Wall clock time and date at job start Tue Mar 31 2020 04:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 114.00155 * 2 1 4 4 C 1.52994 * 109.47460 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47539 * 175.32411 * 4 3 2 6 6 N 1.46907 * 109.46892 * 295.32074 * 4 3 2 7 7 C 1.46893 * 111.00282 * 274.99971 * 6 4 3 8 8 C 1.52996 * 109.47347 * 180.02562 * 7 6 4 9 9 C 1.50701 * 109.47323 * 180.02562 * 8 7 6 10 10 O 1.21284 * 119.99948 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00109 * 179.97438 * 9 8 7 12 12 C 1.46502 * 120.00079 * 359.97438 * 11 9 8 13 13 C 1.46502 * 120.00104 * 180.02562 * 11 9 8 14 14 C 1.50703 * 109.47357 * 89.99538 * 13 11 9 15 15 H 1.08001 * 119.99689 * 0.02562 * 14 13 11 16 16 C 1.37878 * 119.99817 * 180.02562 * 14 13 11 17 17 N 1.31514 * 120.00138 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 119.99635 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47585 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47177 * 119.99858 * 18 16 14 21 21 H 1.48506 * 109.47224 * 239.99831 * 18 16 14 22 22 C 1.52999 * 109.47077 * 55.32010 * 4 3 2 23 23 H 1.09002 * 109.52349 * 304.00272 * 22 4 3 24 24 C 1.53172 * 109.52473 * 64.12809 * 22 4 3 25 25 C 1.53173 * 109.04105 * 176.88659 * 24 22 4 26 26 C 1.53097 * 109.16007 * 303.01657 * 25 24 22 27 27 O 1.42906 * 109.41209 * 57.61275 * 26 25 24 28 28 C 1.42913 * 114.15244 * 298.86772 * 27 26 25 29 29 H 1.09008 * 109.47005 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47551 * 300.00051 * 1 2 3 31 31 H 1.09000 * 109.47160 * 60.00808 * 1 2 3 32 32 H 1.08997 * 109.47291 * 59.99643 * 3 2 1 33 33 H 1.09006 * 109.46995 * 299.99970 * 3 2 1 34 34 H 1.00896 * 110.99866 * 38.95720 * 6 4 3 35 35 H 1.09010 * 109.47080 * 300.00250 * 7 6 4 36 36 H 1.09003 * 109.47141 * 59.99786 * 7 6 4 37 37 H 1.08999 * 109.46914 * 299.99543 * 8 7 6 38 38 H 1.08994 * 109.47300 * 59.99914 * 8 7 6 39 39 H 1.08995 * 109.46618 * 90.00030 * 12 11 9 40 40 H 1.09004 * 109.46920 * 210.00342 * 12 11 9 41 41 H 1.08996 * 109.46710 * 329.99986 * 12 11 9 42 42 H 1.08996 * 109.47174 * 209.99918 * 13 11 9 43 43 H 1.09001 * 109.46623 * 329.99758 * 13 11 9 44 44 H 0.96994 * 120.00050 * 180.02562 * 17 16 14 45 45 H 1.09000 * 109.54178 * 296.75913 * 24 22 4 46 46 H 1.09002 * 109.54062 * 57.01613 * 24 22 4 47 47 H 1.08995 * 109.52366 * 62.92404 * 25 24 22 48 48 H 1.08993 * 109.52582 * 183.05415 * 25 24 22 49 49 H 1.09000 * 109.48052 * 177.58764 * 26 25 24 50 50 H 1.08997 * 109.48319 * 297.61488 * 26 25 24 51 51 H 1.08997 * 109.42693 * 301.11584 * 28 27 26 52 52 H 1.09000 * 109.53823 * 181.08057 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9785 2.1770 -0.0831 6 7 3.9762 0.5557 1.2529 7 6 4.1178 1.5534 2.3218 8 6 4.5778 0.8623 3.6069 9 6 4.7224 1.8857 4.7036 10 8 4.4817 3.0530 4.4793 11 7 5.1192 1.5038 5.9337 12 6 5.4095 0.0936 6.2048 13 6 5.2592 2.4986 7.0000 14 6 3.9520 2.6313 7.7381 15 1 3.1021 2.0341 7.4426 16 6 3.8412 3.5153 8.7904 17 7 4.8761 4.2429 9.1497 18 14 2.2211 3.6793 9.7056 19 1 1.2205 2.7578 9.1100 20 1 2.4233 3.3338 11.1356 21 1 1.7313 5.0772 9.5985 22 6 3.9795 0.3260 -1.1852 23 1 3.4812 -0.6425 -1.1406 24 6 3.6113 1.0311 -2.4942 25 6 4.1294 0.2005 -3.6722 26 6 5.6405 0.0048 -3.5229 27 8 5.9161 -0.6279 -2.2715 28 6 5.4961 0.1240 -1.1311 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8463 -0.8900 34 1 3.3458 -0.1823 1.5283 35 1 4.8555 2.2997 2.0269 36 1 3.1577 2.0399 2.4941 37 1 3.8403 0.1158 3.9020 38 1 5.5379 0.3761 3.4343 39 1 6.4617 -0.1061 6.0024 40 1 5.1920 -0.1277 7.2498 41 1 4.7906 -0.5344 5.5641 42 1 6.0375 2.1806 7.6937 43 1 5.5306 3.4608 6.5657 44 1 4.7982 4.8645 9.8903 45 1 2.5278 1.1272 -2.5643 46 1 4.0684 2.0204 -2.5165 47 1 3.6351 -0.7709 -3.6783 48 1 3.9193 0.7219 -4.6060 49 1 6.0079 -0.6218 -4.3356 50 1 6.1378 0.9741 -3.5578 51 1 5.9924 1.0945 -1.1339 52 1 5.7587 -0.4161 -0.2215 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886914512.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:49 Heat of formation + Delta-G solvation = -139.637999 kcal Electronic energy + Delta-G solvation = -29060.763909 eV Core-core repulsion = 25059.972633 eV Total energy + Delta-G solvation = -4000.791276 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.00734 -39.00176 -38.30636 -36.30819 -34.80620 -34.00075 -32.66829 -32.13696 -30.06562 -28.55524 -27.49739 -26.28848 -25.73586 -25.20395 -23.93681 -23.35905 -21.77728 -21.17850 -20.15236 -18.30160 -16.88954 -16.60863 -16.57215 -16.43253 -16.18123 -15.84876 -15.77221 -15.28858 -15.13261 -14.82834 -14.76913 -14.42652 -14.17166 -13.93603 -13.54413 -13.15530 -12.93431 -12.65733 -12.47686 -12.34127 -12.16229 -12.12859 -11.93917 -11.81868 -11.66746 -11.53829 -11.39127 -11.17542 -11.07642 -10.98722 -10.83639 -10.71545 -10.54931 -10.41891 -10.16371 -9.93888 -9.60806 -9.58110 -8.87864 -8.45757 -8.44333 -7.61904 -6.04685 -4.09327 3.28477 3.35477 3.38709 3.41551 3.48119 3.75695 3.83037 4.26163 4.44334 4.45647 4.58105 4.64279 4.74230 4.84732 4.96871 5.02588 5.09194 5.10871 5.16025 5.19048 5.22827 5.28627 5.31242 5.32979 5.37383 5.40925 5.43696 5.54237 5.59433 5.63994 5.68635 5.78697 5.80521 5.87478 5.95881 6.06594 6.12107 6.16292 6.22540 6.24907 6.77949 6.97362 7.07259 7.10698 7.34437 7.45543 7.55908 7.92039 8.23748 8.44623 8.90605 9.11780 9.55741 11.03428 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.017337 B = 0.002374 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.695662 B =11790.603769 C =12711.905127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.384 6.384 3 C 0.028 3.972 4 C 0.100 3.900 5 H 0.091 0.909 6 N -0.683 5.683 7 C 0.074 3.926 8 C -0.136 4.136 9 C 0.505 3.495 10 O -0.547 6.547 11 N -0.603 5.603 12 C 0.084 3.916 13 C 0.244 3.756 14 C -0.524 4.524 15 H 0.057 0.943 16 C 0.060 3.940 17 N -0.895 5.895 18 Si 0.898 3.102 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.283 1.283 22 C -0.105 4.105 23 H 0.089 0.911 24 C -0.119 4.119 25 C -0.153 4.153 26 C 0.059 3.941 27 O -0.386 6.386 28 C 0.074 3.926 29 H 0.086 0.914 30 H 0.041 0.959 31 H 0.039 0.961 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.349 0.651 35 H 0.079 0.921 36 H 0.037 0.963 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.045 0.955 40 H 0.072 0.928 41 H 0.058 0.942 42 H 0.032 0.968 43 H 0.043 0.957 44 H 0.263 0.737 45 H 0.065 0.935 46 H 0.061 0.939 47 H 0.070 0.930 48 H 0.069 0.931 49 H 0.089 0.911 50 H 0.047 0.953 51 H 0.044 0.956 52 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.214 -10.791 -24.292 26.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C -0.051 4.051 4 C -0.011 4.011 5 H 0.109 0.891 6 N -0.314 5.314 7 C -0.055 4.055 8 C -0.177 4.177 9 C 0.291 3.709 10 O -0.425 6.425 11 N -0.335 5.335 12 C -0.060 4.060 13 C 0.125 3.875 14 C -0.563 4.563 15 H 0.075 0.925 16 C -0.142 4.142 17 N -0.534 5.534 18 Si 0.726 3.274 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.124 4.124 23 H 0.107 0.893 24 C -0.157 4.157 25 C -0.191 4.191 26 C -0.018 4.018 27 O -0.304 6.304 28 C -0.002 4.002 29 H 0.104 0.896 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.168 0.832 35 H 0.097 0.903 36 H 0.056 0.944 37 H 0.103 0.897 38 H 0.112 0.888 39 H 0.063 0.937 40 H 0.091 0.909 41 H 0.076 0.924 42 H 0.050 0.950 43 H 0.061 0.939 44 H 0.072 0.928 45 H 0.084 0.916 46 H 0.080 0.920 47 H 0.089 0.911 48 H 0.088 0.912 49 H 0.107 0.893 50 H 0.065 0.935 51 H 0.062 0.938 52 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.394 -10.362 -24.384 26.602 hybrid contribution -2.344 0.855 0.899 2.652 sum -4.738 -9.507 -23.485 25.776 Atomic orbital electron populations 1.22738 0.81050 1.02742 0.99947 1.87840 1.19594 1.27441 1.95364 1.23310 0.95817 0.85233 1.00721 1.21625 0.90289 0.98484 0.90670 0.89129 1.60517 1.54558 1.13219 1.03102 1.21706 1.00756 0.93620 0.89422 1.21596 1.03615 0.98589 0.93880 1.20295 0.77856 0.89325 0.83436 1.90659 1.50438 1.19400 1.82038 1.48161 1.65491 1.08760 1.11135 1.21638 0.99359 0.82597 1.02444 1.19286 0.96981 0.87454 0.83816 1.21468 0.97396 1.22799 1.14642 0.92515 1.24948 0.96790 0.95353 0.97139 1.69942 1.29715 1.25236 1.28495 0.86445 0.83637 0.78005 0.79335 1.19871 1.20930 1.20895 1.21650 0.97513 1.00445 0.92776 0.89279 1.21669 1.01118 0.98675 0.94212 1.22154 0.97211 1.01167 0.98568 1.22537 0.94499 0.97830 0.86935 1.87949 1.81610 1.46915 1.13957 1.22589 0.92597 0.96337 0.88701 0.89573 0.94032 0.94280 0.92954 0.92832 0.83158 0.90253 0.94442 0.89743 0.88764 0.93689 0.90901 0.92356 0.95029 0.93869 0.92777 0.91618 0.92000 0.91087 0.91214 0.89330 0.93469 0.93798 0.87239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.38 -3.80 9.11 -35.23 -0.32 -4.12 16 3 C 0.03 0.26 5.22 37.15 0.19 0.45 16 4 C 0.10 0.96 2.00 -67.71 -0.14 0.83 16 5 H 0.09 0.89 7.80 -51.93 -0.40 0.48 16 6 N -0.68 -7.38 5.37 -106.73 -0.57 -7.95 16 7 C 0.07 1.00 4.77 -3.83 -0.02 0.98 16 8 C -0.14 -1.96 4.51 -27.88 -0.13 -2.09 16 9 C 0.50 10.40 7.67 -10.99 -0.08 10.32 16 10 O -0.55 -13.66 15.56 5.55 0.09 -13.57 16 11 N -0.60 -12.89 2.86 -182.95 -0.52 -13.41 16 12 C 0.08 1.33 10.24 59.85 0.61 1.94 16 13 C 0.24 6.46 5.16 -5.19 -0.03 6.44 16 14 C -0.52 -15.00 9.39 -34.44 -0.32 -15.32 16 15 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 17 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 18 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 19 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 C -0.10 -0.96 2.01 -90.48 -0.18 -1.15 16 23 H 0.09 0.96 7.44 -51.93 -0.39 0.57 16 24 C -0.12 -0.93 4.97 -26.55 -0.13 -1.06 16 25 C -0.15 -1.12 6.14 -26.59 -0.16 -1.28 16 26 C 0.06 0.48 6.85 37.21 0.25 0.74 16 27 O -0.39 -4.27 10.76 -35.23 -0.38 -4.65 16 28 C 0.07 0.75 5.89 37.21 0.22 0.97 16 29 H 0.09 0.56 8.14 -51.92 -0.42 0.14 16 30 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.05 0.55 7.36 -51.93 -0.38 0.17 16 33 H 0.05 0.44 6.86 -51.93 -0.36 0.09 16 34 H 0.35 3.79 7.93 -39.29 -0.31 3.48 16 35 H 0.08 1.16 8.01 -51.92 -0.42 0.74 16 36 H 0.04 0.56 7.32 -51.93 -0.38 0.18 16 37 H 0.08 1.09 7.40 -51.93 -0.38 0.71 16 38 H 0.09 1.20 8.11 -51.93 -0.42 0.78 16 39 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 41 H 0.06 0.76 6.44 -51.93 -0.33 0.42 16 42 H 0.03 0.84 8.07 -51.93 -0.42 0.43 16 43 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 44 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 45 H 0.07 0.50 6.82 -51.93 -0.35 0.15 16 46 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 49 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 51 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 52 H 0.11 1.19 7.59 -51.93 -0.39 0.80 16 LS Contribution 409.28 15.07 6.17 6.17 Total: -1.00 -33.41 409.28 -8.24 -41.65 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -9.52 Total: 0.25 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: 1.11 Total: 4.75 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: -0.36 Total: -47.42 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.61 Total: -22.34 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.41 -8.24 -41.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886914512.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.987 kcal (2) G-P(sol) polarization free energy of solvation -33.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds