Wall clock time and date at job start Tue Mar 31 2020 04:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99937 * 2 1 4 4 H 1.48494 * 109.47259 * 270.00248 * 3 2 1 5 5 H 1.48497 * 109.47008 * 30.00312 * 3 2 1 6 6 H 1.48498 * 109.47012 * 150.00225 * 3 2 1 7 7 C 1.38816 * 120.00129 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99746 * 197.31729 * 7 2 1 9 9 N 1.36939 * 119.99868 * 17.03752 * 7 2 1 10 10 C 1.46959 * 120.59430 * 28.79187 * 9 7 2 11 11 C 1.53811 * 108.40111 * 124.75582 * 10 9 7 12 12 N 1.46971 * 108.57557 * 49.63557 * 11 10 9 13 13 C 1.34772 * 120.59133 * 124.66797 * 12 11 10 14 14 O 1.21584 * 120.00306 * 186.08374 * 13 12 11 15 15 C 1.47519 * 120.00204 * 6.08687 * 13 12 11 16 16 C 1.36800 * 126.93352 * 186.83572 * 15 13 12 17 17 C 1.41369 * 103.83669 * 179.97438 * 16 15 13 18 18 Br 1.89099 * 126.71564 * 180.08278 * 17 16 15 19 19 N 1.30205 * 106.56508 * 0.33993 * 17 16 15 20 20 O 1.20887 * 111.96055 * 359.77790 * 19 17 16 21 21 C 1.46959 * 118.81294 * 304.64926 * 12 11 10 22 22 C 1.46962 * 120.59007 * 209.06898 * 9 7 2 23 23 H 0.96995 * 120.00056 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.60800 * 244.54386 * 10 9 7 25 25 H 1.09003 * 109.60909 * 5.05046 * 10 9 7 26 26 H 1.08997 * 109.74145 * 289.84920 * 11 10 9 27 27 H 1.08999 * 109.53712 * 169.30403 * 11 10 9 28 28 H 1.07999 * 128.07333 * 0.03784 * 16 15 13 29 29 H 1.08996 * 109.61055 * 295.48278 * 21 12 11 30 30 H 1.08996 * 109.75119 * 175.05261 * 21 12 11 31 31 H 1.08999 * 109.61367 * 354.95190 * 22 9 7 32 32 H 1.09003 * 109.60569 * 115.45834 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0535 -1.2234 0.2778 9 7 1.3707 -2.3619 -0.3485 10 6 0.2369 -2.3393 -1.2833 11 6 0.5462 -3.2987 -2.4450 12 7 0.9774 -4.5876 -1.8856 13 6 0.3479 -5.7290 -2.2281 14 8 0.6393 -6.7729 -1.6771 15 6 -0.6947 -5.7118 -3.2716 16 6 -1.5087 -6.7486 -3.6374 17 6 -2.3100 -6.2027 -4.6661 18 35 -3.6696 -7.0928 -5.6331 19 7 -1.9249 -4.9686 -4.8213 20 8 -1.0324 -4.6745 -4.0608 21 6 2.1077 -4.6095 -0.9466 22 6 1.8020 -3.6507 0.2108 23 1 -0.4850 0.8400 0.0004 24 1 -0.6679 -2.6631 -0.7687 25 1 0.1001 -1.3286 -1.6680 26 1 1.3420 -2.8836 -3.0633 27 1 -0.3508 -3.4430 -3.0472 28 1 -1.5339 -7.7500 -3.2336 29 1 3.0147 -4.2877 -1.4582 30 1 2.2449 -5.6189 -0.5589 31 1 2.6990 -3.5064 0.8130 32 1 1.0061 -4.0657 0.8292 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905136896.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:44 Heat of formation + Delta-G solvation = 78.465086 kcal Electronic energy + Delta-G solvation = -20361.532447 eV Core-core repulsion = 16987.722020 eV Total energy + Delta-G solvation = -3373.810427 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 329.016 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -45.34991 -39.77192 -37.06876 -34.77310 -33.99724 -32.54181 -31.38468 -30.97823 -30.23058 -27.28981 -24.69168 -23.78706 -23.12979 -22.76609 -20.93467 -19.62072 -18.15143 -17.86568 -16.74952 -16.16956 -15.98401 -14.96230 -14.81614 -14.46453 -14.08963 -13.73176 -13.60667 -13.42936 -13.28138 -12.63468 -12.33492 -12.29887 -11.68774 -11.37086 -10.89685 -10.85326 -10.83826 -10.60325 -10.37363 -10.24102 -10.15741 -10.00951 -9.92884 -9.81987 -8.70876 -8.47953 -6.80992 -5.92282 -3.37961 0.60695 0.74886 1.54059 2.42667 2.96166 3.20002 3.31592 3.39230 3.40035 3.96197 4.39228 4.44549 4.58138 4.80356 5.23870 5.27839 5.43672 5.67954 5.70866 5.77857 6.00114 6.07220 6.24204 6.25095 6.64796 6.75106 7.05982 7.32428 7.47384 7.66583 7.69147 8.06275 8.28763 9.04469 9.66625 10.23034 11.15672 Molecular weight = 329.02amu Principal moments of inertia in cm(-1) A = 0.024705 B = 0.003137 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.100121 B = 8922.253527 C = 9809.149256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.006 3.994 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.260 4.260 8 H 0.070 0.930 9 N -0.591 5.591 10 C 0.159 3.841 11 C 0.068 3.932 12 N -0.576 5.576 13 C 0.593 3.407 14 O -0.527 6.527 15 C -0.054 4.054 16 C -0.134 4.134 17 C -0.001 4.001 18 Br 0.053 6.947 19 N -0.318 5.318 20 O 0.141 5.859 21 C 0.095 3.905 22 C 0.130 3.870 23 H 0.257 0.743 24 H 0.026 0.974 25 H 0.104 0.896 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.192 0.808 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.209 -13.947 -10.743 18.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.193 4.193 3 Si 0.735 3.265 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.389 4.389 8 H 0.087 0.913 9 N -0.313 5.313 10 C 0.033 3.967 11 C -0.056 4.056 12 N -0.306 5.306 13 C 0.377 3.623 14 O -0.405 6.405 15 C -0.120 4.120 16 C -0.159 4.159 17 C -0.237 4.237 18 Br 0.135 6.865 19 N -0.018 5.018 20 O 0.065 5.935 21 C -0.028 4.028 22 C 0.003 3.997 23 H 0.067 0.933 24 H 0.044 0.956 25 H 0.122 0.878 26 H 0.093 0.907 27 H 0.102 0.898 28 H 0.209 0.791 29 H 0.090 0.910 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -6.024 -13.649 -11.581 18.887 hybrid contribution 0.568 0.464 0.488 0.881 sum -5.457 -13.185 -11.093 18.074 Atomic orbital electron populations 1.70001 1.05350 1.25918 1.53189 1.25105 0.95305 0.98656 1.00270 0.86243 0.79117 0.83306 0.77806 1.21251 1.21698 1.20332 1.19216 0.92793 0.84508 1.42414 0.91273 1.44033 1.36689 1.01905 1.48703 1.21283 0.89355 0.98450 0.87648 1.23266 0.99934 0.83354 0.98998 1.48062 1.32164 1.06598 1.43781 1.16643 0.80109 0.84686 0.80890 1.90830 1.64845 1.31118 1.53709 1.24457 1.01598 0.87736 0.98203 1.22767 0.94677 1.01915 0.96506 1.25227 1.02745 0.93593 1.02163 1.96808 1.44376 1.73378 1.71951 1.73955 1.02049 1.14985 1.10772 1.85266 1.38285 1.34596 1.35359 1.22409 0.87029 1.01710 0.91669 1.21321 0.98855 0.86974 0.92537 0.93341 0.95585 0.87786 0.90690 0.89790 0.79064 0.91006 0.89460 0.91045 0.95556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 47. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.81 11.22 55.49 0.62 -24.19 16 2 C 0.01 0.15 4.91 -17.43 -0.09 0.07 16 3 Si 0.91 20.62 29.59 -169.99 -5.03 15.59 16 4 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 7 C -0.26 -6.67 9.57 -15.06 -0.14 -6.81 16 8 H 0.07 1.73 7.89 -52.49 -0.41 1.32 16 9 N -0.59 -13.77 2.96 -171.77 -0.51 -14.28 16 10 C 0.16 3.51 5.53 -3.37 -0.02 3.49 16 11 C 0.07 1.20 6.37 -3.36 -0.02 1.18 16 12 N -0.58 -9.83 2.95 -173.46 -0.51 -10.34 16 13 C 0.59 9.78 7.68 -12.48 -0.10 9.69 16 14 O -0.53 -9.54 16.34 5.29 0.09 -9.46 16 15 C -0.05 -0.79 6.91 -36.32 -0.25 -1.04 16 16 C -0.13 -1.69 10.96 -38.91 -0.43 -2.12 16 17 C 0.00 -0.02 7.82 -17.05 -0.13 -0.15 16 18 Br 0.05 0.54 34.13 -68.01 -2.32 -1.78 16 19 N -0.32 -4.62 12.05 31.78 0.38 -4.23 16 20 O 0.14 2.07 7.89 15.55 0.12 2.20 16 21 C 0.10 1.59 6.59 -3.60 -0.02 1.56 16 22 C 0.13 2.54 6.67 -3.60 -0.02 2.52 16 23 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 24 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.10 2.54 6.02 -51.93 -0.31 2.23 16 26 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.08 1.36 4.15 -53.08 -0.22 1.13 16 28 H 0.19 1.97 8.06 -52.49 -0.42 1.55 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.09 1.37 7.00 -51.93 -0.36 1.01 16 31 H 0.07 1.32 7.93 -51.93 -0.41 0.91 16 32 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 293.39 15.07 4.42 4.42 Total: -1.00 -28.46 293.39 -6.93 -35.38 By element: Atomic # 1 Polarization: 1.27 SS G_CDS: -2.97 Total: -1.70 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: -1.22 Total: 8.39 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: -0.01 Total: -53.04 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: 0.21 Total: -7.26 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.59 kcal Atomic # 35 Polarization: 0.54 SS G_CDS: -2.32 Total: -1.78 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.46 -6.93 -35.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905136896.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.850 kcal (2) G-P(sol) polarization free energy of solvation -28.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds