Wall clock time and date at job start Tue Mar 31 2020 04:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.47388 * 2 1 4 4 C 1.46495 * 120.00189 * 270.00176 * 3 2 1 5 5 C 1.50703 * 109.47227 * 89.99695 * 4 3 2 6 6 H 1.07999 * 119.99957 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99920 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00226 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99896 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46973 * 89.99808 * 9 7 5 11 11 H 1.48495 * 109.47006 * 209.99834 * 9 7 5 12 12 H 1.48495 * 109.46813 * 329.99937 * 9 7 5 13 13 C 1.34780 * 119.99618 * 89.99910 * 3 2 1 14 14 O 1.21280 * 119.99676 * 179.97438 * 13 3 2 15 15 C 1.50691 * 120.00259 * 0.02562 * 13 3 2 16 16 N 1.46897 * 109.47377 * 179.97438 * 15 13 3 17 17 C 1.46901 * 111.00282 * 180.02562 * 16 15 13 18 18 H 1.09001 * 109.47170 * 34.99805 * 17 16 15 19 19 C 1.52999 * 109.46974 * 275.00020 * 17 16 15 20 20 O 1.42901 * 109.47054 * 295.32908 * 19 17 16 21 21 C 1.42903 * 113.99780 * 180.02562 * 20 19 17 22 22 C 1.53003 * 109.47280 * 154.99883 * 17 16 15 23 23 H 1.09003 * 109.51888 * 55.02443 * 22 17 16 24 24 C 1.53173 * 109.52206 * 175.21262 * 22 17 16 25 25 C 1.53182 * 109.03395 * 176.88702 * 24 22 17 26 26 C 1.53093 * 109.16282 * 303.02042 * 25 24 22 27 27 O 1.42895 * 109.41601 * 57.61127 * 26 25 24 28 28 C 1.42905 * 114.09651 * 298.84383 * 27 26 25 29 29 H 1.08997 * 109.46958 * 300.00076 * 1 2 3 30 30 H 1.08997 * 109.47063 * 59.99703 * 1 2 3 31 31 H 1.08999 * 109.47229 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47063 * 120.00297 * 2 1 3 33 33 H 1.08997 * 109.46958 * 239.99924 * 2 1 3 34 34 H 1.09002 * 109.47352 * 209.99887 * 4 3 2 35 35 H 1.09006 * 109.47104 * 329.99737 * 4 3 2 36 36 H 0.96994 * 120.00179 * 180.02562 * 8 7 5 37 37 H 1.09004 * 109.47621 * 300.00024 * 15 13 3 38 38 H 1.09005 * 109.47271 * 59.99971 * 15 13 3 39 39 H 1.00901 * 110.99835 * 303.95726 * 16 15 13 40 40 H 1.08998 * 109.47348 * 55.32778 * 19 17 16 41 41 H 1.09001 * 109.47050 * 175.33207 * 19 17 16 42 42 H 1.09004 * 109.46873 * 180.02562 * 21 20 19 43 43 H 1.08999 * 109.46699 * 299.99042 * 21 20 19 44 44 H 1.08993 * 109.47102 * 59.99768 * 21 20 19 45 45 H 1.08997 * 109.54459 * 296.75357 * 24 22 17 46 46 H 1.08999 * 109.54474 * 57.02659 * 24 22 17 47 47 H 1.09002 * 109.52091 * 183.11429 * 25 24 22 48 48 H 1.08997 * 109.52296 * 62.92584 * 25 24 22 49 49 H 1.09001 * 109.48183 * 297.62430 * 26 25 24 50 50 H 1.09002 * 109.48651 * 177.59515 * 26 25 24 51 51 H 1.09002 * 109.47822 * 301.17208 * 28 27 26 52 52 H 1.09004 * 109.48869 * 181.14936 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 1.0067 2.7823 -1.7037 6 1 0.1160 2.7254 -1.0957 7 6 0.9950 3.5048 -2.8779 8 7 2.0799 3.5745 -3.6180 9 14 -0.5614 4.3861 -3.4168 10 1 -0.5688 5.7627 -2.8601 11 1 -0.6050 4.4515 -4.8996 12 1 -1.7477 3.6444 -2.9189 13 6 2.2430 2.0165 1.1673 14 8 2.6478 3.1597 1.1673 15 6 1.9924 1.3059 2.4723 16 7 2.3110 2.2057 3.5889 17 6 2.0787 1.5450 4.8802 18 1 2.3302 0.4876 4.7979 19 6 0.6062 1.6901 5.2696 20 8 0.3039 3.0702 5.4837 21 6 -1.0540 3.3170 5.8546 22 6 2.9560 2.1960 5.9514 23 1 2.7680 3.2695 5.9732 24 6 2.6284 1.5897 7.3193 25 6 3.5658 2.1924 8.3703 26 6 5.0170 1.9380 7.9544 27 8 5.2460 2.5005 6.6610 28 6 4.4307 1.9415 5.6290 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.0645 2.7985 -1.1383 35 1 2.5507 1.3451 -2.0284 36 1 2.0718 4.0832 -4.4438 37 1 0.9445 1.0113 2.5303 38 1 2.6229 0.4186 2.5298 39 1 3.2593 2.5438 3.5215 40 1 -0.0216 1.3007 4.4682 41 1 0.4156 1.1301 6.1852 42 1 -1.2026 4.3873 5.9982 43 1 -1.7164 2.9614 5.0655 44 1 -1.2785 2.7909 6.7823 45 1 1.5946 1.8158 7.5802 46 1 2.7687 0.5094 7.2824 47 1 3.3768 1.7260 9.3372 48 1 3.3903 3.2658 8.4421 49 1 5.2030 0.8644 7.9221 50 1 5.6889 2.4018 8.6767 51 1 4.6091 0.8680 5.5662 52 1 4.6802 2.4078 4.6758 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886907488.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:42 Heat of formation + Delta-G solvation = -154.579406 kcal Electronic energy + Delta-G solvation = -29872.027914 eV Core-core repulsion = 25870.588729 eV Total energy + Delta-G solvation = -4001.439184 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.03252 -40.44405 -38.84826 -37.16088 -36.71721 -34.90082 -34.46843 -32.45837 -31.48675 -30.05985 -29.35632 -27.50351 -26.79515 -25.72910 -24.68432 -24.30615 -23.86194 -21.80596 -20.94734 -19.88933 -18.68527 -18.11694 -17.66108 -17.50524 -17.04669 -16.96940 -16.63479 -16.40445 -16.14351 -15.93606 -15.56226 -15.41801 -15.12743 -14.82165 -14.62828 -14.53193 -14.07239 -14.01583 -13.73528 -13.68885 -13.55608 -13.29826 -13.06689 -12.97212 -12.80971 -12.67599 -12.54467 -12.45368 -12.20899 -12.12887 -12.02731 -11.82133 -11.75913 -11.62655 -11.49959 -11.12683 -10.62890 -10.52684 -10.45892 -10.33456 -9.42147 -9.29241 -8.20623 -6.33512 1.34527 1.38522 1.47161 1.87650 2.28743 2.42025 2.91962 2.98652 3.08878 3.20873 3.67285 3.74451 3.84162 3.88771 4.04528 4.12190 4.21363 4.30136 4.30370 4.36525 4.41277 4.48739 4.50567 4.52953 4.56823 4.60864 4.62199 4.67773 4.70749 4.78780 4.82491 4.89760 4.93503 4.97645 5.03583 5.06575 5.07808 5.16176 5.25028 5.27884 5.46333 5.52185 5.62331 5.87679 6.02296 6.10091 6.27317 6.31488 6.45912 6.74154 6.86205 7.31699 7.55915 8.86571 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.015435 B = 0.002896 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.630200 B = 9667.244985 C =10176.836491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.104 3.896 3 N -0.605 5.605 4 C 0.262 3.738 5 C -0.531 4.531 6 H 0.053 0.947 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.962 3.038 10 H -0.284 1.284 11 H -0.274 1.274 12 H -0.262 1.262 13 C 0.493 3.507 14 O -0.587 6.587 15 C 0.059 3.941 16 N -0.684 5.684 17 C 0.100 3.900 18 H 0.086 0.914 19 C 0.069 3.931 20 O -0.399 6.399 21 C 0.027 3.973 22 C -0.111 4.111 23 H 0.065 0.935 24 C -0.109 4.109 25 C -0.152 4.152 26 C 0.051 3.949 27 O -0.406 6.406 28 C 0.061 3.939 29 H 0.050 0.950 30 H 0.036 0.964 31 H 0.093 0.907 32 H 0.107 0.893 33 H 0.076 0.924 34 H -0.006 1.006 35 H 0.022 0.978 36 H 0.266 0.734 37 H 0.111 0.889 38 H 0.089 0.911 39 H 0.344 0.656 40 H 0.044 0.956 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.036 0.964 44 H 0.057 0.943 45 H 0.074 0.926 46 H 0.082 0.918 47 H 0.095 0.905 48 H 0.056 0.944 49 H 0.064 0.936 50 H 0.100 0.900 51 H 0.068 0.932 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.123 -13.692 25.660 29.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.018 4.018 3 N -0.337 5.337 4 C 0.140 3.860 5 C -0.570 4.570 6 H 0.071 0.929 7 C -0.193 4.193 8 N -0.571 5.571 9 Si 0.787 3.213 10 H -0.210 1.210 11 H -0.199 1.199 12 H -0.186 1.186 13 C 0.282 3.718 14 O -0.467 6.467 15 C -0.073 4.073 16 N -0.318 5.318 17 C -0.009 4.009 18 H 0.104 0.896 19 C -0.008 4.008 20 O -0.318 6.318 21 C -0.069 4.069 22 C -0.130 4.130 23 H 0.083 0.917 24 C -0.147 4.147 25 C -0.190 4.190 26 C -0.025 4.025 27 O -0.326 6.326 28 C -0.016 4.016 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.112 0.888 32 H 0.125 0.875 33 H 0.094 0.906 34 H 0.012 0.988 35 H 0.040 0.960 36 H 0.075 0.925 37 H 0.128 0.872 38 H 0.107 0.893 39 H 0.165 0.835 40 H 0.062 0.938 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.055 0.945 44 H 0.076 0.924 45 H 0.092 0.908 46 H 0.100 0.900 47 H 0.114 0.886 48 H 0.075 0.925 49 H 0.082 0.918 50 H 0.119 0.881 51 H 0.086 0.914 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.177 -12.456 25.409 28.382 hybrid contribution -0.282 0.250 -1.002 1.071 sum -2.459 -12.206 24.407 27.400 Atomic orbital electron populations 1.22155 0.95667 1.02797 1.01505 1.21748 0.95105 0.81015 1.03920 1.48293 1.64242 1.15072 1.06135 1.18707 0.95286 0.91506 0.80470 1.21697 0.97933 1.31270 1.06083 0.92880 1.25829 0.99745 0.97063 0.96662 1.70046 1.29546 1.42561 1.14903 0.85492 0.79648 0.78603 0.77543 1.20984 1.19919 1.18585 1.21290 0.77443 0.86563 0.86542 1.90652 1.47985 1.20148 1.87893 1.21876 1.03969 0.94247 0.87217 1.60051 1.32477 1.38626 1.00694 1.21689 0.94366 0.97277 0.87566 0.89601 1.22711 0.95290 0.83049 0.99763 1.87990 1.28044 1.25786 1.89938 1.22813 0.82799 1.02285 0.99011 1.21711 0.94245 1.01385 0.95656 0.91664 1.21624 1.00148 1.00512 0.92384 1.22164 0.95228 1.01598 0.99962 1.22811 0.96788 0.98853 0.84023 1.87937 1.61801 1.64730 1.18099 1.22693 0.89679 0.98613 0.90605 0.93131 0.94497 0.88834 0.87506 0.90585 0.98807 0.95967 0.92546 0.87162 0.89343 0.83518 0.93773 0.90485 0.89979 0.94537 0.92406 0.90752 0.89967 0.88628 0.92541 0.91756 0.88144 0.91395 0.90556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.55 10.24 71.98 0.74 -3.82 16 2 C 0.10 3.05 5.98 86.38 0.52 3.57 16 3 N -0.61 -25.62 2.46 -826.16 -2.03 -27.65 16 4 C 0.26 14.37 5.20 85.63 0.45 14.81 16 5 C -0.53 -31.17 8.92 25.60 0.23 -30.94 16 6 H 0.05 3.10 7.42 -2.91 -0.02 3.08 16 7 C 0.01 0.32 5.46 84.65 0.46 0.78 16 8 N -0.93 -57.57 13.29 21.45 0.28 -57.28 16 9 Si 0.96 46.25 29.54 68.60 2.03 48.27 16 10 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 11 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 12 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 13 C 0.49 20.78 7.71 87.65 0.68 21.46 16 14 O -0.59 -31.67 15.78 -3.03 -0.05 -31.72 16 15 C 0.06 1.62 4.52 85.55 0.39 2.01 16 16 N -0.68 -19.52 5.88 -495.58 -2.91 -22.43 16 17 C 0.10 1.95 2.03 44.92 0.09 2.04 16 18 H 0.09 1.18 7.80 -2.39 -0.02 1.16 16 19 C 0.07 1.32 5.05 71.98 0.36 1.68 16 20 O -0.40 -10.12 9.88 -148.98 -1.47 -11.59 16 21 C 0.03 0.52 11.01 113.37 1.25 1.77 16 22 C -0.11 -2.17 1.82 -10.71 -0.02 -2.19 16 23 H 0.06 1.76 7.74 -2.39 -0.02 1.75 16 24 C -0.11 -1.47 4.72 30.71 0.14 -1.33 16 25 C -0.15 -2.00 6.14 30.69 0.19 -1.81 16 26 C 0.05 0.76 6.84 72.01 0.49 1.25 16 27 O -0.41 -9.25 10.77 -148.98 -1.60 -10.85 16 28 C 0.06 1.24 5.91 72.01 0.43 1.66 16 29 H 0.05 1.38 7.22 -2.39 -0.02 1.36 16 30 H 0.04 1.32 7.26 -2.39 -0.02 1.30 16 31 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.11 2.14 6.44 -2.39 -0.02 2.12 16 33 H 0.08 2.21 7.89 -2.39 -0.02 2.19 16 34 H -0.01 -0.40 7.42 -2.39 -0.02 -0.41 16 35 H 0.02 1.24 7.89 -2.38 -0.02 1.22 16 36 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 37 H 0.11 2.71 6.41 -2.38 -0.02 2.69 16 38 H 0.09 1.76 7.31 -2.38 -0.02 1.75 16 39 H 0.34 10.69 6.21 -89.69 -0.56 10.13 16 40 H 0.04 0.87 7.36 -2.39 -0.02 0.85 16 41 H 0.08 1.01 6.71 -2.39 -0.02 1.00 16 42 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 43 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.07 1.00 6.66 -2.39 -0.02 0.98 16 46 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 50 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 51 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 52 H 0.08 1.81 6.52 -2.38 -0.02 1.79 16 Total: -1.00 -81.46 404.46 0.97 -80.49 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: 0.34 Total: 21.82 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: 6.39 Total: 10.95 kcal Atomic # 7 Polarization: -102.72 SS G_CDS: -4.66 Total: -107.37 kcal Atomic # 8 Polarization: -51.04 SS G_CDS: -3.12 Total: -54.17 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.27 kcal Total: -81.46 0.97 -80.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886907488.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.092 kcal (2) G-P(sol) polarization free energy of solvation -81.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds