Wall clock time and date at job start Tue Mar 31 2020 04:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00239 * 2 1 4 4 C 1.53004 * 109.46803 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.46666 * 174.99988 * 4 3 2 6 6 N 1.46898 * 109.47262 * 294.99981 * 4 3 2 7 7 C 1.46906 * 110.99857 * 275.00437 * 6 4 3 8 8 C 1.53000 * 109.46905 * 180.02562 * 7 6 4 9 9 C 1.50703 * 109.46936 * 179.97438 * 8 7 6 10 10 O 1.21281 * 120.00067 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00067 * 180.02562 * 9 8 7 12 12 C 1.46503 * 119.99715 * 0.02562 * 11 9 8 13 13 C 1.46502 * 120.00330 * 179.97438 * 11 9 8 14 14 C 1.50704 * 109.46701 * 90.00009 * 13 11 9 15 15 H 1.08005 * 119.99885 * 359.97438 * 14 13 11 16 16 C 1.37875 * 119.99867 * 180.02562 * 14 13 11 17 17 N 1.31507 * 119.99804 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99959 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46834 * 90.00073 * 18 16 14 20 20 H 1.48496 * 109.47055 * 209.99909 * 18 16 14 21 21 H 1.48496 * 109.46999 * 330.00412 * 18 16 14 22 22 C 1.52999 * 109.47224 * 55.00289 * 4 3 2 23 23 H 1.09003 * 109.57332 * 299.83851 * 22 4 3 24 24 C 1.53173 * 109.52092 * 179.68075 * 22 4 3 25 25 C 1.53177 * 109.04588 * 183.11928 * 24 22 4 26 26 C 1.53092 * 109.16443 * 56.96276 * 25 24 22 27 27 O 1.42905 * 109.42428 * 302.41109 * 26 25 24 28 28 C 1.42901 * 114.09770 * 61.14988 * 27 26 25 29 29 H 1.09005 * 109.46943 * 300.00285 * 1 2 3 30 30 H 1.09000 * 109.46835 * 59.99676 * 1 2 3 31 31 H 1.09000 * 109.47356 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46876 * 60.00451 * 3 2 1 33 33 H 1.08998 * 109.46968 * 300.00056 * 3 2 1 34 34 H 1.00896 * 110.99868 * 38.95470 * 6 4 3 35 35 H 1.09009 * 109.46976 * 299.99855 * 7 6 4 36 36 H 1.08994 * 109.47725 * 59.99854 * 7 6 4 37 37 H 1.08997 * 109.47475 * 299.99826 * 8 7 6 38 38 H 1.09004 * 109.47122 * 59.99961 * 8 7 6 39 39 H 1.08998 * 109.47458 * 89.99960 * 12 11 9 40 40 H 1.09007 * 109.46823 * 210.00306 * 12 11 9 41 41 H 1.09001 * 109.47039 * 329.99860 * 12 11 9 42 42 H 1.08999 * 109.46906 * 210.00038 * 13 11 9 43 43 H 1.08993 * 109.46966 * 330.00406 * 13 11 9 44 44 H 0.97006 * 119.99895 * 180.02562 * 17 16 14 45 45 H 1.08995 * 109.54947 * 302.97997 * 24 22 4 46 46 H 1.09003 * 109.54613 * 63.24957 * 24 22 4 47 47 H 1.09004 * 109.51365 * 297.06592 * 25 24 22 48 48 H 1.08998 * 109.53811 * 176.88037 * 25 24 22 49 49 H 1.09002 * 109.48343 * 182.42096 * 26 25 24 50 50 H 1.08999 * 109.47546 * 62.39689 * 26 25 24 51 51 H 1.09002 * 109.48282 * 58.82206 * 28 27 26 52 52 H 1.08998 * 109.48567 * 178.85973 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 1 3.9786 2.1763 -0.0889 6 7 3.9769 0.5625 1.2561 7 6 4.1189 1.5663 2.3194 8 6 4.5796 0.8823 3.6081 9 6 4.7259 1.9120 4.6987 10 8 4.4859 3.0782 4.4677 11 7 5.1245 1.5372 5.9304 12 6 5.4160 0.1287 6.2089 13 6 5.2673 2.5383 6.9905 14 6 3.9614 2.6765 7.7299 15 1 3.1102 2.0788 7.4390 16 6 3.8531 3.5668 8.7771 17 7 4.8892 4.2957 9.1303 18 14 2.2343 3.7387 9.6933 19 1 2.2044 2.7824 10.8290 20 1 2.1025 5.1248 10.2096 21 1 1.1092 3.4454 8.7695 22 6 3.9790 0.3192 -1.1807 23 1 3.5390 -0.6740 -1.0913 24 6 5.5064 0.2040 -1.1857 25 6 5.9431 -0.5983 -2.4153 26 6 5.4075 0.0841 -3.6768 27 8 3.9846 0.1872 -3.5937 28 6 3.5195 0.9664 -2.4898 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6887 1.8463 0.8901 33 1 1.6886 1.8463 -0.8900 34 1 3.3465 -0.1739 1.5360 35 1 4.8566 2.3108 2.0199 36 1 3.1591 2.0538 2.4895 37 1 3.8423 0.1375 3.9078 38 1 5.5397 0.3951 3.4377 39 1 6.4681 -0.0715 6.0063 40 1 5.2000 -0.0870 7.2553 41 1 4.7967 -0.5032 5.5723 42 1 6.0465 2.2236 7.6847 43 1 5.5387 3.4976 6.5500 44 1 4.8131 4.9218 9.8673 45 1 5.9472 1.2000 -1.2251 46 1 5.8366 -0.3068 -0.2811 47 1 5.5429 -1.6102 -2.3508 48 1 7.0315 -0.6381 -2.4569 49 1 5.6788 -0.5059 -4.5523 50 1 5.8398 1.0810 -3.7621 51 1 3.9272 1.9749 -2.5594 52 1 2.4307 1.0121 -2.5101 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886914513.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:51 Heat of formation + Delta-G solvation = -163.118394 kcal Electronic energy + Delta-G solvation = -29056.174201 eV Core-core repulsion = 25054.364738 eV Total energy + Delta-G solvation = -4001.809463 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.88010 -40.53111 -39.06942 -37.25286 -36.55485 -34.85631 -34.58554 -33.20236 -31.25327 -29.74240 -28.83020 -27.29455 -26.92885 -25.86509 -25.31617 -24.71842 -23.10896 -21.84645 -20.95323 -19.87079 -18.71205 -17.98926 -17.51996 -17.37887 -17.18584 -16.98444 -16.83868 -16.42861 -16.40161 -16.14107 -15.70964 -15.60751 -15.15369 -14.83440 -14.55703 -14.29500 -14.11922 -13.87906 -13.77943 -13.48954 -13.45012 -13.41208 -13.20723 -12.88191 -12.83312 -12.72314 -12.59658 -12.46829 -12.36334 -12.22013 -12.09739 -12.00473 -11.77637 -11.71457 -11.34696 -11.14886 -10.65841 -10.65054 -10.59360 -10.31794 -9.42513 -9.37004 -8.23806 -6.38951 1.34795 1.37761 1.48000 1.85616 2.28842 2.41994 2.73964 2.97355 3.05332 3.24778 3.68913 3.84569 3.87757 4.04941 4.07046 4.11467 4.17406 4.24480 4.28724 4.32790 4.38809 4.43826 4.50237 4.51595 4.54822 4.64563 4.67419 4.70441 4.74284 4.81484 4.84687 4.88577 4.96211 4.97622 5.01067 5.05066 5.07179 5.16004 5.22752 5.23162 5.47692 5.53647 5.55157 5.83910 5.95425 6.04920 6.16588 6.30792 6.45082 6.68513 6.80158 7.27009 7.49219 8.83214 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.017575 B = 0.002357 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.755992 B =11878.871324 C =12779.293511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.396 6.396 3 C 0.027 3.973 4 C 0.100 3.900 5 H 0.089 0.911 6 N -0.668 5.668 7 C 0.085 3.915 8 C -0.117 4.117 9 C 0.494 3.506 10 O -0.602 6.602 11 N -0.612 5.612 12 C 0.079 3.921 13 C 0.258 3.742 14 C -0.542 4.542 15 H 0.052 0.948 16 C 0.006 3.994 17 N -0.929 5.929 18 Si 0.969 3.031 19 H -0.262 1.262 20 H -0.281 1.281 21 H -0.273 1.273 22 C -0.092 4.092 23 H 0.075 0.925 24 C -0.108 4.108 25 C -0.153 4.153 26 C 0.054 3.946 27 O -0.402 6.402 28 C 0.066 3.934 29 H 0.038 0.962 30 H 0.050 0.950 31 H 0.098 0.902 32 H 0.040 0.960 33 H 0.068 0.932 34 H 0.351 0.649 35 H 0.065 0.935 36 H 0.017 0.983 37 H 0.109 0.891 38 H 0.121 0.879 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.095 0.905 42 H 0.023 0.977 43 H -0.003 1.003 44 H 0.267 0.733 45 H 0.056 0.944 46 H 0.075 0.925 47 H 0.064 0.936 48 H 0.084 0.916 49 H 0.103 0.897 50 H 0.055 0.945 51 H 0.054 0.946 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.493 -13.476 -24.095 27.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.315 6.315 3 C -0.051 4.051 4 C -0.010 4.010 5 H 0.107 0.893 6 N -0.299 5.299 7 C -0.044 4.044 8 C -0.157 4.157 9 C 0.283 3.717 10 O -0.484 6.484 11 N -0.343 5.343 12 C -0.063 4.063 13 C 0.136 3.864 14 C -0.580 4.580 15 H 0.070 0.930 16 C -0.193 4.193 17 N -0.568 5.568 18 Si 0.793 3.207 19 H -0.187 1.187 20 H -0.206 1.206 21 H -0.198 1.198 22 C -0.111 4.111 23 H 0.094 0.906 24 C -0.145 4.145 25 C -0.190 4.190 26 C -0.023 4.023 27 O -0.321 6.321 28 C -0.012 4.012 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.116 0.884 32 H 0.058 0.942 33 H 0.086 0.914 34 H 0.171 0.829 35 H 0.083 0.917 36 H 0.035 0.965 37 H 0.127 0.873 38 H 0.139 0.861 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.114 0.886 42 H 0.041 0.959 43 H 0.015 0.985 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.094 0.906 47 H 0.083 0.917 48 H 0.102 0.898 49 H 0.121 0.879 50 H 0.073 0.927 51 H 0.073 0.927 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.874 -13.011 -24.358 27.679 hybrid contribution -1.617 1.229 1.428 2.482 sum -3.491 -11.783 -22.931 26.016 Atomic orbital electron populations 1.22886 0.79954 1.03749 1.00359 1.87826 1.20842 1.27411 1.95443 1.23315 0.95619 0.85369 1.00838 1.21635 0.90398 0.98525 0.90449 0.89267 1.60449 1.54728 1.12337 1.02396 1.21483 0.99239 0.93737 0.89978 1.21515 1.05732 0.96859 0.91574 1.21395 0.76285 0.89905 0.84101 1.90628 1.52639 1.22348 1.82755 1.48211 1.65490 1.10154 1.10476 1.21938 1.01808 0.79721 1.02882 1.18750 0.95980 0.86951 0.84721 1.21691 0.97947 1.22900 1.15508 0.92956 1.25888 1.00602 0.94790 0.98053 1.70053 1.31958 1.25499 1.29336 0.85398 0.78876 0.77790 0.78637 1.18713 1.20590 1.19815 1.21493 0.96770 1.00046 0.92829 0.90609 1.21499 0.94258 1.00268 0.98483 1.22185 1.01846 0.99914 0.95097 1.22755 0.80379 1.00482 0.98656 1.87905 1.22723 1.73347 1.48125 1.22681 0.99733 0.93583 0.85154 0.94340 0.93131 0.88355 0.94189 0.91422 0.82931 0.91692 0.96467 0.87277 0.86116 0.91117 0.91740 0.88613 0.95928 0.98519 0.92378 0.92528 0.90638 0.91706 0.89759 0.87901 0.92719 0.92732 0.88931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.63 16 2 O -0.40 -7.40 9.19 -148.98 -1.37 -8.77 16 3 C 0.03 0.48 5.10 71.98 0.37 0.85 16 4 C 0.10 1.85 2.00 44.92 0.09 1.94 16 5 H 0.09 1.69 7.80 -2.39 -0.02 1.67 16 6 N -0.67 -13.55 5.57 -491.55 -2.74 -16.28 16 7 C 0.09 2.25 4.77 86.30 0.41 2.67 16 8 C -0.12 -3.14 4.51 29.85 0.13 -3.00 16 9 C 0.49 20.41 7.67 87.66 0.67 21.08 16 10 O -0.60 -31.24 15.56 -3.03 -0.05 -31.28 16 11 N -0.61 -26.10 2.86 -851.11 -2.43 -28.53 16 12 C 0.08 2.32 10.24 127.77 1.31 3.62 16 13 C 0.26 14.13 5.16 85.63 0.44 14.57 16 14 C -0.54 -31.60 9.39 25.60 0.24 -31.36 16 15 H 0.05 3.02 7.81 -2.91 -0.02 2.99 16 16 C 0.01 0.32 5.46 84.66 0.46 0.78 16 17 N -0.93 -56.72 13.29 21.45 0.28 -56.43 16 18 Si 0.97 45.15 29.54 68.60 2.03 47.18 16 19 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 20 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 21 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 22 C -0.09 -1.58 1.96 -10.70 -0.02 -1.60 16 23 H 0.08 1.54 7.57 -2.39 -0.02 1.52 16 24 C -0.11 -1.78 5.11 30.71 0.16 -1.62 16 25 C -0.15 -2.16 6.14 30.68 0.19 -1.97 16 26 C 0.05 0.77 6.84 72.01 0.49 1.26 16 27 O -0.40 -7.77 10.77 -148.98 -1.60 -9.37 16 28 C 0.07 1.09 5.70 72.01 0.41 1.50 16 29 H 0.04 0.57 8.14 -2.38 -0.02 0.55 16 30 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.04 0.83 7.35 -2.39 -0.02 0.81 16 33 H 0.07 1.02 6.77 -2.39 -0.02 1.00 16 34 H 0.35 6.98 7.94 -89.70 -0.71 6.27 16 35 H 0.06 1.91 8.01 -2.38 -0.02 1.89 16 36 H 0.02 0.52 7.32 -2.39 -0.02 0.50 16 37 H 0.11 2.45 7.40 -2.39 -0.02 2.43 16 38 H 0.12 2.67 8.11 -2.39 -0.02 2.65 16 39 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.06 2.02 8.07 -2.38 -0.02 2.00 16 41 H 0.10 2.10 6.44 -2.39 -0.02 2.09 16 42 H 0.02 1.26 8.07 -2.39 -0.02 1.24 16 43 H 0.00 -0.21 7.42 -2.39 -0.02 -0.23 16 44 H 0.27 15.26 8.31 -92.70 -0.77 14.49 16 45 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.07 1.38 7.73 -2.39 -0.02 1.36 16 47 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 48 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 49 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 50 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 51 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 52 H 0.09 1.47 6.69 -2.39 -0.02 1.45 16 Total: -1.00 -75.10 409.39 0.90 -74.20 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: 0.17 Total: 18.96 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: 6.60 Total: 10.34 kcal Atomic # 7 Polarization: -96.37 SS G_CDS: -4.88 Total: -101.25 kcal Atomic # 8 Polarization: -46.41 SS G_CDS: -3.02 Total: -49.43 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -75.10 0.90 -74.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886914513.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.914 kcal (2) G-P(sol) polarization free energy of solvation -75.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds