Wall clock time and date at job start Tue Mar 31 2020 04:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00468 * 2 1 4 4 H 1.48498 * 109.47524 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46970 * 299.99957 * 3 2 1 6 6 H 1.48502 * 109.47162 * 59.99546 * 3 2 1 7 7 C 1.37883 * 120.00073 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00198 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99623 * 0.02562 * 7 2 1 10 10 O 1.42907 * 110.77627 * 298.21211 * 9 7 2 11 11 C 1.55156 * 110.72094 * 61.44880 * 9 7 2 12 12 C 1.54906 * 101.61451 * 153.84557 * 11 9 7 13 13 N 1.47471 * 104.81210 * 323.04512 * 12 11 9 14 14 S 1.65600 * 125.62907 * 204.04788 * 13 12 11 15 15 O 1.42100 * 104.27606 * 26.09474 * 14 13 12 16 16 O 1.42097 * 104.27887 * 153.95558 * 14 13 12 17 17 C 1.81406 * 104.44822 * 270.02539 * 14 13 12 18 18 C 1.50708 * 109.46827 * 179.97438 * 17 14 13 19 19 C 1.31325 * 119.99521 * 114.99889 * 18 17 14 20 20 Cl 1.73596 * 120.00350 * 0.02562 * 19 18 17 21 21 Cl 1.73609 * 119.99728 * 179.97438 * 19 18 17 22 22 C 1.47017 * 108.71970 * 24.07007 * 13 12 11 23 23 H 0.97005 * 119.99288 * 0.02562 * 1 2 3 24 24 H 0.96700 * 113.99657 * 61.78848 * 10 9 7 25 25 H 1.09002 * 111.00677 * 271.94141 * 11 9 7 26 26 H 1.09002 * 111.00564 * 35.75399 * 11 9 7 27 27 H 1.09008 * 110.36753 * 81.85112 * 12 11 9 28 28 H 1.09001 * 110.37094 * 204.16995 * 12 11 9 29 29 H 1.08997 * 109.46738 * 299.99605 * 17 14 13 30 30 H 1.09002 * 109.47213 * 60.00216 * 17 14 13 31 31 H 1.07997 * 119.99975 * 294.99984 * 18 17 14 32 32 H 1.08998 * 109.88206 * 239.55467 * 22 13 12 33 33 H 1.09004 * 110.01118 * 118.46560 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 0.4500 -2.6221 1.1777 11 6 0.3763 -2.6281 -1.2745 12 6 0.2717 -4.1661 -1.4268 13 7 1.5929 -4.6763 -1.0159 14 16 2.2563 -6.1207 -1.4806 15 8 1.6421 -6.4024 -2.7307 16 8 3.6582 -5.9097 -1.3842 17 6 1.7020 -7.3003 -0.2188 18 6 2.2477 -8.6688 -0.5362 19 6 3.1083 -9.2371 0.2767 20 17 3.6169 -8.4124 1.7172 21 17 3.7365 -10.8138 -0.0885 22 6 2.2232 -3.6910 -0.1253 23 1 -0.4849 0.8401 -0.0004 24 1 -0.2297 -1.9398 1.2638 25 1 -0.6067 -2.1829 -1.1207 26 1 0.8738 -2.1831 -2.1362 27 1 -0.5068 -4.5599 -0.7732 28 1 0.0675 -4.4316 -2.4640 29 1 2.0632 -6.9825 0.7592 30 1 0.6126 -7.3371 -0.2095 31 1 1.9309 -9.1819 -1.4321 32 1 3.1677 -3.3553 -0.5532 33 1 2.3971 -4.1327 0.8560 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882309385.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:45 Heat of formation + Delta-G solvation = -111.726211 kcal Electronic energy + Delta-G solvation = -22050.153405 eV Core-core repulsion = 18290.550621 eV Total energy + Delta-G solvation = -3759.602784 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 329.009 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.12272 -37.91835 -36.98522 -36.93530 -35.81515 -34.63778 -34.34470 -32.23018 -29.24659 -28.34110 -27.91499 -24.86921 -21.76374 -20.92434 -19.85972 -18.71606 -17.71746 -17.40336 -16.97043 -16.31500 -15.65013 -15.36727 -14.97847 -14.60844 -14.22957 -13.93033 -13.34741 -13.13249 -13.07264 -12.63994 -12.18410 -12.14556 -11.95905 -11.91655 -11.82580 -11.68202 -11.66839 -11.47190 -11.35555 -11.13864 -11.09413 -10.88484 -10.47010 -10.43889 -10.13188 -9.42965 -9.35553 -8.68996 -8.46537 -8.22663 -6.29711 -4.36913 0.14590 0.91929 1.14828 1.96069 2.85537 3.18867 3.28149 3.33144 3.88993 4.10464 4.26140 4.36340 4.68075 4.91868 4.98326 5.29030 5.34457 5.50201 5.77004 5.94370 5.96415 6.16530 6.28596 6.60491 6.72288 6.90745 6.97241 7.33644 7.36889 7.72791 8.01434 8.65910 9.28136 9.37043 10.77785 Molecular weight = 329.01amu Principal moments of inertia in cm(-1) A = 0.024848 B = 0.003306 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.574314 B = 8467.580566 C = 8860.148157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.902 3.098 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.535 4.535 8 H 0.066 0.934 9 C 0.250 3.750 10 O -0.587 6.587 11 C -0.129 4.129 12 C 0.111 3.889 13 N -1.003 6.003 14 S 2.628 3.372 15 O -0.952 6.952 16 O -0.943 6.943 17 C -0.620 4.620 18 C -0.117 4.117 19 C -0.024 4.024 20 Cl -0.023 7.023 21 Cl -0.029 7.029 22 C 0.134 3.866 23 H 0.267 0.733 24 H 0.382 0.618 25 H 0.087 0.913 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.146 0.854 30 H 0.156 0.844 31 H 0.162 0.838 32 H 0.078 0.922 33 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.113 -16.449 0.323 16.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.131 4.131 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.574 4.574 8 H 0.084 0.916 9 C 0.209 3.791 10 O -0.396 6.396 11 C -0.169 4.169 12 C -0.014 4.014 13 N -0.843 5.843 14 S 2.719 3.281 15 O -0.942 6.942 16 O -0.933 6.933 17 C -0.744 4.744 18 C -0.138 4.138 19 C -0.080 4.080 20 Cl 0.005 6.995 21 Cl -0.001 7.001 22 C 0.009 3.991 23 H 0.077 0.923 24 H 0.233 0.767 25 H 0.105 0.895 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.164 0.836 30 H 0.173 0.827 31 H 0.180 0.820 32 H 0.097 0.903 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.024 -17.157 -0.243 17.277 hybrid contribution -0.324 1.077 0.685 1.317 sum 1.699 -16.080 0.441 16.176 Atomic orbital electron populations 1.69708 1.05939 1.27504 1.50325 1.24989 0.95034 0.99530 0.93500 0.86373 0.80231 0.82770 0.77665 1.19558 1.20854 1.20834 1.21589 0.93800 0.90243 1.51748 0.91600 1.19470 0.86878 0.90536 0.82258 1.86100 1.51717 1.56618 1.45132 1.23274 1.02659 0.90143 1.00843 1.22256 0.82518 0.97955 0.98647 1.58501 1.30173 1.32247 1.63335 1.04592 0.74427 0.73698 0.75350 1.93571 1.78317 1.84775 1.37577 1.93597 1.29068 1.83762 1.86862 1.30191 1.13157 1.08510 1.22562 1.22499 0.95927 0.95399 1.00020 1.24188 1.00965 0.89626 0.93182 1.98441 1.89972 1.75345 1.35724 1.98433 1.86442 1.22279 1.92909 1.21904 0.96863 0.88880 0.91409 0.92302 0.76747 0.89453 0.91356 0.92351 0.91232 0.83607 0.82660 0.82030 0.90343 0.92442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.42 10.69 55.43 0.59 -21.83 16 2 C 0.07 1.81 5.28 -17.82 -0.09 1.72 16 3 Si 0.90 19.94 29.54 -169.99 -5.02 14.91 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.54 -13.60 8.22 -34.44 -0.28 -13.88 16 8 H 0.07 1.68 7.57 -52.49 -0.40 1.28 16 9 C 0.25 5.74 0.84 -89.94 -0.08 5.66 16 10 O -0.59 -13.75 13.08 -35.23 -0.46 -14.21 16 11 C -0.13 -2.74 5.46 -24.58 -0.13 -2.87 16 12 C 0.11 1.96 7.07 -2.50 -0.02 1.94 16 13 N -1.00 -17.84 3.62 -111.39 -0.40 -18.24 16 14 S 2.63 41.17 5.63 -107.50 -0.61 40.56 16 15 O -0.95 -16.45 17.28 -57.54 -0.99 -17.45 16 16 O -0.94 -17.33 17.60 -57.54 -1.01 -18.34 16 17 C -0.62 -7.12 6.48 36.01 0.23 -6.89 16 18 C -0.12 -1.23 9.26 -36.10 -0.33 -1.56 16 19 C -0.02 -0.27 6.97 28.93 0.20 -0.06 16 20 Cl -0.02 -0.27 26.92 -51.86 -1.40 -1.66 16 21 Cl -0.03 -0.28 29.06 -51.86 -1.51 -1.78 16 22 C 0.13 2.73 6.24 -3.07 -0.02 2.71 16 23 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 24 H 0.38 9.08 7.49 45.56 0.34 9.42 16 25 H 0.09 1.90 7.54 -51.93 -0.39 1.51 16 26 H 0.07 1.51 8.04 -51.93 -0.42 1.09 16 27 H 0.06 0.93 8.14 -51.92 -0.42 0.50 16 28 H 0.07 1.14 7.67 -51.93 -0.40 0.74 16 29 H 0.15 1.69 6.01 -51.93 -0.31 1.38 16 30 H 0.16 1.39 8.14 -51.92 -0.42 0.97 16 31 H 0.16 1.32 8.06 -52.49 -0.42 0.89 16 32 H 0.08 1.64 7.66 -51.93 -0.40 1.24 16 33 H 0.06 1.10 8.07 -51.93 -0.42 0.68 16 LS Contribution 323.25 15.07 4.87 4.87 Total: -1.00 -28.63 323.25 -9.26 -37.89 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -2.80 Total: 8.51 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: -0.52 Total: -13.23 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: 0.19 Total: -40.07 kcal Atomic # 8 Polarization: -47.53 SS G_CDS: -2.47 Total: -50.00 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.91 kcal Atomic # 16 Polarization: 41.17 SS G_CDS: -0.61 Total: 40.56 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -2.90 Total: -3.45 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.63 -9.26 -37.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882309385.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.841 kcal (2) G-P(sol) polarization free energy of solvation -28.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds