Wall clock time and date at job start Tue Mar 31 2020 05:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35692 * 117.00127 * 2 1 4 4 C 1.39032 * 119.90823 * 359.72135 * 3 2 1 5 5 C 1.37664 * 120.09732 * 179.76232 * 4 3 2 6 6 C 1.39815 * 119.89917 * 0.51496 * 5 4 3 7 7 C 1.47473 * 120.09072 * 179.76227 * 6 5 4 8 8 O 1.21502 * 119.99710 * 179.97438 * 7 6 5 9 9 O 1.34742 * 119.99561 * 359.97438 * 7 6 5 10 10 C 1.45205 * 116.99784 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47503 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.47545 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99598 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00139 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99726 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 119.99952 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.46872 * 90.00069 * 16 14 12 18 18 H 1.48495 * 109.46978 * 209.99546 * 16 14 12 19 19 H 1.48491 * 109.47166 * 329.99868 * 16 14 12 20 20 C 1.39774 * 119.81579 * 359.74408 * 6 5 4 21 21 C 1.37696 * 119.90845 * 359.97438 * 20 6 5 22 22 S 1.76198 * 119.95399 * 179.97438 * 21 20 6 23 23 N 1.65603 * 107.21628 * 115.02619 * 22 21 20 24 24 O 1.42101 * 106.40469 * 228.56451 * 22 21 20 25 25 O 1.42097 * 106.40210 * 1.49022 * 22 21 20 26 26 H 1.09001 * 109.47103 * 300.00462 * 1 2 3 27 27 H 1.09004 * 109.47054 * 59.99966 * 1 2 3 28 28 H 1.09000 * 109.47187 * 180.02562 * 1 2 3 29 29 H 1.08006 * 119.95478 * 0.02562 * 4 3 2 30 30 H 1.07995 * 120.04942 * 180.23027 * 5 4 3 31 31 H 1.08997 * 109.47197 * 300.00388 * 10 9 7 32 32 H 1.09000 * 109.46949 * 60.00597 * 10 9 7 33 33 H 1.09002 * 109.47381 * 300.00689 * 11 10 9 34 34 H 1.09006 * 109.46882 * 59.99924 * 11 10 9 35 35 H 0.97001 * 119.99640 * 180.02562 * 15 14 12 36 36 H 1.07998 * 120.04316 * 180.02562 * 20 6 5 37 37 H 0.96994 * 120.00371 * 150.00024 * 23 22 21 38 38 H 0.97001 * 119.99543 * 330.00300 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 6 1.2861 2.3738 -0.0059 5 6 1.9070 3.6025 -0.0009 6 6 3.3031 3.6778 -0.0009 7 6 3.9727 4.9918 -0.0010 8 8 5.1860 5.0553 -0.0005 9 8 3.2388 6.1218 -0.0015 10 6 3.9648 7.3793 -0.0010 11 6 2.9706 8.5423 -0.0011 12 6 3.7241 9.8474 -0.0011 13 1 4.8041 9.8473 -0.0006 14 6 3.0348 11.0414 -0.0018 15 7 3.6924 12.1803 -0.0023 16 14 1.1668 11.0414 -0.0019 17 1 0.6717 11.0422 1.3982 18 1 0.6719 12.2536 -0.7024 19 1 0.6718 9.8287 -0.7013 20 6 4.0624 2.5043 -0.0005 21 6 3.4333 1.2795 0.0004 22 16 4.3893 -0.2006 0.0003 23 7 4.0942 -0.9749 1.4341 24 8 3.8485 -1.0276 -1.0209 25 8 5.7517 0.2017 0.0346 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 0.2076 2.3147 -0.0100 30 1 1.3166 4.5068 -0.0017 31 1 4.5908 7.4370 0.8895 32 1 4.5921 7.4371 -0.8905 33 1 2.3442 8.4848 -0.8913 34 1 2.3436 8.4843 0.8887 35 1 3.2074 13.0204 -0.0024 36 1 5.1410 2.5582 -0.0001 37 1 4.1413 -1.9425 1.4815 38 1 3.8741 -0.4606 2.2266 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000913258165.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:47 Heat of formation + Delta-G solvation = -172.560862 kcal Electronic energy + Delta-G solvation = -25266.572164 eV Core-core repulsion = 21201.888170 eV Total energy + Delta-G solvation = -4064.683993 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.00449 -39.98005 -37.94513 -37.25263 -36.20742 -36.05621 -33.51157 -33.38256 -32.18078 -31.21583 -30.57996 -28.15860 -25.56653 -24.10066 -23.53769 -21.30625 -20.69864 -19.86482 -19.17885 -18.20966 -17.69707 -17.66999 -16.92145 -16.71603 -16.45832 -16.12670 -16.09167 -15.86121 -15.29420 -14.90172 -14.40480 -14.22225 -13.79432 -13.73304 -13.17451 -13.10676 -12.65142 -12.47072 -12.41126 -12.29878 -12.21786 -12.16486 -11.79513 -11.52769 -11.35271 -11.16430 -10.77570 -10.76543 -10.69491 -10.09080 -10.02247 -9.99333 -9.77613 -9.39910 -9.00796 -8.66777 -6.16883 -4.18420 0.06966 0.27431 0.51443 2.27512 2.42174 2.84504 2.89276 3.22409 3.23185 3.30904 3.33905 3.43369 4.02882 4.17458 4.33888 4.48020 4.57150 4.60037 4.64688 4.79138 4.95020 4.98590 5.16344 5.19767 5.36445 5.59871 5.64963 5.75781 5.89651 5.91618 5.97463 6.38581 6.48310 6.65854 6.69948 7.10098 7.15236 7.57275 7.98379 8.35428 8.85025 9.42194 10.95712 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.022470 B = 0.002569 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.806726 B =10894.909318 C =11941.956517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.303 6.303 3 C 0.250 3.750 4 C -0.239 4.239 5 C 0.033 3.967 6 C -0.173 4.173 7 C 0.504 3.496 8 O -0.505 6.505 9 O -0.358 6.358 10 C 0.083 3.917 11 C -0.009 4.009 12 C -0.528 4.528 13 H 0.076 0.924 14 C 0.072 3.928 15 N -0.896 5.896 16 Si 0.882 3.118 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.264 1.264 20 C 0.077 3.923 21 C -0.723 4.723 22 S 2.713 3.287 23 N -1.244 6.244 24 O -0.952 6.952 25 O -0.958 6.958 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.110 0.890 29 H 0.148 0.852 30 H 0.155 0.845 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.028 0.972 34 H 0.024 0.976 35 H 0.266 0.734 36 H 0.167 0.833 37 H 0.420 0.580 38 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.923 -29.502 3.476 31.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.214 6.214 3 C 0.200 3.800 4 C -0.259 4.259 5 C 0.015 3.985 6 C -0.175 4.175 7 C 0.348 3.652 8 O -0.395 6.395 9 O -0.275 6.275 10 C 0.011 3.989 11 C -0.046 4.046 12 C -0.566 4.566 13 H 0.094 0.906 14 C -0.130 4.130 15 N -0.534 5.534 16 Si 0.709 3.291 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.188 1.188 20 C 0.057 3.943 21 C -0.810 4.810 22 S 2.799 3.201 23 N -0.918 5.918 24 O -0.941 6.941 25 O -0.948 6.948 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.128 0.872 29 H 0.165 0.835 30 H 0.173 0.827 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.046 0.954 34 H 0.042 0.958 35 H 0.076 0.924 36 H 0.185 0.815 37 H 0.251 0.749 38 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -7.933 -29.615 2.609 30.769 hybrid contribution -1.743 0.846 0.661 2.048 sum -9.676 -28.768 3.270 30.527 Atomic orbital electron populations 1.23310 0.76360 1.05185 1.02370 1.86102 1.23273 1.25878 1.86107 1.18624 0.90390 0.85195 0.85777 1.21354 1.01011 0.91650 1.11848 1.21701 0.93499 0.98464 0.84836 1.19268 0.93926 0.91280 1.13016 1.20760 0.85706 0.85131 0.73573 1.90855 1.14738 1.88160 1.45770 1.86504 1.42156 1.15726 1.83066 1.23460 0.95779 0.77574 1.02125 1.19630 0.95376 0.91748 0.97848 1.20832 0.95256 0.88050 1.52493 0.90576 1.24941 0.98694 0.95253 0.94133 1.69896 1.36020 0.97505 1.49949 0.86740 0.85782 0.77911 0.78675 1.20079 1.21157 1.18830 1.20992 1.01540 0.88447 0.83293 1.29901 1.03698 1.19287 1.28065 1.01333 0.73422 0.72678 0.72681 1.53026 1.91270 1.19065 1.28437 1.93610 1.79543 1.65979 1.55009 1.93636 1.32184 1.82910 1.86045 0.91631 0.91501 0.87152 0.83471 0.82742 0.91432 0.91395 0.95375 0.95817 0.92387 0.81525 0.74947 0.75692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.81 101.05 0.99 1.07 16 2 O -0.30 -2.33 9.26 -28.80 -0.27 -2.59 16 3 C 0.25 2.27 6.65 -39.01 -0.26 2.01 16 4 C -0.24 -1.96 9.01 -39.50 -0.36 -2.32 16 5 C 0.03 0.34 9.61 -39.20 -0.38 -0.03 16 6 C -0.17 -2.27 5.87 -104.97 -0.62 -2.89 16 7 C 0.50 8.54 7.89 34.49 0.27 8.81 16 8 O -0.51 -9.88 16.13 -19.27 -0.31 -10.19 16 9 O -0.36 -6.49 9.46 -40.61 -0.38 -6.87 16 10 C 0.08 1.73 5.41 37.16 0.20 1.93 16 11 C -0.01 -0.20 4.42 -27.89 -0.12 -0.32 16 12 C -0.53 -14.78 9.66 -34.44 -0.33 -15.11 16 13 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 14 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 15 N -0.90 -27.04 13.96 55.43 0.77 -26.27 16 16 Si 0.88 20.94 27.47 -169.99 -4.67 16.27 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 19 H -0.26 -5.97 6.54 56.52 0.37 -5.60 16 20 C 0.08 0.93 9.08 -39.21 -0.36 0.58 16 21 C -0.72 -7.50 5.91 -39.50 -0.23 -7.73 16 22 S 2.71 26.79 5.86 -107.50 -0.63 26.16 16 23 N -1.24 -6.77 9.52 60.35 0.57 -6.20 16 24 O -0.95 -11.96 17.29 -62.57 -1.08 -13.04 16 25 O -0.96 -12.51 16.96 -57.17 -0.97 -13.48 16 26 H 0.07 0.15 7.66 -51.93 -0.40 -0.25 16 27 H 0.07 0.21 7.64 -51.93 -0.40 -0.18 16 28 H 0.11 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.15 0.73 6.28 -52.48 -0.33 0.41 16 30 H 0.15 1.44 7.60 -52.49 -0.40 1.04 16 31 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 33 H 0.03 0.65 7.20 -51.93 -0.37 0.28 16 34 H 0.02 0.54 7.57 -51.93 -0.39 0.14 16 35 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.17 2.10 6.91 -52.49 -0.36 1.73 16 37 H 0.42 1.49 8.96 -34.47 -0.31 1.18 16 38 H 0.42 1.41 8.96 -34.47 -0.31 1.10 16 LS Contribution 344.96 15.07 5.20 5.20 Total: -1.00 -37.53 344.96 -7.18 -44.71 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -4.12 Total: -1.66 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -1.29 Total: -12.05 kcal Atomic # 7 Polarization: -33.82 SS G_CDS: 1.35 Total: -32.47 kcal Atomic # 8 Polarization: -43.16 SS G_CDS: -3.01 Total: -46.17 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.67 Total: 16.27 kcal Atomic # 16 Polarization: 26.79 SS G_CDS: -0.63 Total: 26.16 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -37.53 -7.18 -44.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000913258165.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.849 kcal (2) G-P(sol) polarization free energy of solvation -37.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds