Wall clock time and date at job start Tue Mar 31 2020 04:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47587 * 2 1 4 4 C 1.46496 * 120.00278 * 269.99960 * 3 2 1 5 5 C 1.50695 * 109.47367 * 269.99961 * 4 3 2 6 6 H 1.08003 * 120.00119 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00403 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99700 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00253 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47181 * 89.99888 * 9 7 5 11 11 H 1.48496 * 109.46787 * 209.99827 * 9 7 5 12 12 H 1.48501 * 109.46724 * 329.99634 * 9 7 5 13 13 C 1.34777 * 119.99937 * 89.99677 * 3 2 1 14 14 O 1.21287 * 120.00138 * 179.97438 * 13 3 2 15 15 C 1.50703 * 120.00212 * 0.02562 * 13 3 2 16 16 N 1.46902 * 109.47241 * 179.97438 * 15 13 3 17 17 C 1.46905 * 110.99777 * 179.97438 * 16 15 13 18 18 H 1.09002 * 109.46934 * 325.00338 * 17 16 15 19 19 C 1.53004 * 109.46690 * 85.00078 * 17 16 15 20 20 O 1.42899 * 109.47236 * 64.63953 * 19 17 16 21 21 C 1.42897 * 113.99676 * 179.97438 * 20 19 17 22 22 C 1.52997 * 109.46780 * 204.99761 * 17 16 15 23 23 H 1.08996 * 109.52385 * 295.80441 * 22 17 16 24 24 C 1.53180 * 109.52024 * 175.61772 * 22 17 16 25 25 C 1.53171 * 109.04589 * 183.12185 * 24 22 17 26 26 C 1.53088 * 109.16617 * 56.96482 * 25 24 22 27 27 O 1.42903 * 109.42477 * 302.41031 * 26 25 24 28 28 C 1.42907 * 114.09894 * 61.14835 * 27 26 25 29 29 H 1.09005 * 109.46914 * 300.00437 * 1 2 3 30 30 H 1.08998 * 109.46791 * 59.99691 * 1 2 3 31 31 H 1.08991 * 109.47777 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47042 * 239.99737 * 2 1 3 33 33 H 1.09003 * 109.47262 * 120.00278 * 2 1 3 34 34 H 1.09004 * 109.47050 * 29.99753 * 4 3 2 35 35 H 1.08999 * 109.47521 * 149.99809 * 4 3 2 36 36 H 0.96997 * 119.99839 * 180.02562 * 8 7 5 37 37 H 1.09008 * 109.46988 * 59.99543 * 15 13 3 38 38 H 1.08999 * 109.47060 * 300.00227 * 15 13 3 39 39 H 1.00903 * 110.99602 * 303.95135 * 16 15 13 40 40 H 1.09002 * 109.46632 * 184.63672 * 19 17 16 41 41 H 1.09001 * 109.47261 * 304.63674 * 19 17 16 42 42 H 1.09006 * 109.46601 * 180.02562 * 21 20 19 43 43 H 1.08993 * 109.47680 * 299.99724 * 21 20 19 44 44 H 1.08996 * 109.47237 * 60.00828 * 21 20 19 45 45 H 1.09006 * 109.54656 * 302.98462 * 24 22 17 46 46 H 1.09007 * 109.53921 * 63.24650 * 24 22 17 47 47 H 1.09006 * 109.51677 * 297.06284 * 25 24 22 48 48 H 1.08999 * 109.53185 * 176.87857 * 25 24 22 49 49 H 1.08993 * 109.48461 * 182.41903 * 26 25 24 50 50 H 1.09007 * 109.48264 * 62.39345 * 26 25 24 51 51 H 1.09001 * 109.48004 * 58.82542 * 28 27 26 52 52 H 1.08998 * 109.48296 * 178.86046 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6858 1.8349 -1.7037 6 1 4.3429 1.2307 -1.0957 7 6 4.1493 2.3895 -2.8778 8 7 3.3490 3.1249 -3.6185 9 14 5.9133 2.0953 -3.4175 10 1 5.9761 0.8741 -4.2601 11 1 6.3924 3.2623 -4.2007 12 1 6.7736 1.9156 -2.2204 13 6 2.2430 2.0165 1.1672 14 8 2.6478 3.1598 1.1673 15 6 1.9923 1.3059 2.4724 16 7 2.3110 2.2058 3.5889 17 6 2.0773 1.5455 4.8803 18 1 1.2169 0.8814 4.7983 19 6 3.3141 0.7326 5.2684 20 8 4.4172 1.6157 5.4812 21 6 5.6285 0.9540 5.8508 22 6 1.8052 2.6031 5.9519 23 1 2.6926 3.2215 6.0870 24 6 1.4540 1.9137 7.2739 25 6 1.1078 2.9803 8.3173 26 6 -0.0400 3.8453 7.7900 27 8 0.3408 4.4321 6.5439 28 6 0.6303 3.4825 5.5160 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0275 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.5818 1.6877 -2.0284 35 1 2.0957 3.1410 -1.1384 36 1 3.6748 3.5147 -4.4447 37 1 2.6227 0.4186 2.5299 38 1 0.9444 1.0114 2.5302 39 1 3.2593 2.5438 3.5215 40 1 3.1112 0.1775 6.1843 41 1 3.5566 0.0349 4.4668 42 1 6.4169 1.6929 5.9944 43 1 5.4735 0.4038 6.7788 44 1 5.9193 0.2608 5.0616 45 1 0.5968 1.2567 7.1261 46 1 2.3075 1.3298 7.6185 47 1 1.9809 3.6064 8.5015 48 1 0.8029 2.4968 9.2453 49 1 -0.2620 4.6329 8.5100 50 1 -0.9250 3.2258 7.6446 51 1 -0.2458 2.8580 5.3409 52 1 0.8911 4.0088 4.5978 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886907487.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:40 Heat of formation + Delta-G solvation = -158.574725 kcal Electronic energy + Delta-G solvation = -29806.593777 eV Core-core repulsion = 25804.981343 eV Total energy + Delta-G solvation = -4001.612434 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.97248 -40.38973 -39.00864 -37.09836 -36.67288 -34.94715 -34.44110 -32.43148 -31.56618 -30.06496 -29.18717 -27.41680 -26.74293 -25.71566 -24.70742 -24.45068 -23.75648 -21.86475 -21.01555 -19.85719 -18.62466 -17.99463 -17.65472 -17.25479 -17.11969 -17.04701 -16.69928 -16.46167 -16.29849 -15.95815 -15.49549 -15.40610 -15.07902 -14.73206 -14.64544 -14.56449 -14.21028 -13.84163 -13.78540 -13.47812 -13.41599 -13.23119 -13.11040 -12.97863 -12.86131 -12.66319 -12.59979 -12.46193 -12.30139 -12.14247 -12.00417 -11.86085 -11.75759 -11.71470 -11.46710 -11.13109 -10.64424 -10.61377 -10.52421 -10.30212 -9.40372 -9.28765 -8.22169 -6.37302 1.34686 1.38412 1.48417 1.90191 2.26088 2.41851 2.79421 3.06639 3.06932 3.30618 3.73068 3.76329 3.93005 4.01298 4.06416 4.10660 4.19519 4.29846 4.33242 4.35515 4.39742 4.47025 4.49348 4.52305 4.54328 4.57619 4.65621 4.69018 4.73183 4.84344 4.88011 4.95029 4.97316 5.01436 5.03222 5.07056 5.14898 5.18800 5.23908 5.38362 5.41796 5.51288 5.58762 5.86879 6.01262 6.07632 6.24530 6.31866 6.40745 6.71386 6.86532 7.29305 7.56163 8.84801 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.014167 B = 0.002946 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.993443 B = 9503.220495 C =10153.816263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.605 5.605 4 C 0.264 3.736 5 C -0.541 4.541 6 H 0.052 0.948 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.968 3.032 10 H -0.262 1.262 11 H -0.282 1.282 12 H -0.273 1.273 13 C 0.492 3.508 14 O -0.587 6.587 15 C 0.059 3.941 16 N -0.680 5.680 17 C 0.101 3.899 18 H 0.115 0.885 19 C 0.029 3.971 20 O -0.409 6.409 21 C 0.028 3.972 22 C -0.097 4.097 23 H 0.060 0.940 24 C -0.111 4.111 25 C -0.150 4.150 26 C 0.050 3.950 27 O -0.414 6.414 28 C 0.076 3.924 29 H 0.061 0.939 30 H 0.035 0.965 31 H 0.096 0.904 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.020 0.980 35 H -0.008 1.008 36 H 0.267 0.733 37 H 0.076 0.924 38 H 0.124 0.876 39 H 0.347 0.653 40 H 0.079 0.921 41 H 0.051 0.949 42 H 0.086 0.914 43 H 0.058 0.942 44 H 0.040 0.960 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.056 0.944 48 H 0.094 0.906 49 H 0.098 0.902 50 H 0.060 0.940 51 H 0.056 0.944 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.586 -12.519 25.191 28.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.022 4.022 3 N -0.337 5.337 4 C 0.142 3.858 5 C -0.580 4.580 6 H 0.071 0.929 7 C -0.193 4.193 8 N -0.569 5.569 9 Si 0.793 3.207 10 H -0.187 1.187 11 H -0.207 1.207 12 H -0.198 1.198 13 C 0.281 3.719 14 O -0.467 6.467 15 C -0.073 4.073 16 N -0.312 5.312 17 C -0.008 4.008 18 H 0.133 0.867 19 C -0.049 4.049 20 O -0.328 6.328 21 C -0.068 4.068 22 C -0.116 4.116 23 H 0.079 0.921 24 C -0.149 4.149 25 C -0.188 4.188 26 C -0.026 4.026 27 O -0.333 6.333 28 C 0.000 4.000 29 H 0.080 0.920 30 H 0.054 0.946 31 H 0.115 0.885 32 H 0.088 0.912 33 H 0.119 0.881 34 H 0.038 0.962 35 H 0.011 0.989 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.142 0.858 39 H 0.166 0.834 40 H 0.097 0.903 41 H 0.069 0.931 42 H 0.105 0.895 43 H 0.076 0.924 44 H 0.059 0.941 45 H 0.098 0.902 46 H 0.093 0.907 47 H 0.075 0.925 48 H 0.113 0.887 49 H 0.116 0.884 50 H 0.078 0.922 51 H 0.074 0.926 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.017 -11.135 24.939 27.967 hybrid contribution 1.849 -0.596 -0.957 2.166 sum -4.167 -11.731 23.982 27.021 Atomic orbital electron populations 1.22156 0.94571 1.03485 1.01684 1.21738 0.95318 0.81315 1.03830 1.48279 1.64221 1.15103 1.06131 1.18642 0.95161 0.91386 0.80579 1.21706 0.97907 1.31908 1.06433 0.92936 1.25884 1.02433 0.94484 0.96500 1.70062 1.37815 1.34286 1.14758 0.85406 0.78950 0.78201 0.78182 1.18673 1.20731 1.19801 1.21328 0.77340 0.86669 0.86565 1.90655 1.47529 1.20636 1.87906 1.21868 1.04125 0.94118 0.87179 1.60171 1.32877 1.37471 1.00673 1.21800 0.96526 0.94648 0.87840 0.86684 1.23360 0.87578 0.92846 1.01143 1.87884 1.19827 1.34921 1.90181 1.22850 0.86268 0.98349 0.99303 1.21522 0.98599 0.96777 0.94726 0.92109 1.21649 1.02317 0.97666 0.93274 1.22142 0.99080 0.98024 0.99569 1.22778 0.96472 0.97998 0.85334 1.87934 1.88643 1.34797 1.21967 1.22480 0.96199 0.91502 0.89851 0.91953 0.94593 0.88518 0.91194 0.88090 0.96205 0.98943 0.92444 0.90654 0.85791 0.83407 0.90327 0.93128 0.89522 0.92354 0.94097 0.90171 0.90705 0.92471 0.88722 0.88420 0.92167 0.92593 0.90348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.83 10.24 71.98 0.74 -3.09 16 2 C 0.10 2.96 5.93 86.38 0.51 3.47 16 3 N -0.61 -25.73 2.46 -826.18 -2.03 -27.76 16 4 C 0.26 14.60 5.16 85.63 0.44 15.04 16 5 C -0.54 -31.79 9.39 25.60 0.24 -31.55 16 6 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 7 C 0.01 0.34 5.46 84.65 0.46 0.80 16 8 N -0.93 -57.49 13.29 21.45 0.28 -57.21 16 9 Si 0.97 45.68 29.54 68.60 2.03 47.71 16 10 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 13 C 0.49 20.68 7.71 87.66 0.68 21.36 16 14 O -0.59 -31.62 15.78 -3.05 -0.05 -31.67 16 15 C 0.06 1.59 4.52 85.56 0.39 1.98 16 16 N -0.68 -18.96 4.99 -495.54 -2.47 -21.44 16 17 C 0.10 1.92 2.00 44.91 0.09 2.01 16 18 H 0.12 1.59 7.80 -2.39 -0.02 1.57 16 19 C 0.03 0.49 5.23 71.98 0.38 0.86 16 20 O -0.41 -9.11 9.11 -148.98 -1.36 -10.47 16 21 C 0.03 0.47 11.01 113.37 1.25 1.72 16 22 C -0.10 -1.98 2.02 -10.70 -0.02 -2.00 16 23 H 0.06 1.62 7.43 -2.39 -0.02 1.60 16 24 C -0.11 -1.54 4.97 30.71 0.15 -1.39 16 25 C -0.15 -2.11 6.14 30.68 0.19 -1.93 16 26 C 0.05 0.85 6.84 72.01 0.49 1.34 16 27 O -0.41 -10.72 10.77 -148.98 -1.60 -12.32 16 28 C 0.08 1.85 5.88 72.01 0.42 2.28 16 29 H 0.06 1.35 7.22 -2.38 -0.02 1.34 16 30 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.10 1.60 8.14 -2.39 -0.02 1.59 16 32 H 0.07 2.23 8.07 -2.39 -0.02 2.21 16 33 H 0.10 2.19 6.44 -2.39 -0.02 2.17 16 34 H 0.02 1.12 8.07 -2.39 -0.02 1.10 16 35 H -0.01 -0.49 7.42 -2.39 -0.02 -0.51 16 36 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 37 H 0.08 1.68 6.63 -2.38 -0.02 1.67 16 38 H 0.12 2.61 7.10 -2.39 -0.02 2.59 16 39 H 0.35 11.71 7.63 -89.69 -0.68 11.03 16 40 H 0.08 0.94 6.86 -2.39 -0.02 0.93 16 41 H 0.05 0.84 7.36 -2.39 -0.02 0.82 16 42 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 43 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 46 H 0.07 0.92 6.83 -2.38 -0.02 0.91 16 47 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 48 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 50 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 51 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 52 H 0.08 2.43 7.59 -2.39 -0.02 2.41 16 Total: -1.00 -80.02 407.87 1.41 -78.61 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: 0.20 Total: 23.63 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: 6.41 Total: 10.91 kcal Atomic # 7 Polarization: -102.19 SS G_CDS: -4.22 Total: -106.40 kcal Atomic # 8 Polarization: -51.45 SS G_CDS: -3.01 Total: -54.46 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -80.02 1.41 -78.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886907487.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.967 kcal (2) G-P(sol) polarization free energy of solvation -80.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds