Wall clock time and date at job start Tue Mar 31 2020 04:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47587 * 2 1 4 4 C 1.46496 * 120.00278 * 269.99960 * 3 2 1 5 5 C 1.50695 * 109.47367 * 269.99961 * 4 3 2 6 6 H 1.08003 * 120.00119 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00403 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99700 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00253 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47181 * 89.99888 * 9 7 5 11 11 H 1.48496 * 109.46787 * 209.99827 * 9 7 5 12 12 H 1.48501 * 109.46724 * 329.99634 * 9 7 5 13 13 C 1.34777 * 119.99937 * 89.99677 * 3 2 1 14 14 O 1.21287 * 120.00138 * 179.97438 * 13 3 2 15 15 C 1.50703 * 120.00212 * 0.02562 * 13 3 2 16 16 N 1.46902 * 109.47241 * 179.97438 * 15 13 3 17 17 C 1.46905 * 110.99777 * 179.97438 * 16 15 13 18 18 H 1.09002 * 109.46934 * 325.00338 * 17 16 15 19 19 C 1.53004 * 109.46690 * 85.00078 * 17 16 15 20 20 O 1.42899 * 109.47236 * 64.63953 * 19 17 16 21 21 C 1.42897 * 113.99676 * 179.97438 * 20 19 17 22 22 C 1.52997 * 109.46780 * 204.99761 * 17 16 15 23 23 H 1.08996 * 109.52385 * 295.80441 * 22 17 16 24 24 C 1.53180 * 109.52024 * 175.61772 * 22 17 16 25 25 C 1.53171 * 109.04589 * 183.12185 * 24 22 17 26 26 C 1.53088 * 109.16617 * 56.96482 * 25 24 22 27 27 O 1.42903 * 109.42477 * 302.41031 * 26 25 24 28 28 C 1.42907 * 114.09894 * 61.14835 * 27 26 25 29 29 H 1.09005 * 109.46914 * 300.00437 * 1 2 3 30 30 H 1.08998 * 109.46791 * 59.99691 * 1 2 3 31 31 H 1.08991 * 109.47777 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47042 * 239.99737 * 2 1 3 33 33 H 1.09003 * 109.47262 * 120.00278 * 2 1 3 34 34 H 1.09004 * 109.47050 * 29.99753 * 4 3 2 35 35 H 1.08999 * 109.47521 * 149.99809 * 4 3 2 36 36 H 0.96997 * 119.99839 * 180.02562 * 8 7 5 37 37 H 1.09008 * 109.46988 * 59.99543 * 15 13 3 38 38 H 1.08999 * 109.47060 * 300.00227 * 15 13 3 39 39 H 1.00903 * 110.99602 * 303.95135 * 16 15 13 40 40 H 1.09002 * 109.46632 * 184.63672 * 19 17 16 41 41 H 1.09001 * 109.47261 * 304.63674 * 19 17 16 42 42 H 1.09006 * 109.46601 * 180.02562 * 21 20 19 43 43 H 1.08993 * 109.47680 * 299.99724 * 21 20 19 44 44 H 1.08996 * 109.47237 * 60.00828 * 21 20 19 45 45 H 1.09006 * 109.54656 * 302.98462 * 24 22 17 46 46 H 1.09007 * 109.53921 * 63.24650 * 24 22 17 47 47 H 1.09006 * 109.51677 * 297.06284 * 25 24 22 48 48 H 1.08999 * 109.53185 * 176.87857 * 25 24 22 49 49 H 1.08993 * 109.48461 * 182.41903 * 26 25 24 50 50 H 1.09007 * 109.48264 * 62.39345 * 26 25 24 51 51 H 1.09001 * 109.48004 * 58.82542 * 28 27 26 52 52 H 1.08998 * 109.48296 * 178.86046 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6858 1.8349 -1.7037 6 1 4.3429 1.2307 -1.0957 7 6 4.1493 2.3895 -2.8778 8 7 3.3490 3.1249 -3.6185 9 14 5.9133 2.0953 -3.4175 10 1 5.9761 0.8741 -4.2601 11 1 6.3924 3.2623 -4.2007 12 1 6.7736 1.9156 -2.2204 13 6 2.2430 2.0165 1.1672 14 8 2.6478 3.1598 1.1673 15 6 1.9923 1.3059 2.4724 16 7 2.3110 2.2058 3.5889 17 6 2.0773 1.5455 4.8803 18 1 1.2169 0.8814 4.7983 19 6 3.3141 0.7326 5.2684 20 8 4.4172 1.6157 5.4812 21 6 5.6285 0.9540 5.8508 22 6 1.8052 2.6031 5.9519 23 1 2.6926 3.2215 6.0870 24 6 1.4540 1.9137 7.2739 25 6 1.1078 2.9803 8.3173 26 6 -0.0400 3.8453 7.7900 27 8 0.3408 4.4321 6.5439 28 6 0.6303 3.4825 5.5160 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0275 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.5818 1.6877 -2.0284 35 1 2.0957 3.1410 -1.1384 36 1 3.6748 3.5147 -4.4447 37 1 2.6227 0.4186 2.5299 38 1 0.9444 1.0114 2.5302 39 1 3.2593 2.5438 3.5215 40 1 3.1112 0.1775 6.1843 41 1 3.5566 0.0349 4.4668 42 1 6.4169 1.6929 5.9944 43 1 5.4735 0.4038 6.7788 44 1 5.9193 0.2608 5.0616 45 1 0.5968 1.2567 7.1261 46 1 2.3075 1.3298 7.6185 47 1 1.9809 3.6064 8.5015 48 1 0.8029 2.4968 9.2453 49 1 -0.2620 4.6329 8.5100 50 1 -0.9250 3.2258 7.6446 51 1 -0.2458 2.8580 5.3409 52 1 0.8911 4.0088 4.5978 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886907487.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:41 Heat of formation + Delta-G solvation = -134.070991 kcal Electronic energy + Delta-G solvation = -29805.531216 eV Core-core repulsion = 25804.981343 eV Total energy + Delta-G solvation = -4000.549873 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.95842 -38.99345 -38.15249 -35.97681 -35.16755 -33.62648 -32.76947 -31.50594 -30.07063 -29.08237 -27.63292 -26.36299 -25.69926 -24.71163 -23.69880 -22.99901 -22.24533 -21.05623 -20.17848 -18.34252 -16.84531 -16.68807 -16.41908 -16.32921 -16.07991 -15.84856 -15.56308 -15.44096 -14.92289 -14.70073 -14.44724 -14.38409 -14.04334 -13.52617 -13.39317 -13.28798 -12.94279 -12.87563 -12.59649 -12.32929 -12.18447 -12.00035 -11.90016 -11.79378 -11.59458 -11.40453 -11.31968 -11.15633 -10.96260 -10.89549 -10.74979 -10.68610 -10.50746 -10.30741 -10.10809 -9.86712 -9.60809 -9.47297 -8.86302 -8.41350 -8.25252 -7.61257 -6.01951 -4.06611 3.30544 3.37486 3.40764 3.48830 3.50179 3.80265 3.88892 4.34289 4.47477 4.52477 4.65835 4.71629 4.81159 4.91513 5.01990 5.10245 5.11765 5.15213 5.17742 5.23716 5.26614 5.32153 5.33288 5.39287 5.41515 5.48034 5.51705 5.53273 5.61305 5.66043 5.69046 5.75146 5.82217 5.87317 5.89813 6.02708 6.23870 6.28680 6.33268 6.48989 6.83783 6.98848 7.16974 7.23695 7.48203 7.52091 7.59848 7.94984 8.26678 8.48183 8.93503 9.16979 9.58489 11.06079 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.014167 B = 0.002946 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.993443 B = 9503.220495 C =10153.816263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.600 5.600 4 C 0.248 3.752 5 C -0.525 4.525 6 H 0.055 0.945 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.504 3.496 14 O -0.525 6.525 15 C 0.040 3.960 16 N -0.663 5.663 17 C 0.099 3.901 18 H 0.089 0.911 19 C 0.028 3.972 20 O -0.380 6.380 21 C 0.032 3.968 22 C -0.105 4.105 23 H 0.091 0.909 24 C -0.117 4.117 25 C -0.153 4.153 26 C 0.059 3.941 27 O -0.383 6.383 28 C 0.074 3.926 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.031 0.969 35 H 0.043 0.957 36 H 0.263 0.737 37 H 0.049 0.951 38 H 0.093 0.907 39 H 0.363 0.637 40 H 0.053 0.947 41 H 0.048 0.952 42 H 0.087 0.913 43 H 0.038 0.962 44 H 0.040 0.960 45 H 0.060 0.940 46 H 0.065 0.935 47 H 0.071 0.929 48 H 0.068 0.932 49 H 0.088 0.912 50 H 0.046 0.954 51 H 0.042 0.958 52 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.354 -9.105 22.948 25.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 N -0.333 5.333 4 C 0.129 3.871 5 C -0.564 4.564 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.290 3.710 14 O -0.401 6.401 15 C -0.093 4.093 16 N -0.296 5.296 17 C -0.011 4.011 18 H 0.107 0.893 19 C -0.051 4.051 20 O -0.299 6.299 21 C -0.064 4.064 22 C -0.124 4.124 23 H 0.109 0.891 24 C -0.155 4.155 25 C -0.191 4.191 26 C -0.019 4.019 27 O -0.302 6.302 28 C -0.003 4.003 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.111 0.889 39 H 0.185 0.815 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.105 0.895 43 H 0.056 0.944 44 H 0.059 0.941 45 H 0.079 0.921 46 H 0.083 0.917 47 H 0.090 0.910 48 H 0.087 0.913 49 H 0.106 0.894 50 H 0.064 0.936 51 H 0.060 0.940 52 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.750 -7.654 22.668 24.607 hybrid contribution 1.833 -1.713 -0.298 2.527 sum -3.916 -9.367 22.370 24.566 Atomic orbital electron populations 1.22224 0.96825 1.01281 1.02426 1.21383 0.93493 0.84405 1.02419 1.48245 1.64173 1.13130 1.07734 1.19237 0.96098 0.93701 0.78113 1.21429 0.96984 1.31812 1.06170 0.92634 1.24934 0.97778 0.94951 0.96451 1.69935 1.35648 1.33479 1.14279 0.86512 0.84796 0.77638 0.78549 1.20724 1.21071 1.19961 1.20153 0.78953 0.87109 0.84814 1.90689 1.44865 1.17688 1.86880 1.21959 1.01909 0.94516 0.90882 1.60184 1.33919 1.36392 0.99148 1.21675 0.95002 0.94504 0.89949 0.89346 1.23320 0.88580 0.93299 0.99889 1.87900 1.18675 1.33439 1.89873 1.22738 0.87018 0.98254 0.98412 1.21644 1.00623 0.97082 0.93079 0.89085 1.21662 1.01189 0.97624 0.95017 1.22156 1.00099 0.98304 0.98556 1.22529 0.95512 0.97159 0.86657 1.87983 1.88262 1.33458 1.20500 1.22614 0.95058 0.91693 0.90906 0.93022 0.91988 0.92308 0.90064 0.92083 0.95134 0.93859 0.92740 0.93272 0.88904 0.81517 0.92869 0.93339 0.89488 0.94359 0.94104 0.92121 0.91680 0.91031 0.91296 0.89396 0.93598 0.93967 0.86853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 10.24 37.16 0.38 -1.83 16 2 C 0.11 1.68 5.93 -4.05 -0.02 1.66 16 3 N -0.60 -12.55 2.46 -175.07 -0.43 -12.98 16 4 C 0.25 6.50 5.16 -5.20 -0.03 6.47 16 5 C -0.53 -14.96 9.39 -34.44 -0.32 -15.28 16 6 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.81 13.29 55.43 0.74 -26.07 16 9 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 13 C 0.50 10.41 7.71 -10.98 -0.08 10.33 16 14 O -0.53 -13.36 15.78 5.55 0.09 -13.27 16 15 C 0.04 0.58 4.52 -4.97 -0.02 0.56 16 16 N -0.66 -9.42 4.99 -107.98 -0.54 -9.96 16 17 C 0.10 1.06 2.00 -67.71 -0.14 0.92 16 18 H 0.09 0.81 7.80 -51.93 -0.40 0.41 16 19 C 0.03 0.27 5.23 37.16 0.19 0.47 16 20 O -0.38 -4.44 9.11 -35.23 -0.32 -4.76 16 21 C 0.03 0.29 11.01 101.05 1.11 1.40 16 22 C -0.10 -1.13 2.02 -90.48 -0.18 -1.32 16 23 H 0.09 1.19 7.43 -51.93 -0.39 0.80 16 24 C -0.12 -0.99 4.97 -26.55 -0.13 -1.12 16 25 C -0.15 -1.26 6.14 -26.60 -0.16 -1.42 16 26 C 0.06 0.54 6.84 37.20 0.25 0.80 16 27 O -0.38 -4.95 10.77 -35.23 -0.38 -5.33 16 28 C 0.07 0.90 5.88 37.21 0.22 1.12 16 29 H 0.05 0.64 7.22 -51.93 -0.38 0.27 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 33 H 0.06 0.78 6.44 -51.93 -0.33 0.45 16 34 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 35 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.05 0.64 6.63 -51.92 -0.34 0.30 16 38 H 0.09 1.16 7.10 -51.93 -0.37 0.79 16 39 H 0.36 5.96 7.63 -39.29 -0.30 5.66 16 40 H 0.05 0.43 6.86 -51.93 -0.36 0.08 16 41 H 0.05 0.49 7.36 -51.93 -0.38 0.10 16 42 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.06 0.52 6.83 -51.93 -0.35 0.17 16 47 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 48 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 50 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 51 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 52 H 0.11 1.65 7.59 -51.93 -0.39 1.26 16 LS Contribution 407.87 15.07 6.15 6.15 Total: -1.00 -33.72 407.87 -8.17 -41.89 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -9.42 Total: 2.95 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: 0.97 Total: 4.40 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: -0.23 Total: -49.01 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.61 Total: -23.37 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.72 -8.17 -41.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886907487.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.181 kcal (2) G-P(sol) polarization free energy of solvation -33.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds