Wall clock time and date at job start Tue Mar 31 2020 04:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42909 * 113.99701 * 2 1 4 4 C 1.52998 * 109.46774 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.46978 * 184.99738 * 4 3 2 6 6 N 1.46904 * 109.46849 * 65.00539 * 4 3 2 7 7 C 1.46902 * 111.00360 * 84.99511 * 6 4 3 8 8 C 1.52992 * 109.46956 * 179.97438 * 7 6 4 9 9 C 1.50708 * 109.46955 * 180.02562 * 8 7 6 10 10 O 1.21281 * 119.99944 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00400 * 180.02562 * 9 8 7 12 12 C 1.46512 * 119.99637 * 359.97438 * 11 9 8 13 13 C 1.46491 * 120.00401 * 179.97438 * 11 9 8 14 14 C 1.50702 * 109.46957 * 89.99834 * 13 11 9 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 11 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 13 11 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48504 * 109.47196 * 60.00645 * 18 16 14 20 20 H 1.48504 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47679 * 300.00280 * 18 16 14 22 22 C 1.52995 * 109.47523 * 305.00562 * 4 3 2 23 23 H 1.08990 * 109.52503 * 59.87227 * 22 4 3 24 24 C 1.53187 * 109.52247 * 180.02562 * 22 4 3 25 25 C 1.53174 * 109.03440 * 176.88411 * 24 22 4 26 26 C 1.53092 * 109.16238 * 303.01207 * 25 24 22 27 27 O 1.42901 * 109.41405 * 57.61458 * 26 25 24 28 28 C 1.42902 * 114.09656 * 298.83982 * 27 26 25 29 29 H 1.09001 * 109.47509 * 299.99682 * 1 2 3 30 30 H 1.09004 * 109.47328 * 59.99991 * 1 2 3 31 31 H 1.09003 * 109.47419 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46768 * 60.00054 * 3 2 1 33 33 H 1.08991 * 109.47354 * 299.99972 * 3 2 1 34 34 H 1.00903 * 110.99891 * 321.03992 * 6 4 3 35 35 H 1.08999 * 109.46877 * 60.00005 * 7 6 4 36 36 H 1.08998 * 109.46846 * 300.00430 * 7 6 4 37 37 H 1.08999 * 109.47242 * 60.00328 * 8 7 6 38 38 H 1.08998 * 109.47776 * 299.99961 * 8 7 6 39 39 H 1.08995 * 109.46885 * 270.00009 * 12 11 9 40 40 H 1.09002 * 109.46695 * 30.00158 * 12 11 9 41 41 H 1.09003 * 109.46868 * 149.99786 * 12 11 9 42 42 H 1.09004 * 109.47166 * 330.00100 * 13 11 9 43 43 H 1.08994 * 109.47507 * 209.99806 * 13 11 9 44 44 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 45 45 H 1.09006 * 109.53452 * 296.74378 * 24 22 4 46 46 H 1.08994 * 109.54818 * 57.01157 * 24 22 4 47 47 H 1.09000 * 109.52402 * 62.91914 * 25 24 22 48 48 H 1.09002 * 109.51842 * 183.04606 * 25 24 22 49 49 H 1.09005 * 109.47562 * 177.59526 * 26 25 24 50 50 H 1.08995 * 109.48465 * 297.61656 * 26 25 24 51 51 H 1.08998 * 109.48202 * 301.17529 * 28 27 26 52 52 H 1.08997 * 109.48176 * 181.14101 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5353 1.1847 0.0006 5 1 3.9783 2.1767 0.0902 6 7 3.9777 0.5625 -1.2544 7 6 4.1205 1.5658 -2.3179 8 6 4.5822 0.8814 -3.6060 9 6 4.7293 1.9108 -4.6968 10 8 4.4881 3.0769 -4.4667 11 7 5.1278 1.5355 -5.9283 12 6 5.4186 0.1267 -6.2065 13 6 5.2703 2.5360 -6.9888 14 6 6.6739 3.0846 -6.9766 15 1 7.3885 2.7236 -6.2517 16 6 7.0476 4.0427 -7.8950 17 7 6.1776 4.4820 -8.7780 18 14 8.7896 4.7170 -7.8847 19 1 9.7510 3.6082 -8.1119 20 1 8.9354 5.7278 -8.9629 21 1 9.0672 5.3516 -6.5711 22 6 3.9780 0.3198 1.1825 23 1 3.5337 -0.6716 1.0949 24 6 5.5051 0.1987 1.1845 25 6 5.9409 -0.6033 2.4146 26 6 5.4110 0.0837 3.6760 27 8 3.9884 0.1921 3.5958 28 6 3.5240 0.9711 2.4914 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8465 -0.8899 34 1 3.3476 -0.1742 -1.5345 35 1 4.8579 2.3105 -2.0181 36 1 3.1607 2.0532 -2.4887 37 1 3.8451 0.1365 -3.9059 38 1 5.5421 0.3943 -3.4348 39 1 6.4705 -0.0740 -6.0037 40 1 4.7988 -0.5047 -5.5699 41 1 5.2027 -0.0891 -7.2529 42 1 4.5618 3.3471 -6.8207 43 1 5.0697 2.0728 -7.9548 44 1 6.4404 5.1563 -9.4239 45 1 5.8312 -0.3150 0.2800 46 1 5.9498 1.1931 1.2211 47 1 5.5365 -1.6136 2.3529 48 1 7.0293 -0.6483 2.4531 49 1 5.6819 -0.5058 4.5519 50 1 5.8475 1.0790 3.7585 51 1 3.9356 1.9782 2.5583 52 1 2.4354 1.0210 2.5141 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886914510.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:45 Heat of formation + Delta-G solvation = -138.921371 kcal Electronic energy + Delta-G solvation = -29047.933353 eV Core-core repulsion = 25047.173152 eV Total energy + Delta-G solvation = -4000.760201 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.03796 -39.01845 -38.31602 -36.35611 -34.81367 -33.80875 -32.67227 -32.32969 -30.12918 -28.45565 -27.50782 -26.29719 -25.73391 -24.94587 -24.37998 -23.27292 -21.73406 -21.08833 -20.17614 -18.31193 -16.94111 -16.75541 -16.57108 -16.20619 -16.18910 -16.07833 -15.73966 -15.35488 -15.14123 -14.93826 -14.76070 -14.17701 -14.11292 -13.80727 -13.57137 -13.32302 -12.94289 -12.73995 -12.54649 -12.24962 -12.10228 -12.04246 -11.99606 -11.82459 -11.73923 -11.49418 -11.31606 -11.21818 -11.03456 -10.97950 -10.87580 -10.62087 -10.53447 -10.44447 -10.14685 -9.94279 -9.63920 -9.60593 -8.88892 -8.45172 -8.42643 -7.62908 -6.03690 -4.08259 3.32305 3.36384 3.37911 3.40379 3.47244 3.63663 3.83568 4.27192 4.43614 4.47094 4.60035 4.76570 4.79821 4.90266 4.92935 4.99164 5.06397 5.08760 5.12477 5.17851 5.19706 5.28305 5.29553 5.33104 5.35996 5.40451 5.42612 5.50299 5.58205 5.63562 5.74843 5.82479 5.86498 5.89787 5.98856 6.10334 6.14287 6.21959 6.24240 6.28434 6.76937 6.93065 7.02630 7.06063 7.35344 7.44152 7.55596 7.92617 8.24383 8.43229 8.90827 9.10999 9.56642 11.04412 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.015010 B = 0.002417 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.923365 B =11582.648431 C =12617.103215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.024 3.976 4 C 0.100 3.900 5 H 0.091 0.909 6 N -0.679 5.679 7 C 0.075 3.925 8 C -0.136 4.136 9 C 0.505 3.495 10 O -0.546 6.546 11 N -0.604 5.604 12 C 0.086 3.914 13 C 0.245 3.755 14 C -0.525 4.525 15 H 0.056 0.944 16 C 0.060 3.940 17 N -0.896 5.896 18 Si 0.899 3.101 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.276 1.276 22 C -0.104 4.104 23 H 0.089 0.911 24 C -0.109 4.109 25 C -0.157 4.157 26 C 0.059 3.941 27 O -0.383 6.383 28 C 0.065 3.935 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.086 0.914 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.348 0.652 35 H 0.080 0.920 36 H 0.036 0.964 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.050 0.950 40 H 0.056 0.944 41 H 0.066 0.934 42 H 0.043 0.957 43 H 0.031 0.969 44 H 0.264 0.736 45 H 0.083 0.917 46 H 0.057 0.943 47 H 0.069 0.931 48 H 0.070 0.930 49 H 0.089 0.911 50 H 0.048 0.952 51 H 0.047 0.953 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.583 -12.416 21.619 26.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C -0.054 4.054 4 C -0.011 4.011 5 H 0.109 0.891 6 N -0.310 5.310 7 C -0.055 4.055 8 C -0.176 4.176 9 C 0.291 3.709 10 O -0.425 6.425 11 N -0.336 5.336 12 C -0.058 4.058 13 C 0.126 3.874 14 C -0.564 4.564 15 H 0.075 0.925 16 C -0.142 4.142 17 N -0.535 5.535 18 Si 0.726 3.274 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.123 4.123 23 H 0.107 0.893 24 C -0.146 4.146 25 C -0.195 4.195 26 C -0.018 4.018 27 O -0.301 6.301 28 C -0.012 4.012 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.104 0.896 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.167 0.833 35 H 0.098 0.902 36 H 0.054 0.946 37 H 0.101 0.899 38 H 0.113 0.887 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.061 0.939 43 H 0.049 0.951 44 H 0.073 0.927 45 H 0.102 0.898 46 H 0.076 0.924 47 H 0.088 0.912 48 H 0.089 0.911 49 H 0.107 0.893 50 H 0.066 0.934 51 H 0.065 0.935 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.066 -11.906 21.837 25.856 hybrid contribution 0.037 0.920 -0.669 1.138 sum -7.029 -10.986 21.169 24.864 Atomic orbital electron populations 1.22744 0.81043 1.02772 0.99948 1.87857 1.19611 1.27355 1.95360 1.23374 0.95975 0.85292 1.00753 1.21613 0.89968 0.98566 0.90906 0.89097 1.60464 1.54474 1.13138 1.02934 1.21703 1.00617 0.93616 0.89520 1.21595 1.03633 0.98462 0.93939 1.20284 0.77923 0.89305 0.83385 1.90660 1.51109 1.19420 1.81282 1.48160 1.65089 1.08665 1.11669 1.21624 1.00249 0.82444 1.01505 1.19287 0.97539 0.86724 0.83880 1.21398 0.96696 1.22390 1.15937 0.92548 1.24944 0.97734 0.96187 0.95314 1.69926 1.34464 1.30261 1.18871 0.86552 0.84399 0.78713 0.77715 1.20236 1.21178 1.20174 1.21638 0.96715 1.00963 0.92974 0.89304 1.21524 0.94518 1.00307 0.98281 1.22216 1.01096 1.00470 0.95690 1.22590 0.81378 0.99764 0.98080 1.87927 1.21442 1.73117 1.47661 1.22657 0.99460 0.93414 0.85664 0.94177 0.94098 0.89561 0.92829 0.92909 0.83340 0.90171 0.94602 0.89904 0.88695 0.93189 0.92503 0.91514 0.93941 0.95079 0.92683 0.89796 0.92401 0.91199 0.91085 0.89258 0.93377 0.93469 0.89198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.38 -3.66 9.19 -35.23 -0.32 -3.99 16 3 C 0.02 0.22 5.11 37.16 0.19 0.41 16 4 C 0.10 0.97 2.00 -67.71 -0.14 0.83 16 5 H 0.09 0.90 7.80 -51.93 -0.40 0.50 16 6 N -0.68 -7.34 5.55 -106.73 -0.59 -7.94 16 7 C 0.07 1.01 4.77 -3.83 -0.02 0.99 16 8 C -0.14 -1.95 4.51 -27.88 -0.13 -2.08 16 9 C 0.50 10.39 7.67 -10.98 -0.08 10.30 16 10 O -0.55 -13.64 15.56 5.56 0.09 -13.55 16 11 N -0.60 -12.87 2.86 -182.95 -0.52 -13.39 16 12 C 0.09 1.36 10.29 59.85 0.62 1.98 16 13 C 0.24 6.49 5.20 -5.20 -0.03 6.46 16 14 C -0.53 -15.10 9.39 -34.44 -0.32 -15.42 16 15 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 16 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 17 N -0.90 -26.86 13.29 55.43 0.74 -26.13 16 18 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 22 C -0.10 -0.96 1.96 -90.48 -0.18 -1.14 16 23 H 0.09 0.96 7.56 -51.93 -0.39 0.57 16 24 C -0.11 -1.02 5.10 -26.54 -0.14 -1.15 16 25 C -0.16 -1.30 6.14 -26.59 -0.16 -1.46 16 26 C 0.06 0.49 6.84 37.20 0.25 0.74 16 27 O -0.38 -4.02 10.77 -35.23 -0.38 -4.40 16 28 C 0.07 0.59 5.71 37.21 0.21 0.80 16 29 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.42 6.77 -51.93 -0.35 0.07 16 33 H 0.05 0.52 7.35 -51.93 -0.38 0.14 16 34 H 0.35 3.69 7.94 -39.29 -0.31 3.38 16 35 H 0.08 1.22 8.01 -51.93 -0.42 0.80 16 36 H 0.04 0.52 7.32 -51.93 -0.38 0.14 16 37 H 0.08 1.01 7.40 -51.93 -0.38 0.62 16 38 H 0.09 1.28 8.11 -51.93 -0.42 0.86 16 39 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.69 6.44 -51.93 -0.33 0.36 16 41 H 0.07 1.02 7.89 -51.93 -0.41 0.61 16 42 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 43 H 0.03 0.83 7.89 -51.93 -0.41 0.42 16 44 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 45 H 0.08 0.87 7.72 -51.93 -0.40 0.47 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 51 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 52 H 0.09 0.77 6.70 -51.93 -0.35 0.42 16 LS Contribution 409.10 15.07 6.17 6.17 Total: -1.00 -33.52 409.10 -8.26 -41.78 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -9.51 Total: 0.18 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: 1.10 Total: 4.25 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: -0.38 Total: -47.46 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -0.62 Total: -21.94 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.52 -8.26 -41.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886914510.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.138 kcal (2) G-P(sol) polarization free energy of solvation -33.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds