Wall clock time and date at job start Tue Mar 31 2020 04:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00239 * 2 1 4 4 C 1.53004 * 109.46803 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.46666 * 174.99988 * 4 3 2 6 6 N 1.46898 * 109.47262 * 294.99981 * 4 3 2 7 7 C 1.46906 * 110.99857 * 275.00437 * 6 4 3 8 8 C 1.53000 * 109.46905 * 180.02562 * 7 6 4 9 9 C 1.50703 * 109.46936 * 179.97438 * 8 7 6 10 10 O 1.21281 * 120.00067 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00067 * 180.02562 * 9 8 7 12 12 C 1.46503 * 119.99715 * 0.02562 * 11 9 8 13 13 C 1.46502 * 120.00330 * 179.97438 * 11 9 8 14 14 C 1.50704 * 109.46701 * 90.00009 * 13 11 9 15 15 H 1.08005 * 119.99885 * 359.97438 * 14 13 11 16 16 C 1.37875 * 119.99867 * 180.02562 * 14 13 11 17 17 N 1.31507 * 119.99804 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99959 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46834 * 90.00073 * 18 16 14 20 20 H 1.48496 * 109.47055 * 209.99909 * 18 16 14 21 21 H 1.48496 * 109.46999 * 330.00412 * 18 16 14 22 22 C 1.52999 * 109.47224 * 55.00289 * 4 3 2 23 23 H 1.09003 * 109.57332 * 299.83851 * 22 4 3 24 24 C 1.53173 * 109.52092 * 179.68075 * 22 4 3 25 25 C 1.53177 * 109.04588 * 183.11928 * 24 22 4 26 26 C 1.53092 * 109.16443 * 56.96276 * 25 24 22 27 27 O 1.42905 * 109.42428 * 302.41109 * 26 25 24 28 28 C 1.42901 * 114.09770 * 61.14988 * 27 26 25 29 29 H 1.09005 * 109.46943 * 300.00285 * 1 2 3 30 30 H 1.09000 * 109.46835 * 59.99676 * 1 2 3 31 31 H 1.09000 * 109.47356 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46876 * 60.00451 * 3 2 1 33 33 H 1.08998 * 109.46968 * 300.00056 * 3 2 1 34 34 H 1.00896 * 110.99868 * 38.95470 * 6 4 3 35 35 H 1.09009 * 109.46976 * 299.99855 * 7 6 4 36 36 H 1.08994 * 109.47725 * 59.99854 * 7 6 4 37 37 H 1.08997 * 109.47475 * 299.99826 * 8 7 6 38 38 H 1.09004 * 109.47122 * 59.99961 * 8 7 6 39 39 H 1.08998 * 109.47458 * 89.99960 * 12 11 9 40 40 H 1.09007 * 109.46823 * 210.00306 * 12 11 9 41 41 H 1.09001 * 109.47039 * 329.99860 * 12 11 9 42 42 H 1.08999 * 109.46906 * 210.00038 * 13 11 9 43 43 H 1.08993 * 109.46966 * 330.00406 * 13 11 9 44 44 H 0.97006 * 119.99895 * 180.02562 * 17 16 14 45 45 H 1.08995 * 109.54947 * 302.97997 * 24 22 4 46 46 H 1.09003 * 109.54613 * 63.24957 * 24 22 4 47 47 H 1.09004 * 109.51365 * 297.06592 * 25 24 22 48 48 H 1.08998 * 109.53811 * 176.88037 * 25 24 22 49 49 H 1.09002 * 109.48343 * 182.42096 * 26 25 24 50 50 H 1.08999 * 109.47546 * 62.39689 * 26 25 24 51 51 H 1.09002 * 109.48282 * 58.82206 * 28 27 26 52 52 H 1.08998 * 109.48567 * 178.85973 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 1 3.9786 2.1763 -0.0889 6 7 3.9769 0.5625 1.2561 7 6 4.1189 1.5663 2.3194 8 6 4.5796 0.8823 3.6081 9 6 4.7259 1.9120 4.6987 10 8 4.4859 3.0782 4.4677 11 7 5.1245 1.5372 5.9304 12 6 5.4160 0.1287 6.2089 13 6 5.2673 2.5383 6.9905 14 6 3.9614 2.6765 7.7299 15 1 3.1102 2.0788 7.4390 16 6 3.8531 3.5668 8.7771 17 7 4.8892 4.2957 9.1303 18 14 2.2343 3.7387 9.6933 19 1 2.2044 2.7824 10.8290 20 1 2.1025 5.1248 10.2096 21 1 1.1092 3.4454 8.7695 22 6 3.9790 0.3192 -1.1807 23 1 3.5390 -0.6740 -1.0913 24 6 5.5064 0.2040 -1.1857 25 6 5.9431 -0.5983 -2.4153 26 6 5.4075 0.0841 -3.6768 27 8 3.9846 0.1872 -3.5937 28 6 3.5195 0.9664 -2.4898 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6887 1.8463 0.8901 33 1 1.6886 1.8463 -0.8900 34 1 3.3465 -0.1739 1.5360 35 1 4.8566 2.3108 2.0199 36 1 3.1591 2.0538 2.4895 37 1 3.8423 0.1375 3.9078 38 1 5.5397 0.3951 3.4377 39 1 6.4681 -0.0715 6.0063 40 1 5.2000 -0.0870 7.2553 41 1 4.7967 -0.5032 5.5723 42 1 6.0465 2.2236 7.6847 43 1 5.5387 3.4976 6.5500 44 1 4.8131 4.9218 9.8673 45 1 5.9472 1.2000 -1.2251 46 1 5.8366 -0.3068 -0.2811 47 1 5.5429 -1.6102 -2.3508 48 1 7.0315 -0.6381 -2.4569 49 1 5.6788 -0.5059 -4.5523 50 1 5.8398 1.0810 -3.7621 51 1 3.9272 1.9749 -2.5594 52 1 2.4307 1.0121 -2.5101 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886914513.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:51 Heat of formation + Delta-G solvation = -139.298244 kcal Electronic energy + Delta-G solvation = -29055.141282 eV Core-core repulsion = 25054.364738 eV Total energy + Delta-G solvation = -4000.776543 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.04064 -39.01600 -38.30380 -36.34587 -34.81252 -33.81554 -32.68270 -32.33759 -30.13030 -28.44562 -27.50708 -26.27683 -25.73462 -24.95548 -24.38137 -23.27696 -21.72918 -21.08755 -20.18303 -18.30995 -16.93163 -16.75309 -16.55331 -16.25068 -16.17709 -16.06369 -15.72387 -15.30062 -15.13285 -14.94898 -14.80299 -14.28080 -14.02806 -13.83909 -13.56843 -13.31594 -12.92971 -12.75385 -12.54517 -12.24552 -12.13285 -12.04408 -11.95092 -11.81310 -11.70572 -11.53444 -11.32860 -11.17508 -11.04562 -11.02486 -10.86932 -10.62813 -10.55662 -10.45260 -10.16558 -9.91984 -9.63171 -9.61515 -8.88500 -8.45199 -8.44490 -7.62855 -6.04986 -4.09735 3.28598 3.34942 3.38190 3.42072 3.47425 3.63066 3.83995 4.27049 4.43189 4.45913 4.59611 4.74911 4.80397 4.90799 4.92686 4.99361 5.07809 5.11004 5.14029 5.18084 5.20098 5.28092 5.29210 5.33168 5.36709 5.42360 5.42641 5.50623 5.57927 5.64518 5.73671 5.84882 5.86838 5.88034 5.94690 6.09681 6.12693 6.22361 6.23534 6.27059 6.78965 6.92825 7.02623 7.06451 7.35337 7.44826 7.55021 7.91551 8.23250 8.43747 8.89861 9.11005 9.55305 11.03077 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.017575 B = 0.002357 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.755992 B =11878.871324 C =12779.293511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.024 3.976 4 C 0.100 3.900 5 H 0.091 0.909 6 N -0.680 5.680 7 C 0.074 3.926 8 C -0.136 4.136 9 C 0.505 3.495 10 O -0.547 6.547 11 N -0.604 5.604 12 C 0.084 3.916 13 C 0.244 3.756 14 C -0.525 4.525 15 H 0.056 0.944 16 C 0.060 3.940 17 N -0.895 5.895 18 Si 0.898 3.102 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.275 1.275 22 C -0.104 4.104 23 H 0.089 0.911 24 C -0.108 4.108 25 C -0.157 4.157 26 C 0.059 3.941 27 O -0.383 6.383 28 C 0.065 3.935 29 H 0.041 0.959 30 H 0.039 0.961 31 H 0.086 0.914 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.348 0.652 35 H 0.079 0.921 36 H 0.037 0.963 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.044 0.956 40 H 0.072 0.928 41 H 0.058 0.942 42 H 0.032 0.968 43 H 0.043 0.957 44 H 0.263 0.737 45 H 0.057 0.943 46 H 0.083 0.917 47 H 0.069 0.931 48 H 0.070 0.930 49 H 0.089 0.911 50 H 0.048 0.952 51 H 0.047 0.953 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.742 -11.541 -23.199 25.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C -0.055 4.055 4 C -0.010 4.010 5 H 0.109 0.891 6 N -0.311 5.311 7 C -0.055 4.055 8 C -0.176 4.176 9 C 0.291 3.709 10 O -0.425 6.425 11 N -0.336 5.336 12 C -0.060 4.060 13 C 0.125 3.875 14 C -0.564 4.564 15 H 0.074 0.926 16 C -0.142 4.142 17 N -0.534 5.534 18 Si 0.726 3.274 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.200 1.200 22 C -0.123 4.123 23 H 0.107 0.893 24 C -0.146 4.146 25 C -0.195 4.195 26 C -0.018 4.018 27 O -0.301 6.301 28 C -0.012 4.012 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.105 0.895 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.167 0.833 35 H 0.097 0.903 36 H 0.055 0.945 37 H 0.102 0.898 38 H 0.112 0.888 39 H 0.063 0.937 40 H 0.091 0.909 41 H 0.076 0.924 42 H 0.050 0.950 43 H 0.061 0.939 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.102 0.898 47 H 0.088 0.912 48 H 0.089 0.911 49 H 0.107 0.893 50 H 0.066 0.934 51 H 0.065 0.935 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.134 -11.015 -23.449 25.932 hybrid contribution -1.891 0.638 1.196 2.327 sum -3.025 -10.377 -22.254 24.740 Atomic orbital electron populations 1.22747 0.80998 1.02787 0.99981 1.87849 1.19651 1.27329 1.95366 1.23376 0.95944 0.85340 1.00793 1.21607 0.90023 0.98507 0.90887 0.89131 1.60481 1.54498 1.13154 1.02917 1.21704 1.00724 0.93576 0.89483 1.21592 1.03551 0.98555 0.93933 1.20296 0.77869 0.89365 0.83390 1.90659 1.50447 1.19567 1.81818 1.48162 1.65444 1.08748 1.11205 1.21636 0.99320 0.82657 1.02413 1.19281 0.96962 0.87291 0.83961 1.21429 0.97399 1.22593 1.14976 0.92568 1.24944 0.96791 0.95328 0.97131 1.69933 1.29753 1.24966 1.28736 0.86497 0.83781 0.77381 0.79756 1.20617 1.21066 1.19973 1.21637 0.96649 1.01019 0.92994 0.89292 1.21518 0.94561 1.00239 0.98265 1.22218 1.01036 1.00517 0.95703 1.22591 0.81394 0.99766 0.98066 1.87930 1.21385 1.73065 1.47757 1.22661 0.99488 0.93397 0.85652 0.94037 0.94187 0.89550 0.92863 0.92835 0.83274 0.90286 0.94467 0.89769 0.88844 0.93725 0.90896 0.92369 0.95047 0.93873 0.92720 0.92442 0.89827 0.91184 0.91104 0.89261 0.93397 0.93481 0.89166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.38 -3.82 9.19 -35.23 -0.32 -4.15 16 3 C 0.02 0.22 5.10 37.16 0.19 0.41 16 4 C 0.10 0.97 2.00 -67.71 -0.14 0.84 16 5 H 0.09 0.89 7.80 -51.93 -0.40 0.48 16 6 N -0.68 -7.37 5.57 -106.72 -0.59 -7.96 16 7 C 0.07 1.00 4.77 -3.82 -0.02 0.99 16 8 C -0.14 -1.96 4.51 -27.88 -0.13 -2.08 16 9 C 0.50 10.39 7.67 -10.98 -0.08 10.31 16 10 O -0.55 -13.65 15.56 5.56 0.09 -13.57 16 11 N -0.60 -12.87 2.86 -182.95 -0.52 -13.39 16 12 C 0.08 1.33 10.24 59.85 0.61 1.94 16 13 C 0.24 6.46 5.16 -5.19 -0.03 6.44 16 14 C -0.53 -15.01 9.39 -34.44 -0.32 -15.34 16 15 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -26.76 13.29 55.43 0.74 -26.02 16 18 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 22 C -0.10 -0.96 1.96 -90.48 -0.18 -1.13 16 23 H 0.09 0.96 7.57 -51.93 -0.39 0.57 16 24 C -0.11 -0.97 5.11 -26.55 -0.14 -1.11 16 25 C -0.16 -1.25 6.14 -26.59 -0.16 -1.41 16 26 C 0.06 0.47 6.84 37.20 0.25 0.73 16 27 O -0.38 -3.98 10.77 -35.23 -0.38 -4.35 16 28 C 0.07 0.59 5.70 37.21 0.21 0.80 16 29 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.56 7.35 -51.93 -0.38 0.17 16 33 H 0.05 0.43 6.77 -51.93 -0.35 0.08 16 34 H 0.35 3.80 7.94 -39.29 -0.31 3.49 16 35 H 0.08 1.16 8.01 -51.92 -0.42 0.74 16 36 H 0.04 0.56 7.32 -51.93 -0.38 0.18 16 37 H 0.08 1.09 7.40 -51.93 -0.38 0.71 16 38 H 0.09 1.19 8.11 -51.93 -0.42 0.77 16 39 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 41 H 0.06 0.75 6.44 -51.93 -0.33 0.42 16 42 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 43 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 44 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 45 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.08 0.83 7.73 -51.93 -0.40 0.43 16 47 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 51 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 52 H 0.09 0.78 6.69 -51.93 -0.35 0.43 16 LS Contribution 409.39 15.07 6.17 6.17 Total: -1.00 -33.39 409.39 -8.28 -41.67 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -9.52 Total: 0.31 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: 1.10 Total: 4.37 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: -0.38 Total: -47.38 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.62 Total: -22.07 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.39 -8.28 -41.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886914513.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.630 kcal (2) G-P(sol) polarization free energy of solvation -33.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds