Wall clock time and date at job start Tue Mar 31 2020 05:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46571 * 2 1 4 4 C 1.50693 * 109.47147 * 119.99600 * 2 1 3 5 5 H 1.08001 * 120.00322 * 114.35999 * 4 2 1 6 6 C 1.37875 * 120.00267 * 294.36331 * 4 2 1 7 7 N 1.31513 * 120.00363 * 156.52728 * 6 4 2 8 8 Si 1.86805 * 120.00006 * 336.79815 * 6 4 2 9 9 H 1.48501 * 109.47300 * 179.72713 * 8 6 4 10 10 H 1.48502 * 109.47135 * 299.72898 * 8 6 4 11 11 H 1.48503 * 109.46966 * 59.72485 * 8 6 4 12 12 C 1.50695 * 109.47297 * 240.00164 * 2 1 3 13 13 O 1.21288 * 119.99944 * 240.00005 * 12 2 1 14 14 N 1.34781 * 120.00328 * 59.99447 * 12 2 1 15 15 S 1.65595 * 120.00186 * 180.02562 * 14 12 2 16 16 O 1.42097 * 106.40581 * 178.54067 * 15 14 12 17 17 O 1.42100 * 106.40320 * 311.46466 * 15 14 12 18 18 C 1.76204 * 107.21643 * 65.00030 * 15 14 12 19 19 C 1.38669 * 120.41643 * 90.00288 * 18 15 14 20 20 C 1.38624 * 118.42426 * 180.02562 * 19 18 15 21 21 C 1.38226 * 119.15888 * 359.97438 * 20 19 18 22 22 N 1.48020 * 119.62292 * 179.97438 * 21 20 19 23 23 O 1.21811 * 119.99647 * 359.97438 * 22 21 20 24 24 O 1.21798 * 120.00709 * 180.02562 * 22 21 20 25 25 N 1.31854 * 120.76510 * 359.97438 * 21 20 19 26 26 C 1.31888 * 121.72504 * 359.70799 * 25 21 20 27 27 H 1.08994 * 109.47111 * 293.09227 * 1 2 3 28 28 H 1.08996 * 109.46973 * 53.09463 * 1 2 3 29 29 H 1.09000 * 109.46622 * 173.08998 * 1 2 3 30 30 H 0.97005 * 119.99791 * 355.20617 * 7 6 4 31 31 H 0.96995 * 119.99846 * 0.02562 * 14 12 2 32 32 H 1.08004 * 120.79149 * 0.02562 * 19 18 15 33 33 H 1.08004 * 120.42481 * 179.97438 * 20 19 18 34 34 H 1.08003 * 119.62111 * 180.30750 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.5761 -1.6385 1.1341 6 6 1.7978 -0.1753 2.4793 7 7 1.8010 -0.9537 3.5394 8 14 1.4679 1.6540 2.6650 9 1 1.2416 1.9733 4.0975 10 1 2.6372 2.4210 2.1655 11 1 0.2625 2.0217 1.8794 12 6 2.0324 -0.7103 -1.2304 13 8 2.7297 -1.6965 -1.1191 14 7 1.7068 -0.2500 -2.4546 15 16 2.2583 -1.0309 -3.8067 16 8 1.7214 -0.3317 -4.9211 17 8 3.6516 -1.2325 -3.6134 18 6 1.5215 -2.6314 -3.8215 19 6 0.3044 -2.8382 -4.4531 20 6 -0.2380 -4.1138 -4.4391 21 6 0.4478 -5.1303 -3.8010 22 7 -0.1222 -6.4962 -3.7792 23 8 -1.1900 -6.7192 -4.3213 24 8 0.4760 -7.3969 -3.2186 25 7 1.6039 -4.8973 -3.2113 26 6 2.1526 -3.6979 -3.2101 27 1 -0.3633 0.4030 0.9453 28 1 -0.3633 0.6171 -0.8217 29 1 -0.3632 -1.0202 -0.1236 30 1 1.8991 -1.9133 3.4362 31 1 1.1494 0.5388 -2.5436 32 1 -0.2088 -2.0247 -4.9443 33 1 -1.1844 -4.3111 -4.9206 34 1 3.1034 -3.5464 -2.7208 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850879627.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:03 Heat of formation + Delta-G solvation = -63.010481 kcal Electronic energy + Delta-G solvation = -25966.208653 eV Core-core repulsion = 21802.734777 eV Total energy + Delta-G solvation = -4163.473876 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.061 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.64000 -40.83444 -39.82368 -37.65817 -36.94757 -36.33024 -34.48203 -34.02302 -33.74913 -32.79963 -31.28248 -27.77873 -25.18167 -24.80561 -23.82652 -23.70238 -20.51689 -20.24941 -20.06362 -19.18821 -18.75437 -18.03266 -17.91930 -17.56207 -17.33079 -16.72937 -15.70230 -15.35286 -15.15273 -14.87579 -14.63300 -14.33348 -14.03425 -13.66838 -13.34461 -12.78439 -12.55336 -12.41168 -12.12177 -12.01756 -11.95499 -11.93274 -11.72661 -11.48639 -11.45025 -11.24877 -10.83913 -10.77247 -10.56533 -10.51469 -10.47038 -10.05496 -9.55066 -9.18355 -8.38422 -6.67878 -4.27017 -1.06681 -0.24075 0.22552 0.60584 0.66150 2.24954 2.50831 2.70995 3.19727 3.21056 3.29128 3.42172 3.45057 3.57203 3.75534 3.99449 4.28689 4.32670 4.56251 4.74884 4.80669 4.98442 5.00183 5.25085 5.41859 5.85789 5.87709 6.03000 6.11767 6.48861 6.52841 6.71701 6.90564 7.31780 7.55534 7.99507 8.27278 8.79132 9.40253 10.71732 Molecular weight = 329.06amu Principal moments of inertia in cm(-1) A = 0.013432 B = 0.004210 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.107090 B = 6649.705143 C = 7872.132281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.008 3.992 3 H 0.058 0.942 4 C -0.609 4.609 5 H 0.079 0.921 6 C 0.041 3.959 7 N -0.886 5.886 8 Si 1.031 2.969 9 H -0.281 1.281 10 H -0.280 1.280 11 H -0.276 1.276 12 C 0.545 3.455 13 O -0.484 6.484 14 N -1.054 6.054 15 S 2.683 3.317 16 O -0.941 6.941 17 O -0.915 6.915 18 C -0.699 4.699 19 C 0.037 3.963 20 C -0.127 4.127 21 C 0.224 3.776 22 N 0.018 4.982 23 O -0.144 6.144 24 O -0.102 6.102 25 N -0.442 5.442 26 C 0.244 3.756 27 H 0.070 0.930 28 H 0.031 0.969 29 H 0.048 0.952 30 H 0.274 0.726 31 H 0.435 0.565 32 H 0.180 0.820 33 H 0.177 0.823 34 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.986 1.136 -17.362 18.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.016 4.016 3 H 0.076 0.924 4 C -0.647 4.647 5 H 0.097 0.903 6 C -0.166 4.166 7 N -0.518 5.518 8 Si 0.858 3.142 9 H -0.207 1.207 10 H -0.206 1.206 11 H -0.202 1.202 12 C 0.334 3.666 13 O -0.353 6.353 14 N -0.824 5.824 15 S 2.769 3.231 16 O -0.931 6.931 17 O -0.905 6.905 18 C -0.784 4.784 19 C 0.009 3.991 20 C -0.150 4.150 21 C 0.007 3.993 22 N 0.544 4.456 23 O -0.357 6.357 24 O -0.329 6.329 25 N -0.155 5.155 26 C 0.084 3.916 27 H 0.089 0.911 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.272 0.728 32 H 0.197 0.803 33 H 0.194 0.806 34 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -4.519 1.818 -16.354 17.064 hybrid contribution -1.026 -1.111 -1.287 1.986 sum -5.545 0.707 -17.641 18.505 Atomic orbital electron populations 1.22192 0.96361 1.00591 1.01270 1.19345 0.94054 0.97498 0.90691 0.92406 1.21838 1.41789 1.11768 0.89257 0.90275 1.25714 0.93293 1.05748 0.91880 1.70825 1.42368 1.06749 1.31863 0.84228 0.77153 0.75945 0.76854 1.20666 1.20634 1.20196 1.21879 0.76840 0.84046 0.83854 1.90709 1.34054 1.25256 1.85285 1.55280 1.63757 1.41204 1.22147 1.02834 0.74390 0.72862 0.73016 1.93641 1.80344 1.70714 1.48422 1.93682 1.27354 1.84776 1.84693 1.32525 1.08917 1.26200 1.10791 1.21549 0.90798 0.97126 0.89613 1.21875 1.02376 0.91653 0.99045 1.22027 0.93739 0.84599 0.98922 1.43461 1.00561 1.02094 0.99497 1.94565 1.08276 1.87789 1.45036 1.94628 1.60760 1.36552 1.40985 1.66704 1.08558 1.25188 1.15080 1.22940 0.97982 0.83296 0.87377 0.91148 0.94988 0.93323 0.91622 0.72767 0.80301 0.80573 0.77701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 8.77 37.16 0.33 -2.17 16 2 C 0.01 0.17 2.23 -92.93 -0.21 -0.04 16 3 H 0.06 1.07 6.72 -51.93 -0.35 0.72 16 4 C -0.61 -15.63 8.57 -34.44 -0.30 -15.93 16 5 H 0.08 2.31 7.02 -52.49 -0.37 1.94 16 6 C 0.04 1.09 5.19 -17.82 -0.09 1.00 16 7 N -0.89 -25.49 13.70 55.43 0.76 -24.73 16 8 Si 1.03 22.07 26.45 -169.99 -4.50 17.58 16 9 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 11 H -0.28 -5.17 6.15 56.52 0.35 -4.82 16 12 C 0.54 9.68 6.98 -10.99 -0.08 9.61 16 13 O -0.48 -10.02 12.74 -11.52 -0.15 -10.16 16 14 N -1.05 -13.08 5.60 31.22 0.17 -12.91 16 15 S 2.68 32.80 5.41 -107.50 -0.58 32.22 16 16 O -0.94 -11.10 17.36 -57.17 -0.99 -12.09 16 17 O -0.92 -14.46 16.25 -64.61 -1.05 -15.51 16 18 C -0.70 -8.18 5.75 -39.44 -0.23 -8.41 16 19 C 0.04 0.32 9.65 -39.28 -0.38 -0.06 16 20 C -0.13 -1.20 9.60 -39.44 -0.38 -1.58 16 21 C 0.22 2.97 7.77 -146.20 -1.14 1.84 16 22 N 0.02 0.25 4.45 32.88 0.15 0.40 16 23 O -0.14 -1.88 18.43 -29.46 -0.54 -2.42 16 24 O -0.10 -1.60 19.03 -29.46 -0.56 -2.16 16 25 N -0.44 -6.65 10.05 -10.29 -0.10 -6.76 16 26 C 0.24 3.41 9.72 -17.55 -0.17 3.24 16 27 H 0.07 1.30 5.48 -51.93 -0.28 1.02 16 28 H 0.03 0.39 7.76 -51.93 -0.40 -0.01 16 29 H 0.05 0.84 8.13 -51.93 -0.42 0.41 16 30 H 0.27 7.95 8.73 -40.82 -0.36 7.60 16 31 H 0.43 3.67 8.39 -34.46 -0.29 3.38 16 32 H 0.18 0.88 7.71 -52.48 -0.40 0.48 16 33 H 0.18 1.09 7.61 -52.48 -0.40 0.69 16 34 H 0.21 2.93 6.90 -52.48 -0.36 2.57 16 LS Contribution 318.49 15.07 4.80 4.80 Total: -1.00 -33.71 318.49 -7.72 -41.43 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -2.49 Total: 2.82 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -2.64 Total: -12.50 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: 0.98 Total: -44.00 kcal Atomic # 8 Polarization: -39.05 SS G_CDS: -3.29 Total: -42.35 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.50 Total: 17.58 kcal Atomic # 16 Polarization: 32.80 SS G_CDS: -0.58 Total: 32.22 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.71 -7.72 -41.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850879627.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.585 kcal (2) G-P(sol) polarization free energy of solvation -33.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds