Wall clock time and date at job start Tue Mar 31 2020 04:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.47388 * 2 1 4 4 C 1.46495 * 120.00189 * 270.00176 * 3 2 1 5 5 C 1.50703 * 109.47227 * 89.99695 * 4 3 2 6 6 H 1.07999 * 119.99957 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99920 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00226 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99896 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46973 * 89.99808 * 9 7 5 11 11 H 1.48495 * 109.47006 * 209.99834 * 9 7 5 12 12 H 1.48495 * 109.46813 * 329.99937 * 9 7 5 13 13 C 1.34780 * 119.99618 * 89.99910 * 3 2 1 14 14 O 1.21280 * 119.99676 * 179.97438 * 13 3 2 15 15 C 1.50691 * 120.00259 * 0.02562 * 13 3 2 16 16 N 1.46897 * 109.47377 * 179.97438 * 15 13 3 17 17 C 1.46901 * 111.00282 * 180.02562 * 16 15 13 18 18 H 1.09001 * 109.47170 * 34.99805 * 17 16 15 19 19 C 1.52999 * 109.46974 * 275.00020 * 17 16 15 20 20 O 1.42901 * 109.47054 * 295.32908 * 19 17 16 21 21 C 1.42903 * 113.99780 * 180.02562 * 20 19 17 22 22 C 1.53003 * 109.47280 * 154.99883 * 17 16 15 23 23 H 1.09003 * 109.51888 * 55.02443 * 22 17 16 24 24 C 1.53173 * 109.52206 * 175.21262 * 22 17 16 25 25 C 1.53182 * 109.03395 * 176.88702 * 24 22 17 26 26 C 1.53093 * 109.16282 * 303.02042 * 25 24 22 27 27 O 1.42895 * 109.41601 * 57.61127 * 26 25 24 28 28 C 1.42905 * 114.09651 * 298.84383 * 27 26 25 29 29 H 1.08997 * 109.46958 * 300.00076 * 1 2 3 30 30 H 1.08997 * 109.47063 * 59.99703 * 1 2 3 31 31 H 1.08999 * 109.47229 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47063 * 120.00297 * 2 1 3 33 33 H 1.08997 * 109.46958 * 239.99924 * 2 1 3 34 34 H 1.09002 * 109.47352 * 209.99887 * 4 3 2 35 35 H 1.09006 * 109.47104 * 329.99737 * 4 3 2 36 36 H 0.96994 * 120.00179 * 180.02562 * 8 7 5 37 37 H 1.09004 * 109.47621 * 300.00024 * 15 13 3 38 38 H 1.09005 * 109.47271 * 59.99971 * 15 13 3 39 39 H 1.00901 * 110.99835 * 303.95726 * 16 15 13 40 40 H 1.08998 * 109.47348 * 55.32778 * 19 17 16 41 41 H 1.09001 * 109.47050 * 175.33207 * 19 17 16 42 42 H 1.09004 * 109.46873 * 180.02562 * 21 20 19 43 43 H 1.08999 * 109.46699 * 299.99042 * 21 20 19 44 44 H 1.08993 * 109.47102 * 59.99768 * 21 20 19 45 45 H 1.08997 * 109.54459 * 296.75357 * 24 22 17 46 46 H 1.08999 * 109.54474 * 57.02659 * 24 22 17 47 47 H 1.09002 * 109.52091 * 183.11429 * 25 24 22 48 48 H 1.08997 * 109.52296 * 62.92584 * 25 24 22 49 49 H 1.09001 * 109.48183 * 297.62430 * 26 25 24 50 50 H 1.09002 * 109.48651 * 177.59515 * 26 25 24 51 51 H 1.09002 * 109.47822 * 301.17208 * 28 27 26 52 52 H 1.09004 * 109.48869 * 181.14936 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 1.0067 2.7823 -1.7037 6 1 0.1160 2.7254 -1.0957 7 6 0.9950 3.5048 -2.8779 8 7 2.0799 3.5745 -3.6180 9 14 -0.5614 4.3861 -3.4168 10 1 -0.5688 5.7627 -2.8601 11 1 -0.6050 4.4515 -4.8996 12 1 -1.7477 3.6444 -2.9189 13 6 2.2430 2.0165 1.1673 14 8 2.6478 3.1597 1.1673 15 6 1.9924 1.3059 2.4723 16 7 2.3110 2.2057 3.5889 17 6 2.0787 1.5450 4.8802 18 1 2.3302 0.4876 4.7979 19 6 0.6062 1.6901 5.2696 20 8 0.3039 3.0702 5.4837 21 6 -1.0540 3.3170 5.8546 22 6 2.9560 2.1960 5.9514 23 1 2.7680 3.2695 5.9732 24 6 2.6284 1.5897 7.3193 25 6 3.5658 2.1924 8.3703 26 6 5.0170 1.9380 7.9544 27 8 5.2460 2.5005 6.6610 28 6 4.4307 1.9415 5.6290 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.0645 2.7985 -1.1383 35 1 2.5507 1.3451 -2.0284 36 1 2.0718 4.0832 -4.4438 37 1 0.9445 1.0113 2.5303 38 1 2.6229 0.4186 2.5298 39 1 3.2593 2.5438 3.5215 40 1 -0.0216 1.3007 4.4682 41 1 0.4156 1.1301 6.1852 42 1 -1.2026 4.3873 5.9982 43 1 -1.7164 2.9614 5.0655 44 1 -1.2785 2.7909 6.7823 45 1 1.5946 1.8158 7.5802 46 1 2.7687 0.5094 7.2824 47 1 3.3768 1.7260 9.3372 48 1 3.3903 3.2658 8.4421 49 1 5.2030 0.8644 7.9221 50 1 5.6889 2.4018 8.6767 51 1 4.6091 0.8680 5.5662 52 1 4.6802 2.4078 4.6758 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886907488.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:43 Heat of formation + Delta-G solvation = -128.811837 kcal Electronic energy + Delta-G solvation = -29870.910548 eV Core-core repulsion = 25870.588729 eV Total energy + Delta-G solvation = -4000.321819 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.09535 -39.01070 -37.97060 -36.04417 -35.16974 -33.71014 -32.70808 -31.56620 -29.95736 -29.10936 -27.75571 -26.27131 -25.86991 -24.76482 -23.76140 -22.73469 -22.35979 -21.01028 -20.14387 -18.40069 -16.99543 -16.72543 -16.52007 -16.38234 -16.10370 -15.72163 -15.52981 -15.29467 -14.87702 -14.81914 -14.45420 -14.31590 -14.07519 -13.65043 -13.41551 -13.15295 -12.98847 -12.96683 -12.66637 -12.37934 -12.15384 -12.02877 -11.74409 -11.71485 -11.44684 -11.42910 -11.31359 -11.16372 -11.08090 -10.86360 -10.77984 -10.68337 -10.47785 -10.38706 -10.01135 -9.65133 -9.57653 -9.53510 -8.85058 -8.38418 -8.26208 -7.61246 -5.99576 -4.03177 3.34432 3.40156 3.40964 3.48689 3.63443 3.69762 3.86293 4.28676 4.44429 4.49623 4.54088 4.61510 4.67783 4.89198 5.03442 5.08675 5.11373 5.18970 5.21914 5.26881 5.31456 5.32703 5.33866 5.35671 5.38926 5.46618 5.50612 5.53524 5.59569 5.65515 5.67129 5.73030 5.79957 5.83214 5.86469 5.93689 6.11282 6.22231 6.32272 6.76888 6.90711 6.98224 7.13497 7.25469 7.44380 7.49459 7.61784 7.97494 8.29304 8.47943 8.96571 9.17512 9.61529 11.08686 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.015435 B = 0.002896 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.630200 B = 9667.244985 C =10176.836491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.112 3.888 3 N -0.601 5.601 4 C 0.247 3.753 5 C -0.520 4.520 6 H 0.058 0.942 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.896 3.104 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.275 1.275 13 C 0.504 3.496 14 O -0.525 6.525 15 C 0.040 3.960 16 N -0.658 5.658 17 C 0.098 3.902 18 H 0.056 0.944 19 C 0.073 3.927 20 O -0.366 6.366 21 C 0.031 3.969 22 C -0.120 4.120 23 H 0.102 0.898 24 C -0.114 4.114 25 C -0.155 4.155 26 C 0.058 3.942 27 O -0.377 6.377 28 C 0.061 3.939 29 H 0.047 0.953 30 H 0.076 0.924 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.042 0.958 35 H 0.030 0.970 36 H 0.262 0.738 37 H 0.093 0.907 38 H 0.049 0.951 39 H 0.351 0.649 40 H 0.048 0.952 41 H 0.048 0.952 42 H 0.083 0.917 43 H 0.039 0.961 44 H 0.033 0.967 45 H 0.072 0.928 46 H 0.060 0.940 47 H 0.071 0.929 48 H 0.073 0.927 49 H 0.047 0.953 50 H 0.091 0.909 51 H 0.047 0.953 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.520 -10.776 23.438 25.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.012 4.012 3 N -0.334 5.334 4 C 0.128 3.872 5 C -0.559 4.559 6 H 0.077 0.923 7 C -0.142 4.142 8 N -0.536 5.536 9 Si 0.724 3.276 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.200 1.200 13 C 0.290 3.710 14 O -0.400 6.400 15 C -0.092 4.092 16 N -0.293 5.293 17 C -0.012 4.012 18 H 0.074 0.926 19 C -0.004 4.004 20 O -0.284 6.284 21 C -0.066 4.066 22 C -0.139 4.139 23 H 0.120 0.880 24 C -0.152 4.152 25 C -0.192 4.192 26 C -0.018 4.018 27 O -0.296 6.296 28 C -0.016 4.016 29 H 0.067 0.933 30 H 0.095 0.905 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.060 0.940 35 H 0.048 0.952 36 H 0.072 0.928 37 H 0.111 0.889 38 H 0.067 0.933 39 H 0.173 0.827 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.102 0.898 43 H 0.057 0.943 44 H 0.052 0.948 45 H 0.091 0.909 46 H 0.078 0.922 47 H 0.090 0.910 48 H 0.092 0.908 49 H 0.066 0.934 50 H 0.110 0.890 51 H 0.066 0.934 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.544 -9.478 23.160 25.030 hybrid contribution -0.834 -0.651 -0.356 1.117 sum -1.378 -10.129 22.804 24.990 Atomic orbital electron populations 1.22233 0.96420 1.00750 1.03421 1.21364 0.94521 0.83895 1.01452 1.48268 1.64246 1.13132 1.07742 1.19265 0.97512 0.92410 0.78004 1.21448 0.97543 1.30925 1.05994 0.92348 1.24932 0.96425 0.96304 0.96510 1.69929 1.27483 1.41738 1.14422 0.86530 0.83298 0.80339 0.77442 1.20557 1.21249 1.19998 1.20128 0.79107 0.86974 0.84791 1.90688 1.45364 1.17140 1.86857 1.21988 1.02309 0.94057 0.90852 1.60068 1.32699 1.37343 0.99164 1.21547 0.94030 0.96076 0.89546 0.92645 1.22543 0.95684 0.83721 0.98499 1.88020 1.26622 1.24162 1.89580 1.22708 0.83969 1.01899 0.98022 1.21855 0.94430 1.03398 0.94186 0.88012 1.21631 1.00033 0.99468 0.94028 1.22180 0.95747 1.02429 0.98888 1.22584 0.96078 0.97882 0.85294 1.87976 1.61268 1.63695 1.16643 1.22720 0.89678 0.97813 0.91425 0.93346 0.90506 0.92933 0.92312 0.90746 0.93958 0.95169 0.92808 0.88871 0.93296 0.82655 0.93426 0.93430 0.89810 0.94263 0.94838 0.90950 0.92156 0.91048 0.90790 0.93431 0.89036 0.93445 0.88585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.58 10.24 37.16 0.38 -2.20 16 2 C 0.11 1.77 5.98 -4.04 -0.02 1.74 16 3 N -0.60 -12.62 2.46 -175.06 -0.43 -13.05 16 4 C 0.25 6.48 5.20 -5.19 -0.03 6.45 16 5 C -0.52 -14.79 8.92 -34.44 -0.31 -15.09 16 6 H 0.06 1.66 7.42 -52.49 -0.39 1.27 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 9 Si 0.90 22.21 29.54 -169.99 -5.02 17.19 16 10 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 12 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.50 10.52 7.71 -10.99 -0.08 10.44 16 14 O -0.52 -13.46 15.78 5.56 0.09 -13.37 16 15 C 0.04 0.60 4.52 -4.98 -0.02 0.58 16 16 N -0.66 -9.65 5.88 -107.99 -0.63 -10.29 16 17 C 0.10 1.08 2.03 -67.71 -0.14 0.94 16 18 H 0.06 0.52 7.80 -51.93 -0.40 0.11 16 19 C 0.07 0.80 5.05 37.16 0.19 0.98 16 20 O -0.37 -4.81 9.88 -35.23 -0.35 -5.16 16 21 C 0.03 0.31 11.01 101.05 1.11 1.43 16 22 C -0.12 -1.24 1.82 -90.49 -0.16 -1.41 16 23 H 0.10 1.33 7.74 -51.93 -0.40 0.93 16 24 C -0.11 -0.93 4.72 -26.55 -0.13 -1.06 16 25 C -0.15 -1.19 6.14 -26.59 -0.16 -1.35 16 26 C 0.06 0.49 6.84 37.21 0.25 0.74 16 27 O -0.38 -4.38 10.77 -35.23 -0.38 -4.76 16 28 C 0.06 0.64 5.91 37.20 0.22 0.86 16 29 H 0.05 0.72 7.22 -51.93 -0.38 0.35 16 30 H 0.08 1.41 7.26 -51.93 -0.38 1.04 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.73 6.44 -51.93 -0.33 0.39 16 33 H 0.07 1.15 7.89 -51.93 -0.41 0.74 16 34 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 35 H 0.03 0.80 7.89 -51.93 -0.41 0.39 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.09 1.31 6.41 -51.93 -0.33 0.97 16 38 H 0.05 0.60 7.31 -51.93 -0.38 0.22 16 39 H 0.35 5.34 6.21 -39.29 -0.24 5.10 16 40 H 0.05 0.54 7.36 -51.93 -0.38 0.16 16 41 H 0.05 0.41 6.71 -51.93 -0.35 0.06 16 42 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.07 0.60 6.66 -51.93 -0.35 0.25 16 46 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 50 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 51 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 52 H 0.10 1.10 6.52 -51.93 -0.34 0.76 16 LS Contribution 404.46 15.07 6.10 6.10 Total: -1.00 -34.59 404.46 -8.11 -42.71 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -9.22 Total: 2.12 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: 1.00 Total: 4.69 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: -0.33 Total: -49.51 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.64 Total: -23.29 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.59 -8.11 -42.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886907488.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.103 kcal (2) G-P(sol) polarization free energy of solvation -34.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds