Wall clock time and date at job start Tue Mar 31 2020 04:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 109.46946 * 2 1 4 4 C 1.46499 * 120.00222 * 269.99366 * 3 2 1 5 5 C 1.50693 * 109.47293 * 270.00220 * 4 3 2 6 6 H 1.07993 * 120.00193 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99922 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99675 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00155 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46933 * 60.00626 * 9 7 5 11 11 H 1.48501 * 109.47095 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47272 * 300.00375 * 9 7 5 13 13 C 1.34781 * 119.99649 * 90.00177 * 3 2 1 14 14 O 1.21285 * 119.99675 * 180.02562 * 13 3 2 15 15 C 1.50698 * 120.00297 * 359.97438 * 13 3 2 16 16 N 1.46898 * 109.47266 * 175.34353 * 15 13 3 17 17 C 1.46892 * 111.00306 * 162.73738 * 16 15 13 18 18 C 1.53001 * 109.47265 * 196.89523 * 17 16 15 19 19 O 1.42892 * 109.47496 * 59.42477 * 18 17 16 20 20 C 1.42902 * 114.00470 * 180.02562 * 19 18 17 21 21 C 1.46904 * 110.99654 * 286.68793 * 16 15 13 22 22 C 1.53169 * 109.54521 * 146.24983 * 21 16 15 23 23 C 1.53090 * 109.16359 * 176.84620 * 22 21 16 24 24 O 1.42905 * 109.41700 * 302.38874 * 23 22 21 25 25 C 1.42904 * 114.09604 * 61.15691 * 24 23 22 26 26 C 1.53093 * 109.41361 * 298.84501 * 25 24 23 27 27 H 1.08999 * 109.47031 * 300.00096 * 1 2 3 28 28 H 1.09003 * 109.46694 * 60.00140 * 1 2 3 29 29 H 1.08996 * 109.46965 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47518 * 240.00003 * 2 1 3 31 31 H 1.08999 * 109.47366 * 119.99596 * 2 1 3 32 32 H 1.09002 * 109.46828 * 30.00669 * 4 3 2 33 33 H 1.09001 * 109.46683 * 149.99700 * 4 3 2 34 34 H 0.97005 * 120.00099 * 180.02562 * 8 7 5 35 35 H 1.08994 * 109.47088 * 55.33826 * 15 13 3 36 36 H 1.09006 * 109.46934 * 295.33606 * 15 13 3 37 37 H 1.09006 * 109.47228 * 316.88689 * 17 16 15 38 38 H 1.09002 * 109.47960 * 76.88550 * 17 16 15 39 39 H 1.08998 * 109.47229 * 179.42623 * 18 17 16 40 40 H 1.09000 * 109.46624 * 299.42192 * 18 17 16 41 41 H 1.09008 * 109.46628 * 299.99860 * 20 19 18 42 42 H 1.08996 * 109.46785 * 59.99500 * 20 19 18 43 43 H 1.08996 * 109.47063 * 180.02562 * 20 19 18 44 44 H 1.09006 * 109.61808 * 26.02160 * 21 16 15 45 45 H 1.09008 * 109.52239 * 296.74759 * 22 21 16 46 46 H 1.08999 * 109.52618 * 56.93917 * 22 21 16 47 47 H 1.09000 * 109.48187 * 182.40446 * 23 22 21 48 48 H 1.09003 * 109.48135 * 62.37205 * 23 22 21 49 49 H 1.08997 * 109.48049 * 178.86111 * 25 24 23 50 50 H 1.08997 * 109.48642 * 58.83282 * 25 24 23 51 51 H 1.08998 * 109.52266 * 297.69972 * 26 25 24 52 52 H 1.09001 * 109.51887 * 177.51305 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2626 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7036 6 1 4.3426 1.2304 -1.0960 7 6 4.1492 2.3898 -2.8778 8 7 3.3492 3.1258 -3.6179 9 14 5.9132 2.0957 -3.4173 10 1 6.1403 0.6389 -3.5947 11 1 6.1604 2.7949 -4.7039 12 1 6.8411 2.6190 -2.3827 13 6 2.2429 2.0166 1.1673 14 8 2.6467 3.1602 1.1673 15 6 1.9913 1.3063 2.4724 16 7 2.4142 2.1650 3.5867 17 6 1.8277 1.7098 4.8542 18 6 1.9293 2.8277 5.8938 19 8 1.2325 3.9823 5.4214 20 6 1.2666 5.0910 6.3224 21 6 3.8792 2.2270 3.6768 22 6 4.3043 3.6152 4.1648 23 6 5.8259 3.6454 4.3309 24 8 6.2244 2.6216 5.2449 25 6 5.8952 1.2981 4.8182 26 6 4.3764 1.1737 4.6717 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.5818 1.6878 -2.0284 33 1 2.0955 3.1411 -1.1383 34 1 3.6750 3.5158 -4.4442 35 1 2.5586 0.3759 2.4949 36 1 0.9279 1.0860 2.5669 37 1 0.7799 1.4529 4.6982 38 1 2.3677 0.8323 5.2101 39 1 1.4850 2.4935 6.8313 40 1 2.9776 3.0775 6.0573 41 1 0.8086 4.8039 7.2690 42 1 2.3012 5.3876 6.4944 43 1 0.7154 5.9266 5.8912 44 1 4.3146 2.0361 2.6958 45 1 4.0027 4.3662 3.4346 46 1 3.8291 3.8259 5.1229 47 1 6.1300 4.6175 4.7188 48 1 6.3005 3.4748 3.3645 49 1 6.2492 0.5794 5.5572 50 1 6.3707 1.0967 3.8583 51 1 3.9026 1.3350 5.6400 52 1 4.1262 0.1786 4.3040 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879708457.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:27 Heat of formation + Delta-G solvation = -101.806826 kcal Electronic energy + Delta-G solvation = -30890.951533 eV Core-core repulsion = 26891.800739 eV Total energy + Delta-G solvation = -3999.150793 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.30112 -38.76644 -37.86152 -36.48494 -35.08137 -32.81113 -31.94685 -31.09415 -30.44880 -29.99642 -27.64805 -26.34492 -25.69905 -24.17072 -23.61507 -22.96614 -22.30550 -21.33228 -19.76955 -18.23716 -16.95351 -16.61418 -16.41933 -16.16240 -16.13222 -15.89988 -15.45321 -15.00062 -14.74877 -14.65931 -14.53134 -14.12390 -13.89935 -13.82804 -13.31555 -13.12345 -12.94823 -12.71465 -12.48839 -12.26543 -11.98352 -11.92907 -11.84451 -11.72767 -11.42938 -11.25695 -11.14810 -11.04817 -10.89941 -10.83666 -10.67960 -10.61306 -10.48102 -10.18591 -10.09530 -9.62083 -9.60616 -9.36592 -8.79545 -8.40509 -7.98737 -7.56569 -6.01240 -4.05895 3.31974 3.36822 3.38660 3.56539 3.60687 3.83199 3.88098 4.22711 4.47041 4.68827 4.84437 4.91484 4.96668 5.03161 5.13913 5.18997 5.21114 5.26780 5.32379 5.33584 5.34614 5.44915 5.45986 5.47230 5.50961 5.53555 5.62488 5.65965 5.67412 5.69778 5.74656 5.76146 5.86021 5.87032 6.05519 6.07955 6.26422 6.32943 6.51123 6.52456 7.01758 7.12387 7.20156 7.22655 7.33619 7.51774 7.63322 7.96086 8.28032 8.53325 8.94664 9.24448 9.59272 11.06639 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.011147 B = 0.004098 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.220886 B = 6830.920126 C = 7946.379114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.108 3.892 3 N -0.602 5.602 4 C 0.249 3.751 5 C -0.524 4.524 6 H 0.054 0.946 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.896 3.104 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.505 3.495 14 O -0.517 6.517 15 C 0.037 3.963 16 N -0.500 5.500 17 C 0.048 3.952 18 C 0.057 3.943 19 O -0.365 6.365 20 C 0.030 3.970 21 C 0.091 3.909 22 C -0.143 4.143 23 C 0.057 3.943 24 O -0.387 6.387 25 C 0.066 3.934 26 C -0.191 4.191 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.030 0.970 33 H 0.043 0.957 34 H 0.263 0.737 35 H 0.054 0.946 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.060 0.940 39 H 0.044 0.956 40 H 0.062 0.938 41 H 0.033 0.967 42 H 0.038 0.962 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.090 0.910 46 H 0.075 0.925 47 H 0.093 0.907 48 H 0.053 0.947 49 H 0.090 0.910 50 H 0.051 0.949 51 H 0.079 0.921 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.634 -5.839 20.035 21.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.336 5.336 4 C 0.130 3.870 5 C -0.563 4.563 6 H 0.073 0.927 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.723 3.277 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.203 1.203 13 C 0.290 3.710 14 O -0.392 6.392 15 C -0.094 4.094 16 N -0.222 5.222 17 C -0.080 4.080 18 C -0.020 4.020 19 O -0.283 6.283 20 C -0.066 4.066 21 C -0.018 4.018 22 C -0.180 4.180 23 C -0.020 4.020 24 O -0.306 6.306 25 C -0.012 4.012 26 C -0.230 4.230 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.079 0.921 32 H 0.048 0.952 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.113 0.887 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.062 0.938 40 H 0.080 0.920 41 H 0.052 0.948 42 H 0.056 0.944 43 H 0.102 0.898 44 H 0.101 0.899 45 H 0.108 0.892 46 H 0.093 0.907 47 H 0.111 0.889 48 H 0.071 0.929 49 H 0.108 0.892 50 H 0.069 0.931 51 H 0.098 0.902 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.620 -4.577 19.722 20.415 hybrid contribution 1.112 -1.153 -0.323 1.634 sum -1.508 -5.730 19.399 20.283 Atomic orbital electron populations 1.22222 0.96893 1.01233 1.02381 1.21378 0.93462 0.84513 1.02339 1.48264 1.64512 1.13097 1.07721 1.19204 0.95987 0.93657 0.78162 1.21386 0.97002 1.31777 1.06157 0.92748 1.24920 0.97671 0.94992 0.96440 1.69925 1.35655 1.33440 1.14326 0.86603 0.85022 0.78182 0.77854 1.20334 1.21173 1.20255 1.20119 0.79065 0.87190 0.84581 1.90670 1.44324 1.17443 1.86758 1.22131 1.01699 0.94325 0.91265 1.61655 1.07933 1.50799 1.01825 1.22334 1.00347 0.95247 0.90110 1.22797 0.96857 0.86954 0.95390 1.88084 1.74732 1.21751 1.43697 1.22711 1.00517 0.90044 0.93375 1.21706 0.87118 0.94443 0.98496 1.22378 0.94799 0.98009 1.02850 1.22696 0.94721 0.91124 0.93425 1.87874 1.80945 1.14902 1.46906 1.22473 0.93826 0.84689 1.00191 1.23007 0.97837 1.00439 1.01685 0.93076 0.92026 0.92344 0.90134 0.92131 0.95245 0.93938 0.92714 0.92830 0.88703 0.90354 0.92233 0.93759 0.91993 0.94830 0.94382 0.89795 0.89907 0.89193 0.90701 0.88919 0.92913 0.89205 0.93096 0.90232 0.91192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 10.24 37.16 0.38 -1.89 16 2 C 0.11 1.71 5.96 -4.04 -0.02 1.69 16 3 N -0.60 -12.69 2.46 -175.06 -0.43 -13.12 16 4 C 0.25 6.54 5.16 -5.20 -0.03 6.52 16 5 C -0.52 -14.85 9.39 -34.44 -0.32 -15.17 16 6 H 0.05 1.53 7.81 -52.49 -0.41 1.12 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -26.74 13.29 55.43 0.74 -26.01 16 9 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 C 0.51 10.53 7.05 -10.98 -0.08 10.45 16 14 O -0.52 -13.09 15.25 5.55 0.08 -13.00 16 15 C 0.04 0.56 4.06 -4.98 -0.02 0.54 16 16 N -0.50 -7.42 3.79 -227.87 -0.86 -8.28 16 17 C 0.05 0.54 4.88 -3.83 -0.02 0.52 16 18 C 0.06 0.63 4.99 37.16 0.19 0.82 16 19 O -0.36 -4.98 10.52 -35.23 -0.37 -5.35 16 20 C 0.03 0.31 11.01 101.05 1.11 1.42 16 21 C 0.09 1.33 1.58 -67.53 -0.11 1.22 16 22 C -0.14 -2.07 5.44 -26.60 -0.14 -2.21 16 23 C 0.06 0.76 6.84 37.20 0.25 1.01 16 24 O -0.39 -5.13 10.77 -35.23 -0.38 -5.51 16 25 C 0.07 0.75 6.84 37.21 0.25 1.00 16 26 C -0.19 -2.14 4.08 -26.59 -0.11 -2.25 16 27 H 0.05 0.66 7.36 -51.93 -0.38 0.28 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 31 H 0.06 0.80 6.31 -51.93 -0.33 0.47 16 32 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 33 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.05 0.72 7.04 -51.93 -0.37 0.35 16 36 H 0.09 1.27 6.90 -51.93 -0.36 0.91 16 37 H 0.08 0.86 7.69 -51.93 -0.40 0.46 16 38 H 0.06 0.56 5.42 -51.93 -0.28 0.28 16 39 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.71 4.21 -51.93 -0.22 0.49 16 41 H 0.03 0.28 8.14 -51.92 -0.42 -0.14 16 42 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.08 1.48 6.91 -51.93 -0.36 1.12 16 45 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 46 H 0.07 1.02 4.56 -51.93 -0.24 0.78 16 47 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 48 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 50 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 51 H 0.08 0.82 5.03 -51.93 -0.26 0.56 16 52 H 0.07 0.71 8.00 -51.93 -0.42 0.30 16 LS Contribution 398.60 15.07 6.01 6.01 Total: -1.00 -34.11 398.60 -8.02 -42.13 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -9.02 Total: 0.90 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: 1.24 Total: 5.34 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: -0.56 Total: -47.41 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -0.67 Total: -23.87 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.11 -8.02 -42.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879708457.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.675 kcal (2) G-P(sol) polarization free energy of solvation -34.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds