 -0.39 -1.54 16 23 C 0.11 0.94 6.71 -39.21 -0.26 0.68 16 24 O -0.50 -3.63 13.50 -19.44 -0.26 -3.89 16 25 C -0.14 -1.20 9.99 -39.43 -0.39 -1.60 16 26 C -0.09 -0.80 9.14 -39.61 -0.36 -1.17 16 27 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 28 H 0.03 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.11 2.01 7.71 -51.92 -0.40 1.61 16 31 H 0.13 2.52 7.80 -51.92 -0.41 2.11 16 32 H 0.42 4.60 7.04 -34.47 -0.24 4.36 16 33 H 0.41 2.26 9.10 45.56 0.41 2.67 16 34 H 0.14 0.96 8.03 -52.49 -0.42 0.54 16 35 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 36 H 0.39 0.99 9.06 45.56 0.41 1.40 16 37 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 38 H 0.13 1.06 6.81 -52.48 -0.36 0.70 16 LS Contribution 348.38 15.07 5.25 5.25 Total: -1.00 -38.36 348.38 -8.02 -46.38 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -2.61 Total: 6.33 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: -2.63 Total: -22.21 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: 0.70 Total: -40.22 kcal Atomic # 8 Polarization: -54.18 SS G_CDS: -3.12 Total: -57.31 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 46.00 SS G_CDS: -0.58 Total: 45.41 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -38.36 -8.02 -46.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844204066.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.832 kcal (2) G-P(sol) polarization free energy of solvation -38.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds