Wall clock time and date at job start Tue Mar 31 2020 05:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 108.79271 * 2 1 4 4 C 1.53622 * 108.93349 * 241.37962 * 2 1 3 5 5 S 1.83241 * 105.34980 * 241.63198 * 4 2 1 6 6 O 1.42089 * 109.61741 * 133.32285 * 5 4 2 7 7 O 1.42098 * 109.61419 * 267.09941 * 5 4 2 8 8 C 1.83745 * 95.25988 * 20.37383 * 5 4 2 9 9 C 1.52970 * 108.93553 * 118.61921 * 2 1 3 10 10 H 1.08998 * 109.65809 * 210.52123 * 9 2 1 11 11 N 1.46507 * 109.64888 * 330.96643 * 9 2 1 12 12 C 1.34778 * 119.99541 * 221.30199 * 11 9 2 13 13 O 1.21759 * 120.00273 * 0.02562 * 12 11 9 14 14 C 1.46241 * 119.99321 * 179.72239 * 12 11 9 15 15 S 1.75660 * 125.23273 * 0.30558 * 14 12 11 16 16 C 1.75470 * 92.09402 * 179.97438 * 15 14 12 17 17 C 1.32760 * 111.36262 * 359.97438 * 16 15 14 18 18 C 1.39545 * 125.22503 * 180.02562 * 14 12 11 19 19 C 1.40542 * 123.71775 * 359.97438 * 18 14 12 20 20 H 1.07996 * 119.99770 * 20.79546 * 19 18 14 21 21 C 1.40303 * 120.00210 * 200.79737 * 19 18 14 22 22 N 1.30634 * 120.00140 * 12.48667 * 21 19 18 23 23 Si 1.86798 * 120.00005 * 192.48236 * 21 19 18 24 24 H 1.48503 * 109.46861 * 60.00044 * 23 21 19 25 25 H 1.48501 * 109.47443 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47496 * 300.00407 * 23 21 19 27 27 H 1.08994 * 109.46723 * 305.99256 * 1 2 3 28 28 H 1.08999 * 109.46769 * 65.99512 * 1 2 3 29 29 H 1.08996 * 109.46804 * 185.99104 * 1 2 3 30 30 H 1.08998 * 110.26717 * 0.59795 * 4 2 1 31 31 H 1.08995 * 110.27449 * 122.66045 * 4 2 1 32 32 H 1.08998 * 110.99481 * 205.97144 * 8 5 4 33 33 H 1.09002 * 111.12484 * 81.95212 * 8 5 4 34 34 H 0.96993 * 119.99967 * 41.30609 * 11 9 2 35 35 H 1.08001 * 124.31988 * 180.02562 * 16 15 14 36 36 H 1.08005 * 122.78371 * 179.97438 * 17 16 15 37 37 H 0.97003 * 120.00072 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8811 1.0318 0.0000 4 6 2.0284 -0.6960 -1.2756 5 16 2.9800 -2.1502 -0.6944 6 8 2.5954 -3.2995 -1.4362 7 8 4.3534 -1.8054 -0.5765 8 6 2.2046 -2.2044 0.9706 9 6 2.0264 -0.6931 1.2701 10 1 2.9817 -0.2641 1.5724 11 7 1.0451 -0.5159 2.3436 12 6 1.4594 -0.2448 3.5971 13 8 2.6490 -0.1465 3.8374 14 6 0.4797 -0.0620 4.6673 15 16 -1.2629 -0.1726 4.4757 16 6 -1.5361 0.1689 6.1751 17 6 -0.3911 0.3492 6.8222 18 6 0.7857 0.2217 5.9989 19 6 2.0966 0.3687 6.4838 20 1 2.9021 0.5977 5.8018 21 6 2.3589 0.2180 7.8539 22 7 1.4498 -0.2931 8.6406 23 14 4.0080 0.7482 8.5530 24 1 4.2064 2.1992 8.3072 25 1 4.0339 0.4851 10.0143 26 1 5.0950 -0.0187 7.8932 27 1 -0.3632 0.6039 0.8315 28 1 -0.3633 0.4181 -0.9388 29 1 -0.3633 -1.0220 0.1073 30 1 1.1838 -1.0167 -1.8854 31 1 2.6729 -0.0258 -1.8443 32 1 2.8701 -2.6720 1.6962 33 1 1.2416 -2.7140 0.9390 34 1 0.0975 -0.5939 2.1521 35 1 -2.5113 0.2245 6.6359 36 1 -0.3448 0.5706 7.8784 37 1 1.6313 -0.3976 9.5878 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894448266.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:55 Heat of formation + Delta-G solvation = -82.981079 kcal Electronic energy + Delta-G solvation = -23728.076099 eV Core-core repulsion = 20110.029448 eV Total energy + Delta-G solvation = -3618.046651 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 329.059 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -39.25857 -37.24259 -37.01375 -36.08005 -35.85657 -33.16688 -32.65462 -30.27069 -28.99655 -27.76255 -26.27712 -24.33901 -22.33586 -20.67221 -19.55778 -18.99321 -18.87552 -18.03408 -16.72669 -16.49068 -15.91783 -15.78422 -15.46499 -15.24480 -14.72255 -14.43328 -13.87024 -13.77468 -13.59361 -13.12539 -12.86025 -12.55816 -12.40013 -12.28184 -12.20562 -12.10456 -11.94357 -11.86894 -11.51708 -11.36669 -11.24771 -11.06654 -10.91303 -10.69622 -10.53438 -10.42639 -10.23002 -9.72635 -9.33007 -8.57395 -8.47848 -7.59989 -7.24672 -7.15723 -4.62716 -0.04097 2.07027 2.38408 2.93440 2.94160 2.98582 3.04502 3.47764 3.55642 3.70497 3.76205 3.77909 3.89843 4.23910 4.36701 4.50312 4.57761 4.69258 4.91967 5.17508 5.19345 5.32634 5.36343 5.61384 5.72002 5.75403 5.95020 5.96747 6.07077 6.55287 6.73161 7.07199 7.08230 7.12575 7.38155 7.59688 8.24858 8.30064 8.49530 8.66611 9.43967 9.74409 Molecular weight = 329.06amu Principal moments of inertia in cm(-1) A = 0.015600 B = 0.003838 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.488197 B = 7293.898480 C = 8590.675726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.094 4.094 3 H 0.100 0.900 4 C -0.581 4.581 5 S 2.382 3.618 6 O -0.943 6.943 7 O -0.931 6.931 8 C -0.591 4.591 9 C 0.152 3.848 10 H 0.119 0.881 11 N -0.735 5.735 12 C 0.599 3.401 13 O -0.562 6.562 14 C -0.436 4.436 15 S -0.056 6.056 16 C -0.203 4.203 17 C -0.100 4.100 18 C 0.140 3.860 19 C -0.373 4.373 20 H 0.115 0.885 21 C 0.067 3.933 22 N -0.771 5.771 23 Si 0.926 3.074 24 H -0.258 1.258 25 H -0.276 1.276 26 H -0.257 1.257 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.139 0.861 31 H 0.136 0.864 32 H 0.141 0.859 33 H 0.138 0.862 34 H 0.396 0.604 35 H 0.138 0.862 36 H 0.146 0.854 37 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.135 0.706 -10.894 11.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.115 4.115 3 H 0.118 0.882 4 C -0.710 4.710 5 S 2.566 3.434 6 O -0.940 6.940 7 O -0.928 6.928 8 C -0.722 4.722 9 C 0.043 3.957 10 H 0.137 0.863 11 N -0.390 5.390 12 C 0.397 3.603 13 O -0.445 6.445 14 C -0.555 4.555 15 S 0.198 5.802 16 C -0.336 4.336 17 C -0.132 4.132 18 C 0.129 3.871 19 C -0.403 4.403 20 H 0.132 0.868 21 C -0.156 4.156 22 N -0.395 5.395 23 Si 0.749 3.251 24 H -0.182 1.182 25 H -0.200 1.200 26 H -0.181 1.181 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.157 0.843 31 H 0.155 0.845 32 H 0.160 0.840 33 H 0.156 0.844 34 H 0.233 0.767 35 H 0.155 0.845 36 H 0.164 0.836 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.579 -0.158 -12.114 12.387 hybrid contribution 0.190 0.770 1.918 2.076 sum -2.389 0.612 -10.197 10.491 Atomic orbital electron populations 1.22026 0.93615 1.02841 1.03081 1.21437 0.98396 1.01741 0.89884 0.88206 1.30417 1.14894 1.19258 1.06469 1.09207 0.77030 0.77668 0.79532 1.93596 1.84637 1.46402 1.69376 1.93642 1.28989 1.84309 1.85882 1.31065 1.14190 1.05402 1.21575 1.21151 0.96857 0.89593 0.88049 0.86326 1.45930 1.08527 1.76901 1.07612 1.16923 0.87658 0.75263 0.80421 1.90657 1.17150 1.54723 1.81964 1.22399 0.91384 1.43507 0.98174 1.82641 1.05537 1.82314 1.09720 1.24933 1.01073 1.10916 0.96711 1.21760 0.91054 0.99491 1.00895 1.17917 0.93208 0.87354 0.88662 1.20115 0.95177 1.32798 0.92183 0.86768 1.26434 0.99953 0.92023 0.97156 1.69667 1.34826 1.27970 1.07026 0.86033 0.80767 0.80743 0.77541 1.18236 1.20034 1.18120 0.90745 0.91655 0.91957 0.84290 0.84547 0.84032 0.84401 0.76745 0.84465 0.83628 0.89846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 7.56 37.16 0.28 -1.19 16 2 C -0.09 -0.95 3.14 -90.31 -0.28 -1.24 16 3 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 4 C -0.58 -4.58 6.93 37.48 0.26 -4.33 16 5 S 2.38 26.26 6.04 -107.50 -0.65 25.61 16 6 O -0.94 -12.96 18.16 -57.70 -1.05 -14.00 16 7 O -0.93 -13.73 18.16 -57.70 -1.05 -14.78 16 8 C -0.59 -7.10 7.08 38.27 0.27 -6.82 16 9 C 0.15 2.12 2.89 -66.83 -0.19 1.93 16 10 H 0.12 1.87 7.12 -51.93 -0.37 1.50 16 11 N -0.73 -12.57 4.55 -54.17 -0.25 -12.82 16 12 C 0.60 13.63 7.76 -13.05 -0.10 13.53 16 13 O -0.56 -14.40 13.84 5.14 0.07 -14.33 16 14 C -0.44 -10.44 6.51 -35.88 -0.23 -10.67 16 15 S -0.06 -1.13 22.25 -107.50 -2.39 -3.52 16 16 C -0.20 -4.20 11.07 28.86 0.32 -3.88 16 17 C -0.10 -2.33 9.06 -39.12 -0.35 -2.68 16 18 C 0.14 3.57 5.69 -106.21 -0.60 2.97 16 19 C -0.37 -9.66 8.57 -37.94 -0.33 -9.98 16 20 H 0.11 3.10 5.94 -52.49 -0.31 2.79 16 21 C 0.07 1.58 5.37 -17.28 -0.09 1.48 16 22 N -0.77 -17.94 10.79 55.57 0.60 -17.34 16 23 Si 0.93 17.90 29.58 -169.99 -5.03 12.87 16 24 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 25 H -0.28 -5.03 7.11 56.52 0.40 -4.63 16 26 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 27 H 0.07 0.80 6.92 -51.93 -0.36 0.44 16 28 H 0.06 0.48 8.11 -51.93 -0.42 0.06 16 29 H 0.06 0.53 7.98 -51.93 -0.41 0.11 16 30 H 0.14 0.83 7.61 -51.93 -0.40 0.43 16 31 H 0.14 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.14 1.81 8.14 -51.93 -0.42 1.39 16 33 H 0.14 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.40 6.05 5.37 -40.82 -0.22 5.83 16 35 H 0.14 2.40 8.06 -52.49 -0.42 1.98 16 36 H 0.15 3.38 6.32 -52.48 -0.33 3.05 16 37 H 0.29 6.05 8.29 -40.82 -0.34 5.71 16 LS Contribution 330.62 15.07 4.98 4.98 Total: -1.00 -32.96 330.62 -9.89 -42.85 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -4.07 Total: 11.38 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: -1.06 Total: -20.89 kcal Atomic # 7 Polarization: -30.51 SS G_CDS: 0.35 Total: -30.16 kcal Atomic # 8 Polarization: -41.09 SS G_CDS: -2.02 Total: -43.11 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.87 kcal Atomic # 16 Polarization: 25.12 SS G_CDS: -3.04 Total: 22.08 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.96 -9.89 -42.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894448266.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.135 kcal (2) G-P(sol) polarization free energy of solvation -32.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds