Wall clock time and date at job start Tue Mar 31 2020 04:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.46765 * 2 1 4 4 C 1.42903 * 114.00006 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47107 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47368 * 180.02562 * 5 4 3 7 7 C 1.52992 * 109.47413 * 180.02562 * 6 5 4 8 8 C 1.53002 * 109.47202 * 180.02562 * 7 6 5 9 9 C 1.50699 * 109.47124 * 180.02562 * 8 7 6 10 10 O 1.21284 * 120.00211 * 359.97438 * 9 8 7 11 11 N 1.34780 * 120.00030 * 180.02562 * 9 8 7 12 12 C 1.46502 * 119.99852 * 179.97438 * 11 9 8 13 13 H 1.08996 * 109.45951 * 325.02443 * 12 11 9 14 14 C 1.53041 * 109.45810 * 84.99924 * 12 11 9 15 15 C 1.53197 * 109.30661 * 181.38318 * 14 12 11 16 16 N 1.46917 * 108.77712 * 305.36115 * 15 14 12 17 17 C 1.36939 * 120.63194 * 233.58779 * 16 15 14 18 18 H 1.08009 * 119.99821 * 152.80257 * 17 16 15 19 19 C 1.38804 * 120.00081 * 332.80166 * 17 16 15 20 20 N 1.31616 * 120.00086 * 159.75129 * 19 17 16 21 21 Si 1.86801 * 120.00055 * 339.75119 * 19 17 16 22 22 H 1.48509 * 109.46983 * 94.89297 * 21 19 17 23 23 H 1.48495 * 109.47310 * 214.89129 * 21 19 17 24 24 H 1.48496 * 109.46989 * 334.89749 * 21 19 17 25 25 C 1.46927 * 118.73963 * 53.61429 * 16 15 14 26 26 C 1.53038 * 109.45607 * 205.06391 * 12 11 9 27 27 H 1.08996 * 109.50253 * 298.56926 * 26 12 11 28 28 O 1.42903 * 109.50066 * 58.66482 * 26 12 11 29 29 H 1.08999 * 109.47542 * 300.00023 * 1 2 3 30 30 H 1.09003 * 109.47269 * 60.00551 * 1 2 3 31 31 H 1.09011 * 109.46621 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47542 * 239.99977 * 2 1 3 33 33 H 1.09003 * 109.47269 * 119.99449 * 2 1 3 34 34 H 1.09000 * 109.47063 * 60.00256 * 4 3 2 35 35 H 1.08999 * 109.46859 * 299.99951 * 4 3 2 36 36 H 1.08996 * 109.46966 * 300.00454 * 5 4 3 37 37 H 1.09000 * 109.46971 * 60.00174 * 5 4 3 38 38 H 1.09007 * 109.46981 * 300.00438 * 6 5 4 39 39 H 1.08999 * 109.46918 * 59.99311 * 6 5 4 40 40 H 1.09008 * 109.46922 * 299.99534 * 7 6 5 41 41 H 1.08998 * 109.47408 * 59.99376 * 7 6 5 42 42 H 1.08999 * 109.46502 * 299.99434 * 8 7 6 43 43 H 1.09000 * 109.47371 * 59.99708 * 8 7 6 44 44 H 0.97001 * 119.99508 * 359.97438 * 11 9 8 45 45 H 1.08999 * 109.49750 * 301.32833 * 14 12 11 46 46 H 1.09000 * 109.49792 * 61.43118 * 14 12 11 47 47 H 1.09004 * 109.58645 * 65.15501 * 15 14 12 48 48 H 1.09000 * 109.58269 * 185.57636 * 15 14 12 49 49 H 0.97007 * 120.00370 * 180.02562 * 20 19 17 50 50 H 1.09002 * 109.58817 * 66.17342 * 25 16 15 51 51 H 1.09000 * 109.59156 * 186.46027 * 25 16 15 52 52 H 0.96695 * 114.00270 * 179.97438 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8252 2.9386 0.0012 6 6 5.3504 3.0595 0.0012 7 6 5.7448 4.5377 0.0024 8 6 7.2700 4.6587 0.0017 9 6 7.6585 6.1147 0.0036 10 8 6.8000 6.9714 0.0048 11 7 8.9600 6.4650 0.0028 12 6 9.3376 7.8805 0.0041 13 1 8.6170 8.4490 -0.5838 14 6 9.3487 8.4039 1.4422 15 6 9.7102 9.8926 1.4365 16 7 10.9812 10.0679 0.7208 17 6 12.0271 10.7287 1.3078 18 1 13.0420 10.4978 1.0192 19 6 11.7831 11.6953 2.2737 20 7 12.7361 12.0430 3.1122 21 14 10.1021 12.5025 2.3834 22 1 9.2759 11.7905 3.3915 23 1 10.2603 13.9227 2.7871 24 1 9.4335 12.4357 1.0592 25 6 11.1086 9.5213 -0.6371 26 6 10.7314 8.0368 -0.6083 27 1 11.4566 7.4887 -0.0068 28 8 10.7279 7.5197 -1.9404 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.8340 0.9766 -0.8892 35 1 3.8332 0.9769 0.8908 36 1 3.4227 3.4223 -0.8888 37 1 3.4221 3.4218 0.8912 38 1 5.7533 2.5756 0.8909 39 1 5.7531 2.5763 -0.8890 40 1 5.3419 5.0220 -0.8873 41 1 5.3420 5.0206 0.8927 42 1 7.6732 4.1743 0.8911 43 1 7.6724 4.1760 -0.8889 44 1 9.6466 5.7797 0.0015 45 1 8.3618 8.2709 1.8854 46 1 10.0869 7.8524 2.0243 47 1 8.9259 10.4572 0.9323 48 1 9.8165 10.2466 2.4620 49 1 12.5655 12.7182 3.7875 50 1 10.4383 10.0556 -1.3104 51 1 12.1369 9.6326 -0.9809 52 1 11.5811 7.5866 -2.3906 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100135843.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:47 Heat of formation + Delta-G solvation = -135.802658 kcal Electronic energy + Delta-G solvation = -27980.092473 eV Core-core repulsion = 23979.467509 eV Total energy + Delta-G solvation = -4000.624963 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.92827 -38.57940 -38.21169 -35.84506 -35.66027 -34.38135 -32.58195 -32.04058 -30.96315 -30.13254 -29.18714 -26.84006 -24.96637 -23.22922 -22.82419 -22.75351 -21.77650 -21.21536 -20.22434 -19.66902 -17.35010 -17.05904 -16.86619 -16.77345 -16.54586 -16.16669 -15.95744 -15.03177 -14.92593 -14.86055 -14.52389 -14.12814 -13.91127 -13.77440 -13.34942 -13.14093 -12.96318 -12.82713 -12.73523 -12.49077 -12.31761 -12.24016 -12.03375 -11.86458 -11.60425 -11.56020 -11.35791 -11.26478 -11.19019 -11.15995 -11.01497 -10.78872 -10.20251 -10.16496 -9.99412 -9.99354 -9.88624 -9.57846 -9.53066 -8.78906 -8.68003 -7.08699 -6.01523 -3.39709 2.79798 3.17437 3.31106 3.37086 3.47515 3.50829 4.27439 4.48331 4.54160 4.54853 4.61226 4.65750 4.76648 4.88010 4.88972 4.90563 4.92460 5.00748 5.13776 5.18098 5.20184 5.30917 5.34332 5.39557 5.39993 5.45552 5.52058 5.55737 5.59609 5.67175 5.69785 5.74806 5.79931 5.88231 6.03661 6.04512 6.17217 6.23948 6.29231 6.38815 6.50672 6.56211 6.72450 6.79421 6.82210 7.67413 7.75662 7.89830 8.24316 8.39972 8.83893 9.63630 9.98853 11.13781 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.023482 B = 0.001791 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.129217 B =15628.235516 C =16411.725304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.392 6.392 4 C 0.062 3.938 5 C -0.119 4.119 6 C -0.116 4.116 7 C -0.103 4.103 8 C -0.140 4.140 9 C 0.510 3.490 10 O -0.544 6.544 11 N -0.718 5.718 12 C 0.161 3.839 13 H 0.088 0.912 14 C -0.140 4.140 15 C 0.126 3.874 16 N -0.602 5.602 17 C -0.267 4.267 18 H 0.087 0.913 19 C 0.027 3.973 20 N -0.906 5.906 21 Si 0.881 3.119 22 H -0.287 1.287 23 H -0.301 1.301 24 H -0.268 1.268 25 C 0.124 3.876 26 C 0.080 3.920 27 H 0.061 0.939 28 O -0.570 6.570 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.397 0.603 45 H 0.067 0.933 46 H 0.068 0.932 47 H 0.032 0.968 48 H 0.077 0.923 49 H 0.264 0.736 50 H 0.033 0.967 51 H 0.070 0.930 52 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.613 -24.563 -7.525 29.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.311 6.311 4 C -0.014 4.014 5 C -0.157 4.157 6 C -0.154 4.154 7 C -0.141 4.141 8 C -0.180 4.180 9 C 0.296 3.704 10 O -0.422 6.422 11 N -0.368 5.368 12 C 0.057 3.943 13 H 0.106 0.894 14 C -0.181 4.181 15 C 0.000 4.000 16 N -0.327 5.327 17 C -0.395 4.395 18 H 0.104 0.896 19 C -0.172 4.172 20 N -0.548 5.548 21 Si 0.711 3.289 22 H -0.215 1.215 23 H -0.230 1.230 24 H -0.193 1.193 25 C -0.003 4.003 26 C 0.019 3.981 27 H 0.079 0.921 28 O -0.374 6.374 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.231 0.769 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.049 0.951 48 H 0.095 0.905 49 H 0.074 0.926 50 H 0.051 0.949 51 H 0.088 0.912 52 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -15.902 -23.781 -7.254 29.513 hybrid contribution 0.340 0.051 0.098 0.357 sum -15.562 -23.730 -7.156 29.266 Atomic orbital electron populations 1.21752 0.93735 1.02229 1.03230 1.22452 0.95659 0.83891 0.99971 1.87895 1.21440 1.26363 1.95424 1.22544 0.80996 0.97871 1.00012 1.21521 0.95829 0.94608 1.03720 1.21519 0.94636 0.97010 1.02224 1.21307 0.93415 0.95429 1.03940 1.21677 0.98402 0.93743 1.04178 1.20670 0.82523 0.91373 0.75848 1.90703 1.49465 1.52354 1.49653 1.46082 1.07207 1.08657 1.74839 1.20919 0.95273 0.81278 0.96809 0.89413 1.22422 1.01536 0.99081 0.95022 1.21382 0.88135 0.92757 0.97704 1.44312 1.12155 1.64953 1.11263 1.18893 0.86924 1.14765 1.18896 0.89550 1.25249 0.97010 0.97493 0.97473 1.69822 1.33393 1.33413 1.18182 0.86981 0.85149 0.78445 0.78311 1.21493 1.22963 1.19307 1.21552 1.00287 0.90685 0.87822 1.22727 0.96050 0.96714 0.82626 0.92131 1.86474 1.37963 1.84752 1.28242 0.91802 0.91820 0.91123 0.93493 0.93484 0.93423 0.93413 0.90968 0.90938 0.91730 0.91744 0.91038 0.90994 0.89098 0.89068 0.76903 0.91486 0.91353 0.95055 0.90461 0.92638 0.94865 0.91196 0.77755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 10.28 37.16 0.38 -0.46 16 2 C 0.06 0.38 6.66 37.16 0.25 0.62 16 3 O -0.39 -3.65 10.34 -35.23 -0.36 -4.02 16 4 C 0.06 0.47 5.94 37.16 0.22 0.69 16 5 C -0.12 -0.94 5.58 -26.73 -0.15 -1.09 16 6 C -0.12 -0.82 5.21 -26.74 -0.14 -0.96 16 7 C -0.10 -0.98 4.50 -26.73 -0.12 -1.10 16 8 C -0.14 -1.30 5.70 -27.88 -0.16 -1.46 16 9 C 0.51 7.17 7.79 -10.98 -0.09 7.08 16 10 O -0.54 -9.98 15.64 5.55 0.09 -9.89 16 11 N -0.72 -9.80 4.92 -53.76 -0.26 -10.07 16 12 C 0.16 2.71 2.12 -67.89 -0.14 2.57 16 13 H 0.09 1.70 7.57 -51.93 -0.39 1.31 16 14 C -0.14 -2.58 5.65 -26.61 -0.15 -2.73 16 15 C 0.13 2.78 4.19 -3.71 -0.02 2.77 16 16 N -0.60 -13.95 2.77 -172.32 -0.48 -14.43 16 17 C -0.27 -7.26 10.04 -15.06 -0.15 -7.42 16 18 H 0.09 2.48 8.06 -52.48 -0.42 2.06 16 19 C 0.03 0.78 5.24 -17.43 -0.09 0.69 16 20 N -0.91 -27.32 13.97 55.49 0.78 -26.55 16 21 Si 0.88 22.38 24.35 -169.99 -4.14 18.24 16 22 H -0.29 -7.09 6.70 56.52 0.38 -6.72 16 23 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 24 H -0.27 -6.75 6.45 56.52 0.36 -6.38 16 25 C 0.12 2.34 6.14 -3.71 -0.02 2.32 16 26 C 0.08 1.26 3.14 -26.61 -0.08 1.18 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 28 O -0.57 -7.83 13.16 -35.23 -0.46 -8.29 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.26 8.14 -51.92 -0.42 -0.16 16 32 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 34 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.78 8.10 -51.92 -0.42 0.36 16 41 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 42 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.40 4.34 8.60 -40.82 -0.35 3.99 16 45 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 46 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 47 H 0.03 0.71 6.98 -51.93 -0.36 0.34 16 48 H 0.08 1.85 4.50 -51.93 -0.23 1.62 16 49 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 50 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 51 H 0.07 1.26 7.93 -51.93 -0.41 0.84 16 52 H 0.38 3.61 9.08 45.56 0.41 4.02 16 LS Contribution 409.27 15.07 6.17 6.17 Total: -1.00 -33.93 409.27 -8.13 -42.06 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -8.98 Total: 4.09 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -0.46 Total: 2.69 kcal Atomic # 7 Polarization: -51.07 SS G_CDS: 0.03 Total: -51.04 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.74 Total: -22.20 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.14 Total: 18.24 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.93 -8.13 -42.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100135843.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.744 kcal (2) G-P(sol) polarization free energy of solvation -33.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds