Wall clock time and date at job start Tue Mar 31 2020 04:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.46595 * 2 1 4 4 C 1.46496 * 120.00260 * 269.99636 * 3 2 1 5 5 C 1.50702 * 109.47463 * 270.00558 * 4 3 2 6 6 H 1.08004 * 119.99891 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00039 * 179.97438 * 5 4 3 8 8 N 1.31504 * 120.00336 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99859 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47166 * 89.99987 * 9 7 5 11 11 H 1.48499 * 109.47271 * 210.00069 * 9 7 5 12 12 H 1.48499 * 109.46886 * 329.99796 * 9 7 5 13 13 C 1.34777 * 120.00169 * 90.00471 * 3 2 1 14 14 O 1.21274 * 120.00434 * 179.97438 * 13 3 2 15 15 C 1.50705 * 119.99593 * 359.97438 * 13 3 2 16 16 N 1.46903 * 109.46848 * 180.02562 * 15 13 3 17 17 C 1.46899 * 110.99807 * 180.02562 * 16 15 13 18 18 H 1.09001 * 109.47354 * 35.00059 * 17 16 15 19 19 C 1.53006 * 109.47163 * 275.00039 * 17 16 15 20 20 O 1.42902 * 109.46978 * 295.00086 * 19 17 16 21 21 C 1.42893 * 114.00165 * 180.02562 * 20 19 17 22 22 C 1.52997 * 109.47254 * 154.99927 * 17 16 15 23 23 H 1.09004 * 109.52124 * 60.12522 * 22 17 16 24 24 C 1.53178 * 109.52250 * 300.00149 * 22 17 16 25 25 C 1.53179 * 109.03588 * 183.11615 * 24 22 17 26 26 C 1.53090 * 109.16503 * 56.97543 * 25 24 22 27 27 O 1.42904 * 109.41697 * 302.39107 * 26 25 24 28 28 C 1.42901 * 114.09496 * 61.16086 * 27 26 25 29 29 H 1.08993 * 109.47330 * 299.99916 * 1 2 3 30 30 H 1.09006 * 109.46905 * 59.99899 * 1 2 3 31 31 H 1.08999 * 109.46950 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47055 * 240.00356 * 2 1 3 33 33 H 1.08993 * 109.47067 * 119.99894 * 2 1 3 34 34 H 1.09005 * 109.47270 * 30.00236 * 4 3 2 35 35 H 1.09003 * 109.47498 * 150.00506 * 4 3 2 36 36 H 0.97001 * 120.00450 * 180.02562 * 8 7 5 37 37 H 1.09001 * 109.47225 * 60.00416 * 15 13 3 38 38 H 1.08998 * 109.47374 * 300.00310 * 15 13 3 39 39 H 1.00902 * 111.00051 * 56.04740 * 16 15 13 40 40 H 1.08995 * 109.46794 * 55.00104 * 19 17 16 41 41 H 1.09000 * 109.47314 * 175.00238 * 19 17 16 42 42 H 1.09000 * 109.47250 * 179.97438 * 21 20 19 43 43 H 1.09001 * 109.47254 * 300.00130 * 21 20 19 44 44 H 1.09002 * 109.47420 * 59.99904 * 21 20 19 45 45 H 1.09003 * 109.53881 * 302.97618 * 24 22 17 46 46 H 1.08991 * 109.54830 * 63.15440 * 24 22 17 47 47 H 1.08997 * 109.52167 * 176.88685 * 25 24 22 48 48 H 1.09000 * 109.51973 * 297.07126 * 25 24 22 49 49 H 1.08993 * 109.47934 * 62.37700 * 26 25 24 50 50 H 1.09010 * 109.47772 * 182.39807 * 26 25 24 51 51 H 1.08996 * 109.47955 * 178.86020 * 28 27 26 52 52 H 1.09000 * 109.48276 * 58.82170 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8352 -1.7037 6 1 4.3429 1.2310 -1.0957 7 6 4.1490 2.3899 -2.8779 8 7 3.3491 3.1259 -3.6180 9 14 5.9131 2.0958 -3.4175 10 1 5.9759 0.8747 -4.2602 11 1 6.3922 3.2629 -4.2008 12 1 6.7734 1.9161 -2.2206 13 6 2.2429 2.0166 1.1672 14 8 2.6475 3.1599 1.1672 15 6 1.9913 1.3063 2.4723 16 7 2.3091 2.2065 3.5889 17 6 2.0758 1.5461 4.8802 18 1 2.3276 0.4888 4.7983 19 6 0.6030 1.6911 5.2685 20 8 0.3022 3.0705 5.4894 21 6 -1.0557 3.3172 5.8599 22 6 2.9522 2.1976 5.9518 23 1 2.6996 3.2546 6.0360 24 6 4.4271 2.0531 5.5642 25 6 5.2968 2.6391 6.6808 26 6 4.9698 1.9295 7.9973 27 8 3.5774 2.0765 8.2831 28 6 2.7158 1.5051 7.2966 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.5817 1.6878 -2.0284 35 1 2.0954 3.1412 -1.1384 36 1 3.6749 3.5158 -4.4443 37 1 2.6213 0.4187 2.5302 38 1 0.9433 1.0124 2.5299 39 1 1.7839 3.0655 3.5215 40 1 -0.0243 1.3067 4.4642 41 1 0.4105 1.1266 6.1808 42 1 -1.2028 4.3868 6.0098 43 1 -1.7178 2.9664 5.0682 44 1 -1.2822 2.7865 6.7846 45 1 4.6673 0.9983 5.4305 46 1 4.6142 2.5903 4.6345 47 1 6.3491 2.4908 6.4386 48 1 5.0918 3.7049 6.7807 49 1 5.2131 0.8707 7.9097 50 1 5.5552 2.3716 8.8036 51 1 1.6773 1.6415 7.5980 52 1 2.9297 0.4406 7.1998 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886907489.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:45 Heat of formation + Delta-G solvation = -133.646839 kcal Electronic energy + Delta-G solvation = -29801.132551 eV Core-core repulsion = 25800.601071 eV Total energy + Delta-G solvation = -4000.531480 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.98945 -39.01979 -38.16956 -36.03306 -35.18214 -33.37406 -32.75795 -31.84062 -30.09059 -28.95555 -27.64234 -26.37588 -25.67188 -24.64705 -23.91437 -23.00898 -22.19539 -20.96221 -20.17445 -18.33402 -16.87126 -16.80036 -16.50009 -16.25388 -16.07322 -15.95160 -15.63585 -15.43884 -14.83976 -14.72050 -14.51242 -14.27045 -13.85738 -13.71427 -13.38937 -13.26802 -13.07717 -12.65707 -12.64625 -12.50668 -12.04643 -11.98588 -11.86325 -11.73572 -11.65624 -11.56280 -11.19868 -11.17252 -10.94341 -10.89221 -10.73559 -10.56011 -10.49406 -10.35610 -10.09939 -9.87975 -9.60067 -9.51163 -8.85428 -8.40919 -8.25563 -7.62041 -6.01527 -4.05916 3.31877 3.38668 3.41979 3.47053 3.49533 3.71143 3.82993 4.34755 4.48434 4.53149 4.68022 4.85333 4.89191 4.96811 5.01985 5.06378 5.10944 5.13872 5.14416 5.17846 5.25729 5.29952 5.33259 5.37113 5.38435 5.46954 5.50215 5.55880 5.59923 5.64927 5.70930 5.77461 5.86257 5.97270 6.00109 6.05925 6.21644 6.39272 6.45243 6.46033 6.82870 6.96497 7.06147 7.17927 7.47495 7.51879 7.59408 7.95416 8.27011 8.47111 8.94274 9.16323 9.59259 11.06547 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.012581 B = 0.003113 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.995355 B = 8993.599178 C =10390.746389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.107 3.893 3 N -0.600 5.600 4 C 0.248 3.752 5 C -0.524 4.524 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.504 3.496 14 O -0.526 6.526 15 C 0.040 3.960 16 N -0.659 5.659 17 C 0.100 3.900 18 H 0.089 0.911 19 C 0.024 3.976 20 O -0.380 6.380 21 C 0.032 3.968 22 C -0.104 4.104 23 H 0.090 0.910 24 C -0.110 4.110 25 C -0.157 4.157 26 C 0.060 3.940 27 O -0.383 6.383 28 C 0.067 3.933 29 H 0.047 0.953 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.030 0.970 35 H 0.042 0.958 36 H 0.263 0.737 37 H 0.093 0.907 38 H 0.049 0.951 39 H 0.361 0.639 40 H 0.049 0.951 41 H 0.053 0.947 42 H 0.087 0.913 43 H 0.039 0.961 44 H 0.039 0.961 45 H 0.055 0.945 46 H 0.088 0.912 47 H 0.071 0.929 48 H 0.070 0.930 49 H 0.047 0.953 50 H 0.089 0.911 51 H 0.089 0.911 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.539 -7.786 21.646 23.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.333 5.333 4 C 0.129 3.871 5 C -0.563 4.563 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.290 3.710 14 O -0.402 6.402 15 C -0.092 4.092 16 N -0.292 5.292 17 C -0.011 4.011 18 H 0.107 0.893 19 C -0.054 4.054 20 O -0.298 6.298 21 C -0.065 4.065 22 C -0.123 4.123 23 H 0.109 0.891 24 C -0.147 4.147 25 C -0.195 4.195 26 C -0.017 4.017 27 O -0.302 6.302 28 C -0.010 4.010 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.048 0.952 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.111 0.889 38 H 0.066 0.934 39 H 0.182 0.818 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.105 0.895 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.074 0.926 46 H 0.106 0.894 47 H 0.089 0.911 48 H 0.089 0.911 49 H 0.065 0.935 50 H 0.107 0.893 51 H 0.107 0.893 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.581 -6.949 21.567 23.336 hybrid contribution -0.269 -0.664 -0.700 1.001 sum -5.850 -7.612 20.868 22.970 Atomic orbital electron populations 1.22223 0.96997 1.01276 1.02190 1.21383 0.93318 0.84441 1.02569 1.48251 1.64139 1.13166 1.07738 1.19235 0.96190 0.93594 0.78105 1.21446 0.96957 1.31776 1.06127 0.92481 1.24932 0.97818 0.94936 0.96447 1.69928 1.35704 1.33543 1.14319 0.86506 0.84785 0.77615 0.78578 1.20714 1.21109 1.19859 1.20161 0.78891 0.87130 0.84820 1.90681 1.44679 1.17939 1.86883 1.21953 0.99616 0.96765 0.90868 1.60105 1.62859 1.07194 0.99036 1.21661 0.90517 0.98749 0.90170 0.89317 1.23388 0.98445 0.83709 0.99864 1.87914 1.27687 1.24468 1.89765 1.22744 0.83059 1.02210 0.98447 1.21633 0.95575 1.02101 0.93025 0.89131 1.21526 0.93064 1.00989 0.99125 1.22213 1.00416 1.01247 0.95608 1.22592 0.82380 0.99281 0.97451 1.87922 1.16183 1.80096 1.45952 1.22639 0.94314 0.95795 0.88259 0.93345 0.92017 0.92256 0.89973 0.91928 0.95176 0.93979 0.92771 0.88890 0.93357 0.81798 0.93301 0.92852 0.89485 0.94200 0.94240 0.92618 0.89377 0.91072 0.91091 0.93480 0.89294 0.89277 0.93618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 10.24 37.16 0.38 -1.81 16 2 C 0.11 1.67 5.93 -4.04 -0.02 1.65 16 3 N -0.60 -12.52 2.46 -175.06 -0.43 -12.95 16 4 C 0.25 6.49 5.16 -5.19 -0.03 6.47 16 5 C -0.52 -14.97 9.39 -34.44 -0.32 -15.30 16 6 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 9 Si 0.90 22.09 29.54 -169.99 -5.02 17.06 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 13 C 0.50 10.40 7.71 -10.98 -0.08 10.32 16 14 O -0.53 -13.36 15.78 5.56 0.09 -13.27 16 15 C 0.04 0.59 4.52 -4.97 -0.02 0.57 16 16 N -0.66 -9.38 5.18 -107.99 -0.56 -9.93 16 17 C 0.10 1.06 2.00 -67.71 -0.14 0.93 16 18 H 0.09 0.83 7.80 -51.93 -0.40 0.42 16 19 C 0.02 0.23 5.11 37.16 0.19 0.42 16 20 O -0.38 -4.22 9.19 -35.23 -0.32 -4.55 16 21 C 0.03 0.27 11.01 101.05 1.11 1.38 16 22 C -0.10 -1.14 1.96 -90.48 -0.18 -1.32 16 23 H 0.09 1.19 7.56 -51.93 -0.39 0.80 16 24 C -0.11 -1.26 5.11 -26.55 -0.14 -1.39 16 25 C -0.16 -1.60 6.14 -26.59 -0.16 -1.76 16 26 C 0.06 0.56 6.84 37.20 0.25 0.82 16 27 O -0.38 -4.36 10.77 -35.23 -0.38 -4.74 16 28 C 0.07 0.65 5.71 37.21 0.21 0.87 16 29 H 0.05 0.59 7.22 -51.93 -0.37 0.22 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 33 H 0.06 0.80 6.44 -51.93 -0.33 0.47 16 34 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 35 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.09 1.22 7.31 -51.93 -0.38 0.84 16 38 H 0.05 0.60 6.40 -51.93 -0.33 0.27 16 39 H 0.36 5.76 7.64 -39.29 -0.30 5.46 16 40 H 0.05 0.45 7.35 -51.93 -0.38 0.07 16 41 H 0.05 0.41 6.78 -51.93 -0.35 0.06 16 42 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.09 1.25 7.71 -51.93 -0.40 0.84 16 47 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 49 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.09 0.71 8.14 -51.92 -0.42 0.29 16 51 H 0.09 0.81 6.70 -51.93 -0.35 0.46 16 52 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 407.95 15.07 6.15 6.15 Total: -1.00 -33.82 407.95 -8.20 -42.02 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -9.42 Total: 2.84 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: 0.96 Total: 3.48 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: -0.25 Total: -48.99 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.62 Total: -22.56 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.82 -8.20 -42.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886907489.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.630 kcal (2) G-P(sol) polarization free energy of solvation -33.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds