Wall clock time and date at job start Tue Mar 31 2020 04:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42899 * 114.00067 * 2 1 4 4 C 1.52997 * 109.47423 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47647 * 184.67859 * 4 3 2 6 6 N 1.46899 * 109.47089 * 64.67656 * 4 3 2 7 7 C 1.46903 * 110.99943 * 85.00042 * 6 4 3 8 8 C 1.53001 * 109.47107 * 180.02562 * 7 6 4 9 9 C 1.50704 * 109.46972 * 180.02562 * 8 7 6 10 10 O 1.21278 * 119.99804 * 359.97438 * 9 8 7 11 11 N 1.34772 * 119.99915 * 179.97438 * 9 8 7 12 12 C 1.46502 * 120.00276 * 359.97438 * 11 9 8 13 13 C 1.46498 * 120.00335 * 179.97438 * 11 9 8 14 14 C 1.50695 * 109.47158 * 89.99692 * 13 11 9 15 15 H 1.08004 * 119.99960 * 0.02562 * 14 13 11 16 16 C 1.37881 * 120.00194 * 180.02562 * 14 13 11 17 17 N 1.31517 * 120.00251 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 119.99951 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47297 * 89.99501 * 18 16 14 20 20 H 1.48494 * 109.47348 * 209.99542 * 18 16 14 21 21 H 1.48498 * 109.47299 * 329.99870 * 18 16 14 22 22 C 1.53003 * 109.47149 * 304.67752 * 4 3 2 23 23 H 1.09007 * 109.51722 * 65.09261 * 22 4 3 24 24 C 1.53172 * 109.52147 * 304.96586 * 22 4 3 25 25 C 1.53181 * 109.03342 * 183.11112 * 24 22 4 26 26 C 1.53093 * 109.16479 * 56.98156 * 25 24 22 27 27 O 1.42911 * 109.41355 * 302.38994 * 26 25 24 28 28 C 1.42902 * 114.09604 * 61.15560 * 27 26 25 29 29 H 1.09003 * 109.47076 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47143 * 299.99608 * 1 2 3 31 31 H 1.08994 * 109.47535 * 59.99734 * 1 2 3 32 32 H 1.09006 * 109.47086 * 60.00167 * 3 2 1 33 33 H 1.09003 * 109.47422 * 300.00307 * 3 2 1 34 34 H 1.00897 * 111.00536 * 208.95282 * 6 4 3 35 35 H 1.09003 * 109.46999 * 60.00215 * 7 6 4 36 36 H 1.08999 * 109.46987 * 300.00114 * 7 6 4 37 37 H 1.08999 * 109.47217 * 299.99884 * 8 7 6 38 38 H 1.08990 * 109.47259 * 59.99919 * 8 7 6 39 39 H 1.09004 * 109.47267 * 89.99479 * 12 11 9 40 40 H 1.09000 * 109.47191 * 210.00218 * 12 11 9 41 41 H 1.09001 * 109.47011 * 330.00035 * 12 11 9 42 42 H 1.09000 * 109.47549 * 210.00033 * 13 11 9 43 43 H 1.09003 * 109.46880 * 330.00053 * 13 11 9 44 44 H 0.96997 * 119.99909 * 179.97438 * 17 16 14 45 45 H 1.08996 * 109.54340 * 302.97927 * 24 22 4 46 46 H 1.09002 * 109.54769 * 63.15752 * 24 22 4 47 47 H 1.09002 * 109.52280 * 176.88587 * 25 24 22 48 48 H 1.09001 * 109.52646 * 297.07350 * 25 24 22 49 49 H 1.09000 * 109.48286 * 62.36905 * 26 25 24 50 50 H 1.08994 * 109.48206 * 182.39518 * 26 25 24 51 51 H 1.08995 * 109.47996 * 178.86047 * 28 27 26 52 52 H 1.09005 * 109.48259 * 58.82462 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9786 2.1770 0.0832 6 7 3.9762 0.5557 -1.2528 7 6 4.1178 1.5535 -2.3217 8 6 4.5767 0.8621 -3.6072 9 6 4.7224 1.8858 -4.7036 10 8 4.4824 3.0532 -4.4790 11 7 5.1195 1.5039 -5.9336 12 6 5.4100 0.0938 -6.2047 13 6 5.2607 2.4988 -6.9996 14 6 6.6642 3.0474 -6.9920 15 1 7.3797 2.6903 -6.2659 16 6 7.0351 4.0052 -7.9118 17 7 8.2598 4.4844 -7.9049 18 14 5.7975 4.6234 -9.1671 19 1 5.0717 5.7939 -8.6117 20 1 6.5087 5.0248 -10.4073 21 1 4.8281 3.5429 -9.4800 22 6 3.9795 0.3261 1.1853 23 1 3.6114 -0.6918 1.0561 24 6 3.4153 0.9137 2.4824 25 6 3.9298 0.0920 3.6684 26 6 5.4606 0.0876 3.6503 27 8 5.9194 -0.4422 2.4048 28 6 5.5084 0.3125 1.2630 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.6886 1.8464 0.8901 33 1 1.6885 1.8464 -0.8900 34 1 4.8364 0.0457 -1.1181 35 1 4.8555 2.2997 -2.0268 36 1 3.1577 2.0399 -2.4941 37 1 5.5366 0.3753 -3.4352 38 1 3.8387 0.1162 -3.9019 39 1 4.5018 -0.4060 -6.5417 40 1 6.1730 0.0225 -6.9798 41 1 5.7712 -0.3843 -5.2942 42 1 5.0589 2.0304 -7.9629 43 1 4.5524 3.3108 -6.8348 44 1 8.5208 5.1579 -8.5523 45 1 3.7420 1.9483 2.5864 46 1 2.3262 0.8762 2.4563 47 1 3.5779 0.5364 4.5994 48 1 3.5616 -0.9309 3.5900 49 1 5.8286 1.1066 3.7693 50 1 5.8321 -0.5308 4.4673 51 1 5.9142 -0.1440 0.3602 52 1 5.8769 1.3346 1.3509 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886914511.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:47 Heat of formation + Delta-G solvation = -130.687281 kcal Electronic energy + Delta-G solvation = -29073.670336 eV Core-core repulsion = 25073.267192 eV Total energy + Delta-G solvation = -4000.403144 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.14599 -39.11446 -38.14990 -36.39954 -34.93107 -34.07587 -32.62724 -32.20555 -30.10242 -28.89456 -27.96182 -26.21269 -25.89532 -25.31644 -24.02555 -23.19765 -21.59519 -21.07546 -20.15111 -18.36380 -17.05807 -16.94429 -16.83542 -16.49161 -16.17228 -15.89507 -15.57460 -15.39099 -15.20383 -14.92697 -14.73979 -14.43370 -14.28733 -13.88019 -13.56679 -13.14980 -13.05080 -12.98424 -12.63936 -12.36424 -12.32419 -12.14742 -11.98536 -11.90128 -11.71485 -11.53242 -11.46022 -11.29453 -11.19967 -11.02615 -10.83884 -10.77770 -10.50507 -10.46964 -10.14120 -9.75598 -9.67471 -9.54461 -9.00007 -8.59058 -8.49025 -7.68780 -6.08940 -4.07551 3.29036 3.35018 3.36718 3.37331 3.55291 3.59924 3.74615 4.15536 4.36672 4.39539 4.46032 4.53809 4.60767 4.81739 4.97665 5.00890 5.07764 5.11084 5.16983 5.19016 5.20312 5.24092 5.25807 5.28410 5.32173 5.38172 5.42801 5.47815 5.50714 5.58198 5.61933 5.65235 5.74233 5.81915 5.86200 5.87614 6.03407 6.09727 6.15356 6.19661 6.70774 6.87097 6.89609 6.95001 7.11121 7.27477 7.34943 7.61318 8.26489 8.47172 8.92772 8.99838 9.51515 11.04521 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.016643 B = 0.002388 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.966445 B =11722.783026 C =12568.895795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.369 6.369 3 C 0.073 3.927 4 C 0.098 3.902 5 H 0.060 0.940 6 N -0.679 5.679 7 C 0.074 3.926 8 C -0.135 4.135 9 C 0.508 3.492 10 O -0.546 6.546 11 N -0.599 5.599 12 C 0.084 3.916 13 C 0.215 3.785 14 C -0.528 4.528 15 H 0.074 0.926 16 C 0.071 3.929 17 N -0.898 5.898 18 Si 0.877 3.123 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.266 1.266 22 C -0.118 4.118 23 H 0.099 0.901 24 C -0.116 4.116 25 C -0.154 4.154 26 C 0.058 3.942 27 O -0.379 6.379 28 C 0.060 3.940 29 H 0.083 0.917 30 H 0.034 0.966 31 H 0.039 0.961 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.340 0.660 35 H 0.040 0.960 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.045 0.955 40 H 0.075 0.925 41 H 0.061 0.939 42 H 0.029 0.971 43 H 0.036 0.964 44 H 0.264 0.736 45 H 0.061 0.939 46 H 0.072 0.928 47 H 0.071 0.929 48 H 0.072 0.928 49 H 0.049 0.951 50 H 0.092 0.908 51 H 0.094 0.906 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.417 -11.757 21.742 27.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.288 6.288 3 C -0.005 4.005 4 C -0.012 4.012 5 H 0.078 0.922 6 N -0.311 5.311 7 C -0.055 4.055 8 C -0.176 4.176 9 C 0.294 3.706 10 O -0.424 6.424 11 N -0.331 5.331 12 C -0.060 4.060 13 C 0.094 3.906 14 C -0.566 4.566 15 H 0.092 0.908 16 C -0.131 4.131 17 N -0.537 5.537 18 Si 0.704 3.296 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.191 1.191 22 C -0.137 4.137 23 H 0.117 0.883 24 C -0.153 4.153 25 C -0.192 4.192 26 C -0.019 4.019 27 O -0.297 6.297 28 C -0.017 4.017 29 H 0.101 0.899 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.160 0.840 35 H 0.058 0.942 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.113 0.887 39 H 0.064 0.936 40 H 0.093 0.907 41 H 0.080 0.920 42 H 0.047 0.953 43 H 0.054 0.946 44 H 0.074 0.926 45 H 0.080 0.920 46 H 0.090 0.910 47 H 0.090 0.910 48 H 0.091 0.909 49 H 0.067 0.933 50 H 0.110 0.890 51 H 0.112 0.888 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -12.819 -11.524 21.526 27.577 hybrid contribution -0.037 1.339 -0.545 1.446 sum -12.856 -10.185 20.981 26.631 Atomic orbital electron populations 1.22704 0.81980 1.02426 0.99535 1.87963 1.18533 1.27075 1.95199 1.22556 0.93057 0.85178 0.99690 1.21518 0.93937 0.96647 0.89139 0.92237 1.60466 1.37652 1.27554 1.05460 1.21733 1.01546 0.92590 0.89673 1.21582 1.03155 0.98714 0.94118 1.20321 0.77613 0.89283 0.83379 1.90659 1.51024 1.19222 1.81458 1.47840 1.65481 1.08507 1.11226 1.21669 1.00469 0.81992 1.01915 1.19655 0.98236 0.87780 0.84930 1.21331 0.95391 1.22625 1.17284 0.90834 1.24870 0.95200 0.95709 0.97324 1.69899 1.17771 1.29419 1.36597 0.86833 0.81665 0.79980 0.81108 1.19934 1.21062 1.19060 1.21856 0.95798 1.02116 0.93966 0.88274 1.21642 1.01154 0.98922 0.93629 1.22174 0.96656 1.01577 0.98771 1.22593 0.93608 0.98990 0.86666 1.87956 1.74742 1.52933 1.14107 1.22713 0.93673 0.96114 0.89174 0.89890 0.94737 0.94259 0.93345 0.93133 0.84034 0.94175 0.90396 0.89501 0.88664 0.93613 0.90659 0.92001 0.95265 0.94613 0.92569 0.92037 0.90960 0.90992 0.90877 0.93293 0.88986 0.88796 0.93226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.37 -3.97 9.88 -35.23 -0.35 -4.32 16 3 C 0.07 0.72 5.05 37.16 0.19 0.90 16 4 C 0.10 0.96 2.03 -67.71 -0.14 0.82 16 5 H 0.06 0.60 7.80 -51.93 -0.40 0.19 16 6 N -0.68 -7.52 6.25 -106.72 -0.67 -8.19 16 7 C 0.07 1.00 4.77 -3.82 -0.02 0.98 16 8 C -0.14 -1.93 4.51 -27.88 -0.13 -2.06 16 9 C 0.51 10.26 7.67 -10.99 -0.08 10.17 16 10 O -0.55 -13.32 15.56 5.56 0.09 -13.24 16 11 N -0.60 -12.41 2.86 -182.95 -0.52 -12.93 16 12 C 0.08 1.29 10.24 59.85 0.61 1.90 16 13 C 0.21 5.32 4.23 -5.20 -0.02 5.30 16 14 C -0.53 -15.31 9.94 -34.44 -0.34 -15.65 16 15 H 0.07 2.34 8.06 -52.48 -0.42 1.91 16 16 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 17 N -0.90 -27.89 13.96 55.43 0.77 -27.12 16 18 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 16 19 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 22 C -0.12 -1.05 1.81 -90.48 -0.16 -1.22 16 23 H 0.10 1.05 7.74 -51.92 -0.40 0.65 16 24 C -0.12 -0.87 4.72 -26.55 -0.13 -1.00 16 25 C -0.15 -1.06 6.14 -26.59 -0.16 -1.23 16 26 C 0.06 0.45 6.84 37.21 0.25 0.70 16 27 O -0.38 -3.92 10.77 -35.23 -0.38 -4.30 16 28 C 0.06 0.55 5.91 37.20 0.22 0.77 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.40 6.71 -51.93 -0.35 0.05 16 33 H 0.05 0.55 7.36 -51.93 -0.38 0.17 16 34 H 0.34 3.42 6.53 -39.29 -0.26 3.16 16 35 H 0.04 0.60 8.01 -51.93 -0.42 0.18 16 36 H 0.08 1.15 7.32 -51.93 -0.38 0.77 16 37 H 0.09 1.10 7.40 -51.93 -0.38 0.72 16 38 H 0.10 1.22 8.11 -51.93 -0.42 0.80 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 41 H 0.06 0.79 6.44 -51.93 -0.33 0.45 16 42 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 43 H 0.04 0.95 6.85 -51.93 -0.36 0.59 16 44 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.07 0.55 6.66 -51.93 -0.35 0.20 16 47 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 49 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 50 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 51 H 0.09 0.83 6.53 -51.93 -0.34 0.49 16 52 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 404.29 15.07 6.09 6.09 Total: -1.00 -35.02 404.29 -7.90 -42.92 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -9.38 Total: 0.25 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: 1.11 Total: 3.76 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: -0.42 Total: -48.24 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.64 Total: -21.86 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.02 -7.90 -42.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886914511.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.769 kcal (2) G-P(sol) polarization free energy of solvation -35.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds