Wall clock time and date at job start Tue Mar 31 2020 04:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99940 * 2 1 4 4 C 1.53009 * 109.46833 * 175.09258 * 3 2 1 5 5 N 1.46899 * 109.47154 * 63.66490 * 4 3 2 6 6 C 1.46901 * 110.99641 * 72.13971 * 5 4 3 7 7 C 1.53002 * 109.47053 * 189.99914 * 6 5 4 8 8 C 1.50701 * 109.47424 * 180.02562 * 7 6 5 9 9 O 1.21285 * 119.99381 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00062 * 179.97438 * 8 7 6 11 11 C 1.46495 * 120.00251 * 0.02562 * 10 8 7 12 12 C 1.46504 * 119.99704 * 180.02562 * 10 8 7 13 13 C 1.50695 * 109.47401 * 90.00251 * 12 10 8 14 14 H 1.08005 * 119.99670 * 359.97438 * 13 12 10 15 15 C 1.37876 * 120.00329 * 179.97438 * 13 12 10 16 16 N 1.31517 * 120.00190 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 119.99700 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47163 * 90.00122 * 17 15 13 19 19 H 1.48502 * 109.46987 * 209.99918 * 17 15 13 20 20 H 1.48494 * 109.47380 * 330.00334 * 17 15 13 21 21 C 1.46894 * 110.99781 * 196.09046 * 5 4 3 22 22 C 1.53177 * 109.54823 * 309.57003 * 21 5 4 23 23 C 1.53087 * 109.16493 * 176.84591 * 22 21 5 24 24 O 1.42909 * 109.41608 * 302.39570 * 23 22 21 25 25 C 1.42902 * 114.09607 * 61.16096 * 24 23 22 26 26 C 1.53094 * 109.41195 * 298.83801 * 25 24 23 27 27 H 1.09003 * 109.46963 * 299.99596 * 1 2 3 28 28 H 1.09004 * 109.47374 * 59.99034 * 1 2 3 29 29 H 1.08997 * 109.47419 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47149 * 55.09937 * 3 2 1 31 31 H 1.08991 * 109.47661 * 295.09000 * 3 2 1 32 32 H 1.08996 * 109.46987 * 303.66613 * 4 3 2 33 33 H 1.08999 * 109.46827 * 183.66939 * 4 3 2 34 34 H 1.08996 * 109.47287 * 309.99920 * 6 5 4 35 35 H 1.08998 * 109.47498 * 70.00098 * 6 5 4 36 36 H 1.08996 * 109.47078 * 300.00133 * 7 6 5 37 37 H 1.08998 * 109.46819 * 59.99768 * 7 6 5 38 38 H 1.08998 * 109.46923 * 89.99775 * 11 10 8 39 39 H 1.09002 * 109.47523 * 210.00120 * 11 10 8 40 40 H 1.09003 * 109.47263 * 330.00299 * 11 10 8 41 41 H 1.08999 * 109.46554 * 209.99819 * 12 10 8 42 42 H 1.08996 * 109.46967 * 329.99685 * 12 10 8 43 43 H 0.97000 * 119.99818 * 179.97438 * 16 15 13 44 44 H 1.09002 * 109.61310 * 189.35078 * 21 5 4 45 45 H 1.08999 * 109.52232 * 296.75944 * 22 21 5 46 46 H 1.08998 * 109.51562 * 56.94265 * 22 21 5 47 47 H 1.08994 * 109.48076 * 182.41274 * 23 22 21 48 48 H 1.09004 * 109.48282 * 62.37525 * 23 22 21 49 49 H 1.09004 * 109.48052 * 178.86174 * 25 24 23 50 50 H 1.09000 * 109.49563 * 58.82706 * 25 24 23 51 51 H 1.08999 * 109.52240 * 297.70341 * 26 25 24 52 52 H 1.08996 * 109.52345 * 177.51910 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5307 1.1868 0.1234 5 7 4.0651 0.4934 -1.0563 6 6 4.0063 1.3549 -2.2447 7 6 4.3324 0.5284 -3.4903 8 6 4.2728 1.4123 -4.7095 9 8 3.9961 2.5874 -4.5935 10 7 4.5268 0.8969 -5.9285 11 6 4.8604 -0.5227 -6.0687 12 6 4.4693 1.7563 -7.1136 13 6 5.8276 2.3593 -7.3633 14 1 6.6513 2.1261 -6.7047 15 6 6.0190 3.2088 -8.4323 16 7 7.2043 3.7354 -8.6498 17 14 4.5945 3.6116 -9.5716 18 1 3.8799 4.8109 -9.0657 19 1 5.1137 3.8836 -10.9361 20 1 3.6576 2.4605 -9.6189 21 6 5.4354 0.0229 -0.8144 22 6 6.2837 1.1748 -0.2669 23 6 7.6873 0.6560 0.0560 24 8 7.5926 -0.4192 0.9927 25 6 6.8506 -1.5439 0.5168 26 6 5.4133 -1.1134 0.2126 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6209 1.8765 0.8428 31 1 1.7600 1.8147 -0.9306 32 1 3.7792 0.6207 1.0211 33 1 3.9687 2.1827 0.1890 34 1 3.0052 1.7753 -2.3395 35 1 4.7315 2.1624 -2.1444 36 1 5.3335 0.1080 -3.3955 37 1 3.6072 -0.2791 -3.5906 38 1 3.9464 -1.0978 -6.2168 39 1 5.5183 -0.6584 -6.9271 40 1 5.3648 -0.8682 -5.1662 41 1 4.1706 1.1634 -7.9781 42 1 3.7428 2.5522 -6.9503 43 1 7.3389 4.3328 -9.4021 44 1 5.8686 -0.3374 -1.7475 45 1 6.3505 1.9653 -1.0144 46 1 5.8230 1.5674 0.6396 47 1 8.2826 1.4614 0.4861 48 1 8.1628 0.3006 -0.8583 49 1 6.8430 -2.3232 1.2790 50 1 7.3149 -1.9282 -0.3913 51 1 4.9351 -0.7671 1.1288 52 1 4.8576 -1.9593 -0.1921 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879709063.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:42 Heat of formation + Delta-G solvation = -142.376252 kcal Electronic energy + Delta-G solvation = -29853.056277 eV Core-core repulsion = 25852.146261 eV Total energy + Delta-G solvation = -4000.910016 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.22055 -40.47060 -38.97428 -37.80319 -36.63525 -34.73888 -33.54711 -32.63816 -32.02822 -30.59173 -29.21793 -27.37180 -27.00876 -25.91392 -24.59480 -24.50772 -23.58217 -22.41142 -20.33817 -19.78810 -19.16222 -18.05970 -17.81411 -17.36062 -17.11495 -16.94335 -16.70664 -16.64389 -16.39766 -16.05806 -15.68848 -15.44615 -15.31267 -14.99587 -14.70113 -14.51764 -14.33427 -14.20591 -13.75317 -13.65026 -13.42805 -13.30336 -13.23844 -13.04069 -12.85807 -12.74712 -12.56796 -12.40948 -12.34947 -12.13837 -12.04097 -11.91218 -11.80899 -11.76251 -11.54486 -11.10689 -10.84721 -10.67435 -10.56678 -10.48803 -9.39996 -9.23592 -8.35637 -6.40760 1.31688 1.35522 1.44247 1.79274 2.25555 2.29809 2.81463 2.96209 2.98763 3.00481 3.67452 3.75528 3.85160 3.90742 4.01511 4.07796 4.15507 4.23844 4.25734 4.33619 4.38312 4.41552 4.46634 4.52601 4.58901 4.59782 4.65601 4.66439 4.67876 4.75974 4.80226 4.82548 4.87167 4.88557 4.91189 4.95949 4.96970 4.98557 4.99736 5.12837 5.20439 5.30797 5.44455 5.61064 6.01413 6.08572 6.22253 6.26879 6.36520 6.60271 6.69363 7.19994 7.41149 8.81321 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.011691 B = 0.003215 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.406897 B = 8707.597670 C =10176.485506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.393 6.393 3 C 0.065 3.935 4 C 0.054 3.946 5 N -0.516 5.516 6 C 0.077 3.923 7 C -0.115 4.115 8 C 0.497 3.503 9 O -0.597 6.597 10 N -0.608 5.608 11 C 0.078 3.922 12 C 0.223 3.777 13 C -0.536 4.536 14 H 0.028 0.972 15 C 0.010 3.990 16 N -0.945 5.945 17 Si 0.948 3.052 18 H -0.277 1.277 19 H -0.274 1.274 20 H -0.238 1.238 21 C 0.077 3.923 22 C -0.187 4.187 23 C 0.065 3.935 24 O -0.400 6.400 25 C 0.057 3.943 26 C -0.133 4.133 27 H 0.049 0.951 28 H 0.036 0.964 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.039 0.961 32 H 0.094 0.906 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.024 0.976 36 H 0.103 0.897 37 H 0.120 0.880 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.089 0.911 41 H 0.050 0.950 42 H 0.018 0.982 43 H 0.269 0.731 44 H 0.085 0.915 45 H 0.060 0.940 46 H 0.076 0.924 47 H 0.098 0.902 48 H 0.053 0.947 49 H 0.111 0.889 50 H 0.057 0.943 51 H 0.069 0.931 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.005 -13.735 20.321 26.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.312 6.312 3 C -0.012 4.012 4 C -0.074 4.074 5 N -0.238 5.238 6 C -0.051 4.051 7 C -0.155 4.155 8 C 0.286 3.714 9 O -0.479 6.479 10 N -0.339 5.339 11 C -0.064 4.064 12 C 0.100 3.900 13 C -0.575 4.575 14 H 0.046 0.954 15 C -0.188 4.188 16 N -0.586 5.586 17 Si 0.771 3.229 18 H -0.202 1.202 19 H -0.199 1.199 20 H -0.161 1.161 21 C -0.031 4.031 22 C -0.226 4.226 23 C -0.012 4.012 24 O -0.319 6.319 25 C -0.020 4.020 26 C -0.171 4.171 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.113 0.887 30 H 0.085 0.915 31 H 0.057 0.943 32 H 0.112 0.888 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.042 0.958 36 H 0.121 0.879 37 H 0.138 0.862 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.107 0.893 41 H 0.068 0.932 42 H 0.036 0.964 43 H 0.077 0.923 44 H 0.103 0.897 45 H 0.079 0.921 46 H 0.094 0.906 47 H 0.116 0.884 48 H 0.071 0.929 49 H 0.129 0.871 50 H 0.076 0.924 51 H 0.087 0.913 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.173 -13.631 20.331 26.140 hybrid contribution 0.167 1.907 -1.051 2.184 sum -9.007 -11.724 19.280 24.296 Atomic orbital electron populations 1.22860 0.80574 1.03460 1.00154 1.87940 1.20207 1.27660 1.95380 1.22603 0.93339 0.85060 1.00199 1.22217 0.93175 0.97936 0.94066 1.62172 1.20198 1.38624 1.02841 1.21674 1.01106 0.93282 0.89078 1.21544 1.05189 0.98646 0.90080 1.21334 0.76185 0.88301 0.85563 1.90627 1.51147 1.19467 1.86654 1.47972 1.67608 1.11509 1.06801 1.21966 1.01708 0.78966 1.03802 1.19328 0.95240 0.90746 0.84665 1.21562 0.95779 1.28321 1.11831 0.95376 1.25864 0.98701 0.94878 0.99320 1.70050 1.24576 1.32786 1.31138 0.85705 0.79351 0.79976 0.77863 1.20233 1.19927 1.16094 1.21905 0.87286 0.94687 0.99235 1.22859 0.98093 0.99752 1.01936 1.22518 0.95548 0.89905 0.93216 1.87903 1.74344 1.27252 1.42437 1.22772 0.90201 0.88253 1.00752 1.22143 0.97578 0.98560 0.98793 0.93230 0.94521 0.88707 0.91500 0.94308 0.88825 0.92908 0.91231 0.95805 0.87867 0.86193 0.90231 0.91608 0.89294 0.93221 0.96431 0.92252 0.89739 0.92083 0.90553 0.88362 0.92903 0.87138 0.92424 0.91253 0.89298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.64 16 2 O -0.39 -8.30 10.63 -148.98 -1.58 -9.89 16 3 C 0.07 1.26 6.09 71.99 0.44 1.70 16 4 C 0.05 1.04 3.96 86.31 0.34 1.38 16 5 N -0.52 -11.17 4.32 -870.29 -3.76 -14.92 16 6 C 0.08 2.11 4.00 86.30 0.35 2.45 16 7 C -0.11 -3.17 4.21 29.85 0.13 -3.04 16 8 C 0.50 19.99 7.67 87.66 0.67 20.66 16 9 O -0.60 -29.90 15.56 -3.04 -0.05 -29.95 16 10 N -0.61 -24.60 2.86 -851.15 -2.43 -27.03 16 11 C 0.08 2.18 10.24 127.77 1.31 3.49 16 12 C 0.22 10.92 4.23 85.63 0.36 11.28 16 13 C -0.54 -31.79 9.94 25.60 0.25 -31.53 16 14 H 0.03 1.86 8.06 -2.91 -0.02 1.83 16 15 C 0.01 0.61 5.47 84.65 0.46 1.08 16 16 N -0.95 -60.04 13.96 21.45 0.30 -59.74 16 17 Si 0.95 44.64 27.47 68.60 1.88 46.53 16 18 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 19 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 20 H -0.24 -10.03 6.54 99.48 0.65 -9.38 16 21 C 0.08 1.50 2.14 45.03 0.10 1.60 16 22 C -0.19 -3.78 4.71 30.68 0.14 -3.64 16 23 C 0.07 1.26 6.84 72.01 0.49 1.76 16 24 O -0.40 -8.17 10.77 -148.98 -1.60 -9.77 16 25 C 0.06 0.88 6.84 72.01 0.49 1.37 16 26 C -0.13 -2.14 5.49 30.68 0.17 -1.97 16 27 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.04 0.57 8.14 -2.38 -0.02 0.55 16 29 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.04 0.85 6.49 -2.39 -0.02 0.84 16 32 H 0.09 1.67 6.06 -2.39 -0.01 1.66 16 33 H 0.05 1.03 7.10 -2.39 -0.02 1.01 16 34 H 0.07 2.08 6.32 -2.39 -0.02 2.07 16 35 H 0.02 0.75 6.61 -2.39 -0.02 0.74 16 36 H 0.10 2.52 5.58 -2.39 -0.01 2.51 16 37 H 0.12 2.77 8.11 -2.39 -0.02 2.75 16 38 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.07 1.98 8.07 -2.39 -0.02 1.97 16 40 H 0.09 1.98 6.44 -2.39 -0.02 1.96 16 41 H 0.05 2.23 7.13 -2.39 -0.02 2.21 16 42 H 0.02 0.93 6.85 -2.39 -0.02 0.91 16 43 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 44 H 0.08 1.69 6.01 -2.39 -0.01 1.67 16 45 H 0.06 1.44 6.86 -2.39 -0.02 1.43 16 46 H 0.08 1.49 6.48 -2.39 -0.02 1.48 16 47 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 48 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 49 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 50 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 51 H 0.07 1.17 6.32 -2.39 -0.02 1.16 16 52 H 0.09 1.35 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -78.05 397.37 0.55 -77.50 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: 0.84 Total: 19.04 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: 6.95 Total: 8.23 kcal Atomic # 7 Polarization: -95.81 SS G_CDS: -5.89 Total: -101.70 kcal Atomic # 8 Polarization: -46.37 SS G_CDS: -3.23 Total: -49.61 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.88 Total: 46.53 kcal Total: -78.05 0.55 -77.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879709063.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.877 kcal (2) G-P(sol) polarization free energy of solvation -78.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds