Wall clock time and date at job start Tue Mar 31 2020 05:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.40447 * 126.81437 * 2 1 4 4 C 1.30778 * 106.78975 * 179.97438 * 3 2 1 5 5 Br 1.89100 * 125.53567 * 179.73445 * 4 3 2 6 6 N 1.33295 * 108.92296 * 0.02562 * 4 3 2 7 7 C 1.30843 * 109.82289 * 0.02562 * 6 4 3 8 8 C 1.50695 * 125.95315 * 180.02562 * 7 6 4 9 9 N 1.46902 * 109.47299 * 269.94406 * 8 7 6 10 10 C 1.46897 * 110.99926 * 294.30691 * 9 8 7 11 11 C 1.53240 * 109.34204 * 172.74519 * 10 9 8 12 12 N 1.47080 * 108.52003 * 53.82497 * 11 10 9 13 13 C 1.36937 * 120.88087 * 128.80051 * 12 11 10 14 14 H 1.07996 * 119.99969 * 206.66550 * 13 12 11 15 15 C 1.38814 * 120.00262 * 26.65307 * 13 12 11 16 16 N 1.31620 * 119.99885 * 17.03094 * 15 13 12 17 17 Si 1.86797 * 120.00249 * 197.03050 * 15 13 12 18 18 H 1.48491 * 109.47381 * 90.00082 * 17 15 13 19 19 H 1.48507 * 109.46912 * 210.00469 * 17 15 13 20 20 H 1.48503 * 109.46851 * 329.99943 * 17 15 13 21 21 C 1.47074 * 118.23781 * 308.81585 * 12 11 10 22 22 C 1.46893 * 111.00463 * 169.99859 * 9 8 7 23 23 H 1.08993 * 109.47323 * 90.02397 * 1 2 3 24 24 H 1.09002 * 109.47145 * 210.02259 * 1 2 3 25 25 H 1.09001 * 109.47352 * 330.02045 * 1 2 3 26 26 H 1.09004 * 109.47573 * 29.94286 * 8 7 6 27 27 H 1.09004 * 109.47364 * 149.94505 * 8 7 6 28 28 H 1.09007 * 109.49013 * 292.70059 * 10 9 8 29 29 H 1.08999 * 109.49898 * 52.78073 * 10 9 8 30 30 H 1.08999 * 109.62792 * 294.11803 * 11 10 9 31 31 H 1.08997 * 109.79180 * 173.63153 * 11 10 9 32 32 H 0.96992 * 120.00181 * 179.97438 * 16 15 13 33 33 H 1.08997 * 109.63126 * 291.47459 * 21 12 11 34 34 H 1.09000 * 109.79149 * 170.99373 * 21 12 11 35 35 H 1.09001 * 109.49668 * 307.21428 * 22 9 8 36 36 H 1.09004 * 109.49394 * 67.26467 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3065 1.1244 0.0000 4 6 3.5353 0.6766 0.0006 5 35 5.0948 1.7460 -0.0063 6 7 3.5096 -0.6561 0.0003 7 6 2.2704 -1.0761 -0.0009 8 6 1.8240 -2.5154 -0.0010 9 7 1.6792 -2.9831 -1.3860 10 6 0.5912 -2.2721 -2.0707 11 6 0.5899 -2.6545 -3.5546 12 7 0.5374 -4.1207 -3.6592 13 6 -0.3948 -4.7359 -4.4514 14 1 -0.7233 -5.7382 -4.2198 15 6 -0.9178 -4.0710 -5.5521 16 7 -0.3019 -3.0131 -6.0356 17 14 -2.4956 -4.6777 -6.3469 18 1 -3.6595 -4.0150 -5.7058 19 1 -2.4768 -4.3524 -7.7958 20 1 -2.6046 -6.1483 -6.1712 21 6 1.5125 -4.9085 -2.8900 22 6 1.4775 -4.4374 -1.4323 23 1 -0.3633 -0.0004 -1.0276 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3634 0.8902 0.5135 26 1 2.5663 -3.1262 0.5129 27 1 0.8662 -2.5988 0.5127 28 1 -0.3630 -2.5496 -1.6227 29 1 0.7407 -1.1969 -1.9723 30 1 1.4997 -2.2860 -4.0285 31 1 -0.2807 -2.2210 -4.0467 32 1 -0.6671 -2.5488 -6.8049 33 1 2.5109 -4.7567 -3.3000 34 1 1.2535 -5.9662 -2.9393 35 1 2.2698 -4.9326 -0.8709 36 1 0.5111 -4.6848 -0.9927 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893992390.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:11 Heat of formation + Delta-G solvation = 137.634066 kcal Electronic energy + Delta-G solvation = -20720.788651 eV Core-core repulsion = 17517.669829 eV Total energy + Delta-G solvation = -3203.118822 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 329.055 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.29735 -38.27982 -34.93834 -34.17524 -32.33473 -31.48711 -30.68055 -30.08377 -28.20116 -26.82182 -24.98524 -22.87157 -22.61649 -21.71587 -20.41988 -19.22510 -17.07480 -17.04926 -16.40310 -15.13032 -15.08321 -14.79708 -14.49238 -14.17997 -13.69289 -13.62983 -13.42217 -13.21958 -13.12269 -12.74813 -12.01173 -11.77953 -11.49977 -11.32673 -11.12494 -10.84217 -10.81516 -10.57328 -10.43939 -10.16584 -10.12418 -9.91887 -9.83247 -9.72107 -9.43057 -8.58201 -8.06934 -6.74919 -5.84162 -3.26193 0.81956 1.33754 2.27141 2.60436 3.33081 3.40408 3.42018 4.00174 4.22939 4.39707 4.44811 4.81042 4.94652 5.19344 5.28300 5.32815 5.35966 5.37436 5.69261 5.72307 5.78412 5.96927 6.01216 6.09407 6.14697 6.38900 6.55169 6.56197 6.85643 7.10839 7.30350 7.48200 7.58026 7.73909 7.80953 8.36359 9.14248 9.77485 10.35800 11.24771 Molecular weight = 329.05amu Principal moments of inertia in cm(-1) A = 0.022658 B = 0.003111 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.478794 B = 8998.669297 C = 9184.466708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.367 5.367 3 N -0.284 5.284 4 C 0.218 3.782 5 Br 0.076 6.924 6 N -0.505 5.505 7 C 0.309 3.691 8 C 0.129 3.871 9 N -0.524 5.524 10 C 0.028 3.972 11 C 0.180 3.820 12 N -0.594 5.594 13 C -0.255 4.255 14 H 0.068 0.932 15 C 0.002 3.998 16 N -0.903 5.903 17 Si 0.903 3.097 18 H -0.288 1.288 19 H -0.291 1.291 20 H -0.279 1.279 21 C 0.148 3.852 22 C 0.047 3.953 23 H 0.092 0.908 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.110 0.890 27 H 0.054 0.946 28 H 0.030 0.970 29 H 0.055 0.945 30 H 0.026 0.974 31 H 0.090 0.910 32 H 0.255 0.745 33 H 0.028 0.972 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.387 7.575 16.154 18.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.159 5.159 3 N -0.116 5.116 4 C -0.143 4.143 5 Br 0.156 6.844 6 N -0.234 5.234 7 C 0.032 3.968 8 C -0.002 4.002 9 N -0.250 5.250 10 C -0.101 4.101 11 C 0.054 3.946 12 N -0.318 5.318 13 C -0.384 4.384 14 H 0.085 0.915 15 C -0.196 4.196 16 N -0.547 5.547 17 Si 0.733 3.267 18 H -0.215 1.215 19 H -0.217 1.217 20 H -0.204 1.204 21 C 0.021 3.979 22 C -0.081 4.081 23 H 0.110 0.890 24 H 0.113 0.887 25 H 0.114 0.886 26 H 0.128 0.872 27 H 0.072 0.928 28 H 0.049 0.951 29 H 0.073 0.927 30 H 0.044 0.956 31 H 0.108 0.892 32 H 0.065 0.935 33 H 0.046 0.954 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 6.311 8.676 15.734 19.044 hybrid contribution -2.060 -0.616 -0.118 2.153 sum 4.251 8.060 15.617 18.081 Atomic orbital electron populations 1.22200 0.73171 1.04965 1.04982 1.50330 1.08145 1.03599 1.53790 1.78172 1.00055 1.07935 1.25443 1.25459 0.92673 0.91523 1.04630 1.96784 1.26162 1.63697 1.97784 1.70422 1.20050 1.08680 1.24203 1.24283 0.85254 0.92566 0.94712 1.20624 1.00671 0.85715 0.93188 1.61915 1.46074 1.06104 1.10871 1.23156 0.90447 0.96445 1.00066 1.20824 1.01512 0.84320 0.87981 1.44117 1.34654 1.01125 1.51875 1.19210 1.14561 1.00443 1.04186 0.91453 1.25042 0.99720 0.98794 0.96070 1.70027 1.38113 1.22063 1.24501 0.86279 0.83584 0.78433 0.78418 1.21506 1.21706 1.20401 1.20985 0.93459 0.94907 0.88531 1.22673 0.98986 0.85791 1.00693 0.88965 0.88696 0.88614 0.87179 0.92767 0.95144 0.92657 0.95559 0.89200 0.93535 0.95388 0.92218 0.91285 0.94901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.87 10.00 59.84 0.60 1.47 16 2 N -0.37 -5.16 3.63 -65.11 -0.24 -5.40 16 3 N -0.28 -4.49 12.70 30.61 0.39 -4.10 16 4 C 0.22 3.47 8.69 -91.71 -0.80 2.68 16 5 Br 0.08 0.97 34.13 -68.01 -2.32 -1.35 16 6 N -0.50 -8.49 11.19 -10.37 -0.12 -8.60 16 7 C 0.31 4.65 6.63 -155.70 -1.03 3.62 16 8 C 0.13 1.70 5.29 -4.98 -0.03 1.67 16 9 N -0.52 -8.74 4.62 -235.76 -1.09 -9.83 16 10 C 0.03 0.50 4.74 -3.70 -0.02 0.49 16 11 C 0.18 4.23 5.43 -3.60 -0.02 4.21 16 12 N -0.59 -14.53 3.04 -172.02 -0.52 -15.06 16 13 C -0.25 -6.79 9.63 -15.06 -0.15 -6.93 16 14 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 15 C 0.00 0.07 4.93 -17.43 -0.09 -0.02 16 16 N -0.90 -25.87 11.15 55.49 0.62 -25.25 16 17 Si 0.90 21.15 29.59 -169.99 -5.03 16.13 16 18 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 C 0.15 3.00 6.69 -3.61 -0.02 2.97 16 22 C 0.05 0.77 5.62 -3.71 -0.02 0.75 16 23 H 0.09 0.95 6.77 -51.93 -0.35 0.60 16 24 H 0.09 0.73 7.11 -51.93 -0.37 0.36 16 25 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.11 1.30 7.97 -51.93 -0.41 0.89 16 27 H 0.05 0.59 7.11 -51.93 -0.37 0.22 16 28 H 0.03 0.53 8.14 -51.92 -0.42 0.11 16 29 H 0.06 0.96 4.61 -51.93 -0.24 0.72 16 30 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.09 2.33 6.11 -51.93 -0.32 2.02 16 32 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 33 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 1.15 7.96 -51.93 -0.41 0.73 16 35 H 0.07 0.93 7.99 -51.93 -0.41 0.52 16 36 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 311.56 15.07 4.70 4.70 Total: -1.00 -31.83 311.56 -9.73 -41.56 By element: Atomic # 1 Polarization: 0.86 SS G_CDS: -4.55 Total: -3.69 kcal Atomic # 6 Polarization: 12.47 SS G_CDS: -1.57 Total: 10.90 kcal Atomic # 7 Polarization: -67.29 SS G_CDS: -0.96 Total: -68.24 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.13 kcal Atomic # 35 Polarization: 0.97 SS G_CDS: -2.32 Total: -1.35 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.83 -9.73 -41.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893992390.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.193 kcal (2) G-P(sol) polarization free energy of solvation -31.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds