Wall clock time and date at job start Tue Mar 31 2020 05:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47125 * 2 1 4 4 C 1.50695 * 109.46980 * 119.99762 * 2 1 3 5 5 H 1.08001 * 120.00170 * 120.00099 * 4 2 1 6 6 C 1.37879 * 120.00223 * 299.72179 * 4 2 1 7 7 N 1.31512 * 120.00033 * 0.28540 * 6 4 2 8 8 Si 1.86808 * 119.99960 * 180.27414 * 6 4 2 9 9 H 1.48495 * 109.47032 * 60.00841 * 8 6 4 10 10 H 1.48502 * 109.46926 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47282 * 300.00506 * 8 6 4 12 12 C 1.50696 * 109.47174 * 240.00090 * 2 1 3 13 13 O 1.21283 * 119.99820 * 239.99730 * 12 2 1 14 14 N 1.34770 * 120.00273 * 59.99712 * 12 2 1 15 15 S 1.65603 * 120.00297 * 175.06960 * 14 12 2 16 16 O 1.42094 * 106.40480 * 177.20033 * 15 14 12 17 17 O 1.42099 * 106.39957 * 310.12276 * 15 14 12 18 18 C 1.76195 * 107.21597 * 63.66109 * 15 14 12 19 19 C 1.38680 * 120.41752 * 248.58334 * 18 15 14 20 20 C 1.38632 * 118.41412 * 180.02562 * 19 18 15 21 21 C 1.38218 * 119.16645 * 359.97438 * 20 19 18 22 22 N 1.31858 * 120.76421 * 359.97438 * 21 20 19 23 23 C 1.31888 * 121.72449 * 359.70708 * 22 21 20 24 24 N 1.48018 * 119.61482 * 180.30776 * 23 22 21 25 25 O 1.21797 * 119.99295 * 152.77647 * 24 23 22 26 26 O 1.21795 * 120.00258 * 332.77869 * 24 23 22 27 27 H 1.09001 * 109.46651 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46725 * 300.00124 * 1 2 3 29 29 H 1.09001 * 109.46916 * 60.00174 * 1 2 3 30 30 H 0.96997 * 120.00063 * 179.97438 * 7 6 4 31 31 H 0.96997 * 120.00044 * 355.07343 * 14 12 2 32 32 H 1.07998 * 120.78946 * 0.02562 * 19 18 15 33 33 H 1.08000 * 120.41023 * 180.02562 * 20 19 18 34 34 H 1.08006 * 119.61928 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.7040 -0.2359 2.4827 7 7 0.9478 0.8333 2.6034 8 14 2.3330 -1.1121 4.0080 9 1 3.8179 -1.1114 4.0022 10 1 1.8420 -0.4092 5.2205 11 1 1.8387 -2.5124 4.0138 12 6 2.0324 -0.7104 -1.2304 13 8 2.7297 -1.6964 -1.1191 14 7 1.7068 -0.2500 -2.4545 15 16 2.3567 -0.9555 -3.8044 16 8 1.7747 -0.2971 -4.9211 17 8 3.7592 -1.0230 -3.5862 18 6 1.7799 -2.6197 -3.8521 19 6 2.6577 -3.6733 -3.6455 20 6 2.1594 -4.9661 -3.6926 21 6 0.8138 -5.1606 -3.9416 22 7 0.0080 -4.1346 -4.1324 23 6 0.4458 -2.8913 -4.0886 24 7 -0.5014 -1.7742 -4.3028 25 8 -0.2812 -0.6851 -3.8040 26 8 -1.5008 -1.9442 -4.9778 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 0.7165 1.1668 3.4844 31 1 1.0918 0.4947 -2.5448 32 1 3.7046 -3.4909 -3.4525 33 1 2.8143 -5.8104 -3.5359 34 1 0.4179 -6.1648 -3.9803 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851330282.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:06 Heat of formation + Delta-G solvation = -52.904092 kcal Electronic energy + Delta-G solvation = -27170.903053 eV Core-core repulsion = 23007.867423 eV Total energy + Delta-G solvation = -4163.035630 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.061 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.61487 -40.74737 -39.46336 -37.49994 -36.76337 -36.08942 -34.14054 -33.79659 -33.57423 -32.81970 -30.51416 -27.54982 -25.28746 -25.02058 -23.70913 -23.39129 -20.51478 -20.15018 -19.84952 -19.18525 -18.30067 -18.11111 -17.57994 -17.06160 -16.56531 -16.17482 -16.07050 -15.23912 -14.91231 -14.70519 -14.44938 -14.33521 -13.65877 -13.60775 -12.87029 -12.47673 -12.28705 -12.20910 -12.12754 -11.90848 -11.79211 -11.54108 -11.29543 -11.18667 -11.04986 -10.89990 -10.83204 -10.58116 -10.47612 -10.42975 -10.31760 -10.13699 -9.17517 -9.15581 -8.50761 -6.16121 -4.21795 -0.80590 -0.04396 0.15317 0.65225 0.81400 2.49153 2.66925 2.92713 3.27139 3.31140 3.35214 3.44357 3.52685 3.58966 4.05858 4.19798 4.33262 4.41653 4.55861 4.96797 5.16450 5.17003 5.24689 5.49204 5.70476 5.98490 6.49687 6.56966 6.68188 6.71682 7.06053 7.31237 7.38252 7.64998 7.83244 8.04355 8.34458 8.85146 9.44010 10.91148 Molecular weight = 329.06amu Principal moments of inertia in cm(-1) A = 0.015299 B = 0.004781 C = 0.004599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.753151 B = 5854.674607 C = 6086.581713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.033 3.967 3 H 0.069 0.931 4 C -0.513 4.513 5 H 0.075 0.925 6 C 0.063 3.937 7 N -0.891 5.891 8 Si 0.903 3.097 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.540 3.460 13 O -0.506 6.506 14 N -1.034 6.034 15 S 2.682 3.318 16 O -0.937 6.937 17 O -0.925 6.925 18 C -0.664 4.664 19 C 0.047 3.953 20 C -0.145 4.145 21 C 0.162 3.838 22 N -0.444 5.444 23 C 0.270 3.730 24 N 0.020 4.980 25 O -0.147 6.147 26 O -0.082 6.082 27 H 0.030 0.970 28 H 0.100 0.900 29 H 0.024 0.976 30 H 0.264 0.736 31 H 0.442 0.558 32 H 0.181 0.819 33 H 0.170 0.830 34 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.378 -9.339 -13.105 16.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.010 3.990 3 H 0.086 0.914 4 C -0.551 4.551 5 H 0.093 0.907 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.730 3.270 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.203 1.203 12 C 0.330 3.670 13 O -0.378 6.378 14 N -0.806 5.806 15 S 2.766 3.234 16 O -0.927 6.927 17 O -0.915 6.915 18 C -0.750 4.750 19 C 0.021 3.979 20 C -0.166 4.166 21 C 0.006 3.994 22 N -0.157 5.157 23 C 0.050 3.950 24 N 0.547 4.453 25 O -0.355 6.355 26 O -0.314 6.314 27 H 0.049 0.951 28 H 0.118 0.882 29 H 0.043 0.957 30 H 0.074 0.926 31 H 0.282 0.718 32 H 0.198 0.802 33 H 0.188 0.812 34 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 1.007 -10.242 -13.457 16.941 hybrid contribution 0.057 -0.366 1.105 1.166 sum 1.065 -10.608 -12.351 16.316 Atomic orbital electron populations 1.21804 0.95599 1.00088 1.02053 1.19051 0.94736 0.97446 0.87755 0.91362 1.21047 1.32059 1.13205 0.88826 0.90669 1.24936 0.94882 0.94980 0.99127 1.69843 1.36368 1.22657 1.24036 0.86475 0.79378 0.79561 0.81540 1.20029 1.21197 1.20280 1.22353 0.76455 0.83625 0.84564 1.90646 1.35836 1.25577 1.85712 1.55120 1.58883 1.45526 1.21054 1.02916 0.74118 0.72617 0.73772 1.93670 1.78569 1.71362 1.49138 1.93641 1.27557 1.85164 1.85127 1.31783 1.00190 1.29441 1.13567 1.21667 1.01027 0.90370 0.84822 1.22736 0.97380 0.98855 0.97585 1.23205 0.89624 0.97057 0.89560 1.66601 1.40052 0.97316 1.11770 1.20934 0.85780 0.88651 0.99666 1.43296 1.01146 1.01066 0.99827 1.94491 1.79974 1.10568 1.50490 1.94565 1.14700 1.88827 1.33324 0.95121 0.88195 0.95744 0.92579 0.71783 0.80156 0.81249 0.79269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.87 37.16 0.33 -2.66 16 2 C 0.03 0.78 2.64 -92.93 -0.25 0.53 16 3 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 4 C -0.51 -13.60 8.37 -34.44 -0.29 -13.89 16 5 H 0.08 2.06 6.75 -52.49 -0.35 1.70 16 6 C 0.06 1.65 5.31 -17.82 -0.09 1.56 16 7 N -0.89 -23.82 11.33 55.43 0.63 -23.19 16 8 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 9 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 C 0.54 11.31 6.96 -10.99 -0.08 11.23 16 13 O -0.51 -11.37 14.24 -8.82 -0.13 -11.49 16 14 N -1.03 -17.96 4.26 31.22 0.13 -17.82 16 15 S 2.68 44.64 4.55 -107.50 -0.49 44.15 16 16 O -0.94 -16.28 15.64 -66.76 -1.04 -17.33 16 17 O -0.92 -16.85 16.20 -63.80 -1.03 -17.88 16 18 C -0.66 -9.95 5.29 -39.44 -0.21 -10.16 16 19 C 0.05 0.56 9.61 -39.27 -0.38 0.18 16 20 C -0.15 -1.17 10.11 -39.44 -0.40 -1.57 16 21 C 0.16 1.43 11.18 -17.55 -0.20 1.23 16 22 N -0.44 -5.95 10.18 -10.29 -0.10 -6.06 16 23 C 0.27 4.20 7.53 -146.19 -1.10 3.10 16 24 N 0.02 0.33 4.12 32.87 0.14 0.46 16 25 O -0.15 -2.50 12.81 -36.89 -0.47 -2.97 16 26 O -0.08 -1.36 19.12 -29.46 -0.56 -1.92 16 27 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.10 2.39 6.08 -51.93 -0.32 2.08 16 29 H 0.02 0.44 7.46 -51.93 -0.39 0.05 16 30 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 31 H 0.44 6.62 6.95 -34.47 -0.24 6.38 16 32 H 0.18 1.89 7.44 -52.49 -0.39 1.49 16 33 H 0.17 0.61 8.06 -52.49 -0.42 0.18 16 34 H 0.19 0.77 8.06 -52.48 -0.42 0.35 16 LS Contribution 314.57 15.07 4.74 4.74 Total: -1.00 -33.46 314.57 -8.39 -41.85 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -2.51 Total: 2.14 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -2.66 Total: -10.45 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: 0.79 Total: -46.60 kcal Atomic # 8 Polarization: -48.35 SS G_CDS: -3.24 Total: -51.59 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 44.64 SS G_CDS: -0.49 Total: 44.15 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.46 -8.39 -41.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851330282.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.056 kcal (2) G-P(sol) polarization free energy of solvation -33.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds