Wall clock time and date at job start Tue Mar 31 2020 05:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.50698 * 109.47177 * 119.99481 * 2 1 3 13 13 O 1.21280 * 119.99901 * 120.00184 * 12 2 1 14 14 N 1.34774 * 120.00338 * 300.00305 * 12 2 1 15 15 S 1.65602 * 120.00482 * 179.97438 * 14 12 2 16 16 O 1.42096 * 106.40622 * 178.54081 * 15 14 12 17 17 O 1.42101 * 106.39854 * 311.46228 * 15 14 12 18 18 C 1.76204 * 107.21691 * 64.99930 * 15 14 12 19 19 C 1.38671 * 120.41692 * 90.00140 * 18 15 14 20 20 C 1.38626 * 118.42121 * 180.02562 * 19 18 15 21 21 C 1.38230 * 119.16087 * 359.97438 * 20 19 18 22 22 N 1.48016 * 119.61960 * 179.97438 * 21 20 19 23 23 O 1.21800 * 119.99589 * 0.02562 * 22 21 20 24 24 O 1.21801 * 120.00263 * 180.02562 * 22 21 20 25 25 N 1.31861 * 120.76165 * 0.02562 * 21 20 19 26 26 C 1.31879 * 121.72617 * 359.70145 * 25 21 20 27 27 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 29 29 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 30 30 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 31 31 H 0.97006 * 120.00251 * 0.02562 * 14 12 2 32 32 H 1.08001 * 120.78673 * 0.02562 * 19 18 15 33 33 H 1.07999 * 120.42165 * 179.97438 * 20 19 18 34 34 H 1.07997 * 119.62138 * 180.31325 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 6 2.0323 -0.7103 1.2305 13 8 2.7296 -1.6963 1.1193 14 7 1.7067 -0.2498 2.4546 15 16 2.2582 -1.0307 3.8068 16 8 1.7780 -0.2912 4.9212 17 8 1.9829 -2.4113 3.6132 18 6 4.0129 -0.8707 3.8223 19 6 4.6141 0.2074 4.4542 20 6 5.9976 0.2925 4.4407 21 6 6.7269 -0.6934 3.8027 22 7 8.2047 -0.6123 3.7815 23 8 8.7712 0.3191 4.3247 24 8 8.8541 -1.4769 3.2210 25 7 6.1212 -1.7047 3.2119 26 6 4.8075 -1.8207 3.2095 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.7088 1.1611 -3.4845 31 1 1.1487 0.5387 2.5436 32 1 4.0185 0.9627 4.9453 33 1 6.4995 1.1186 4.9224 34 1 4.3472 -2.6659 2.7194 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850879626.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:01 Heat of formation + Delta-G solvation = -64.327472 kcal Electronic energy + Delta-G solvation = -25834.374951 eV Core-core repulsion = 21670.843967 eV Total energy + Delta-G solvation = -4163.530985 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.061 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.61276 -40.79182 -39.67473 -37.56994 -36.92419 -36.24656 -34.34520 -33.97236 -33.70091 -32.75645 -30.64226 -27.73943 -25.39940 -24.75771 -23.77270 -23.67524 -20.66652 -20.17466 -20.00332 -19.16143 -18.68112 -18.00719 -17.86677 -17.30842 -16.66151 -16.25606 -15.64625 -15.36068 -14.94296 -14.84538 -14.75519 -14.42403 -13.99037 -13.71908 -13.01974 -12.66891 -12.45933 -12.32217 -11.98014 -11.94485 -11.88295 -11.70137 -11.42872 -11.28678 -11.20928 -11.00146 -10.90840 -10.75281 -10.55195 -10.47759 -10.45127 -10.20803 -9.33494 -9.27696 -8.59324 -6.25528 -4.31487 -1.02431 -0.15642 0.27052 0.64055 0.69424 2.34122 2.59882 2.81653 3.24822 3.28311 3.29740 3.33834 3.46456 3.63260 3.80021 4.04740 4.27292 4.37282 4.60786 4.80732 4.96071 5.04230 5.08484 5.45419 5.50036 5.90676 6.31075 6.50331 6.55199 6.56805 6.80019 7.16817 7.34575 7.53716 7.71064 7.92189 8.18006 8.76766 9.35867 10.81556 Molecular weight = 329.06amu Principal moments of inertia in cm(-1) A = 0.011772 B = 0.004303 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.888714 B = 6505.397925 C = 8136.498148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.034 3.966 3 H 0.065 0.935 4 C -0.515 4.515 5 H 0.077 0.923 6 C 0.064 3.936 7 N -0.892 5.892 8 Si 0.904 3.096 9 H -0.286 1.286 10 H -0.275 1.275 11 H -0.274 1.274 12 C 0.538 3.462 13 O -0.494 6.494 14 N -1.052 6.052 15 S 2.682 3.318 16 O -0.943 6.943 17 O -0.916 6.916 18 C -0.698 4.698 19 C 0.036 3.964 20 C -0.127 4.127 21 C 0.223 3.777 22 N 0.018 4.982 23 O -0.145 6.145 24 O -0.104 6.104 25 N -0.443 5.443 26 C 0.243 3.757 27 H 0.038 0.962 28 H 0.017 0.983 29 H 0.100 0.900 30 H 0.265 0.735 31 H 0.436 0.564 32 H 0.180 0.820 33 H 0.176 0.824 34 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.287 2.868 14.549 15.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.011 3.989 3 H 0.083 0.917 4 C -0.553 4.553 5 H 0.095 0.905 6 C -0.138 4.138 7 N -0.531 5.531 8 Si 0.731 3.269 9 H -0.212 1.212 10 H -0.201 1.201 11 H -0.199 1.199 12 C 0.328 3.672 13 O -0.365 6.365 14 N -0.822 5.822 15 S 2.768 3.232 16 O -0.933 6.933 17 O -0.906 6.906 18 C -0.783 4.783 19 C 0.009 3.991 20 C -0.149 4.149 21 C 0.006 3.994 22 N 0.544 4.456 23 O -0.357 6.357 24 O -0.330 6.330 25 N -0.156 5.156 26 C 0.084 3.916 27 H 0.057 0.943 28 H 0.036 0.964 29 H 0.119 0.881 30 H 0.075 0.925 31 H 0.273 0.727 32 H 0.197 0.803 33 H 0.194 0.806 34 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 3.081 1.204 14.546 14.917 hybrid contribution 0.613 0.899 -0.656 1.271 sum 3.694 2.103 13.890 14.526 Atomic orbital electron populations 1.21829 0.95588 1.00659 1.01671 1.19062 0.94882 0.97095 0.87873 0.91730 1.21053 1.32190 1.13389 0.88698 0.90451 1.24932 0.94728 0.94929 0.99250 1.69833 1.36301 1.22744 1.24174 0.86452 0.79341 0.79823 0.81290 1.21206 1.20084 1.19922 1.22411 0.77044 0.83448 0.84316 1.90678 1.35834 1.24535 1.85428 1.55235 1.60834 1.44059 1.22040 1.02841 0.72654 0.74572 0.73100 1.93637 1.77954 1.73069 1.48626 1.93674 1.81596 1.30616 1.84750 1.32559 1.30537 1.04614 1.10590 1.21557 0.93709 0.94213 0.89622 1.21874 0.94682 0.99334 0.99041 1.22016 0.83479 0.94857 0.99047 1.43460 1.02253 1.00400 0.99459 1.94562 1.70588 1.25583 1.44985 1.94624 1.64633 1.32710 1.41074 1.66698 1.12786 1.20978 1.15140 1.22941 0.85321 0.95924 0.87429 0.94262 0.96449 0.88124 0.92531 0.72663 0.80304 0.80611 0.77648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 8.87 37.16 0.33 -2.42 16 2 C 0.03 0.72 2.64 -92.93 -0.25 0.48 16 3 H 0.07 1.37 8.14 -51.92 -0.42 0.95 16 4 C -0.51 -13.00 8.37 -34.44 -0.29 -13.28 16 5 H 0.08 2.04 6.75 -52.49 -0.35 1.69 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -22.88 11.32 55.43 0.63 -22.25 16 8 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 9 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 12 C 0.54 9.81 6.98 -10.99 -0.08 9.74 16 13 O -0.49 -10.14 12.72 -11.50 -0.15 -10.28 16 14 N -1.05 -13.83 5.59 31.22 0.17 -13.66 16 15 S 2.68 33.92 5.41 -107.50 -0.58 33.34 16 16 O -0.94 -11.65 17.36 -57.17 -0.99 -12.64 16 17 O -0.92 -14.73 16.25 -64.60 -1.05 -15.78 16 18 C -0.70 -8.30 5.75 -39.44 -0.23 -8.53 16 19 C 0.04 0.33 9.65 -39.28 -0.38 -0.05 16 20 C -0.13 -1.22 9.60 -39.44 -0.38 -1.60 16 21 C 0.22 2.96 7.77 -146.19 -1.14 1.82 16 22 N 0.02 0.26 4.45 32.88 0.15 0.40 16 23 O -0.14 -1.89 18.43 -29.46 -0.54 -2.43 16 24 O -0.10 -1.61 19.03 -29.46 -0.56 -2.17 16 25 N -0.44 -6.62 10.05 -10.29 -0.10 -6.73 16 26 C 0.24 3.40 9.72 -17.55 -0.17 3.23 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.02 0.26 7.56 -51.93 -0.39 -0.13 16 29 H 0.10 2.24 6.07 -51.93 -0.32 1.92 16 30 H 0.26 6.56 8.31 -40.82 -0.34 6.22 16 31 H 0.44 4.23 8.25 -34.47 -0.28 3.95 16 32 H 0.18 0.95 7.71 -52.49 -0.40 0.55 16 33 H 0.18 1.12 7.61 -52.49 -0.40 0.72 16 34 H 0.21 2.90 6.89 -52.49 -0.36 2.54 16 LS Contribution 321.54 15.07 4.85 4.85 Total: -1.00 -31.59 321.54 -8.36 -39.95 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -2.49 Total: 1.11 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -2.67 Total: -9.09 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: 0.85 Total: -42.23 kcal Atomic # 8 Polarization: -40.02 SS G_CDS: -3.29 Total: -43.31 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 16 Polarization: 33.92 SS G_CDS: -0.58 Total: 33.34 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.59 -8.36 -39.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850879626.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.378 kcal (2) G-P(sol) polarization free energy of solvation -31.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds