Wall clock time and date at job start Tue Mar 31 2020 04:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42905 * 109.47307 * 2 1 4 4 C 1.42898 * 114.00073 * 180.02562 * 3 2 1 5 5 C 1.52992 * 109.47048 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.47100 * 179.97438 * 5 4 3 7 7 C 1.53006 * 109.46952 * 179.97438 * 6 5 4 8 8 C 1.53003 * 109.46952 * 179.97438 * 7 6 5 9 9 C 1.50695 * 109.47252 * 179.97438 * 8 7 6 10 10 O 1.21287 * 119.99790 * 0.02562 * 9 8 7 11 11 N 1.34770 * 120.00020 * 179.97438 * 9 8 7 12 12 C 1.46505 * 120.00181 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.45359 * 35.00416 * 12 11 9 14 14 C 1.53038 * 109.46147 * 275.03412 * 12 11 9 15 15 C 1.53166 * 109.32353 * 301.35307 * 14 12 11 16 16 N 1.46923 * 108.77251 * 305.35399 * 15 14 12 17 17 C 1.36929 * 120.63412 * 233.59121 * 16 15 14 18 18 H 1.08001 * 119.99986 * 27.69751 * 17 16 15 19 19 C 1.38815 * 120.00022 * 207.69556 * 17 16 15 20 20 N 1.31620 * 120.00007 * 17.36061 * 19 17 16 21 21 Si 1.86801 * 120.00125 * 197.35375 * 19 17 16 22 22 H 1.48501 * 109.46791 * 89.99834 * 21 19 17 23 23 H 1.48493 * 109.47239 * 210.00409 * 21 19 17 24 24 H 1.48502 * 109.46951 * 330.00488 * 21 19 17 25 25 C 1.46930 * 118.73340 * 53.61234 * 16 15 14 26 26 C 1.53040 * 109.46267 * 154.97305 * 12 11 9 27 27 H 1.08997 * 109.49791 * 178.60545 * 26 12 11 28 28 O 1.42900 * 109.49881 * 298.67632 * 26 12 11 29 29 H 1.08997 * 109.47305 * 59.99703 * 1 2 3 30 30 H 1.08992 * 109.47550 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46912 * 300.00222 * 1 2 3 32 32 H 1.08997 * 109.47305 * 120.00297 * 2 1 3 33 33 H 1.09005 * 109.46883 * 240.00314 * 2 1 3 34 34 H 1.09000 * 109.46789 * 299.99758 * 4 3 2 35 35 H 1.08997 * 109.47165 * 60.00080 * 4 3 2 36 36 H 1.08998 * 109.47629 * 299.99916 * 5 4 3 37 37 H 1.09006 * 109.47198 * 60.00144 * 5 4 3 38 38 H 1.09000 * 109.46987 * 300.00012 * 6 5 4 39 39 H 1.08997 * 109.46915 * 60.00302 * 6 5 4 40 40 H 1.08991 * 109.47078 * 299.99968 * 7 6 5 41 41 H 1.08997 * 109.47054 * 60.00399 * 7 6 5 42 42 H 1.08998 * 109.47035 * 300.00565 * 8 7 6 43 43 H 1.09003 * 109.46756 * 59.99624 * 8 7 6 44 44 H 0.97001 * 120.00480 * 0.02562 * 11 9 8 45 45 H 1.08993 * 109.49773 * 61.29316 * 14 12 11 46 46 H 1.09003 * 109.49679 * 181.38956 * 14 12 11 47 47 H 1.09002 * 109.58509 * 185.56895 * 15 14 12 48 48 H 1.08997 * 109.58674 * 65.14729 * 15 14 12 49 49 H 0.96997 * 120.00336 * 179.97438 * 20 19 17 50 50 H 1.09000 * 109.58566 * 186.60843 * 25 16 15 51 51 H 1.09002 * 109.70474 * 66.24820 * 25 16 15 52 52 H 0.96703 * 113.99829 * 179.97438 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9383 -0.0012 6 6 5.3506 3.0591 -0.0012 7 6 5.7451 4.5374 -0.0024 8 6 7.2704 4.6582 -0.0017 9 6 7.6590 6.1142 -0.0036 10 8 6.8005 6.9710 -0.0048 11 7 8.9604 6.4643 -0.0028 12 6 9.3383 7.8798 -0.0052 13 1 8.6178 8.4488 0.5825 14 6 9.3490 8.4022 -1.4436 15 6 10.3368 7.5780 -2.2748 16 7 11.6486 7.6047 -1.6137 17 6 12.7683 7.9915 -2.3004 18 1 12.6828 8.6773 -3.1303 19 6 14.0134 7.5023 -1.9298 20 7 14.1000 6.4317 -1.1691 21 14 15.5660 8.3632 -2.5108 22 1 15.9557 9.4012 -1.5228 23 1 16.6621 7.3704 -2.6443 24 1 15.3143 9.0027 -3.8272 25 6 11.7361 7.2079 -0.2017 26 6 10.7323 8.0364 0.6064 27 1 11.0243 9.0863 0.5824 28 8 10.7139 7.5773 1.9596 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 3.8339 0.9765 0.8892 35 1 3.8333 0.9767 -0.8908 36 1 3.4223 3.4216 -0.8911 37 1 3.4229 3.4221 0.8889 38 1 5.7533 2.5759 0.8890 39 1 5.7534 2.5752 -0.8909 40 1 5.3424 5.0201 -0.8928 41 1 5.3423 5.0217 0.8872 42 1 7.6727 4.1755 0.8889 43 1 7.6735 4.1737 -0.8910 44 1 9.6470 5.7791 -0.0015 45 1 8.3504 8.3119 -1.8709 46 1 9.6540 9.4487 -1.4483 47 1 10.4219 8.0077 -3.2730 48 1 9.9845 6.5491 -2.3465 49 1 14.9700 6.0895 -0.9104 50 1 12.7445 7.3935 0.1682 51 1 11.4995 6.1486 -0.1022 52 1 11.5666 7.6470 2.4102 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100135844.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:49 Heat of formation + Delta-G solvation = -140.730440 kcal Electronic energy + Delta-G solvation = -28335.297845 eV Core-core repulsion = 24334.459197 eV Total energy + Delta-G solvation = -4000.838648 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.82356 -38.49060 -37.93105 -35.69256 -35.29199 -34.03071 -32.47992 -31.91193 -30.75911 -29.57844 -28.88039 -26.59785 -25.25268 -23.16910 -22.85125 -22.23717 -21.75410 -21.16160 -20.20130 -18.69520 -17.16235 -16.96637 -16.77303 -16.67196 -16.49885 -15.87732 -15.29138 -15.00530 -14.87659 -14.72921 -14.12086 -14.02552 -13.75983 -13.62490 -13.37764 -13.05420 -12.93459 -12.71766 -12.52381 -12.24939 -12.20448 -11.85053 -11.79548 -11.66634 -11.48578 -11.24717 -11.13633 -11.08415 -11.04054 -11.01712 -10.86776 -10.64845 -10.44377 -10.22238 -10.02300 -9.91477 -9.67762 -9.45097 -9.32118 -8.66421 -8.51960 -6.81582 -5.92125 -3.35257 3.00732 3.28782 3.30120 3.38054 3.38868 3.61142 4.37730 4.58874 4.63578 4.66085 4.69972 4.81833 4.87021 4.98364 5.02254 5.06415 5.11752 5.22960 5.27589 5.35407 5.39141 5.43655 5.49124 5.51707 5.55226 5.68089 5.71054 5.72974 5.76562 5.81938 5.83761 5.92660 5.98862 6.03191 6.18615 6.24911 6.31097 6.45101 6.45801 6.70108 6.80020 6.89866 6.99149 7.03956 7.38481 7.68210 7.94906 8.08131 8.31521 8.61859 9.06659 9.69485 10.25216 11.15980 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.022693 B = 0.001843 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.591423 B =15188.321618 C =15594.031612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.392 6.392 4 C 0.062 3.938 5 C -0.118 4.118 6 C -0.117 4.117 7 C -0.100 4.100 8 C -0.142 4.142 9 C 0.511 3.489 10 O -0.555 6.555 11 N -0.707 5.707 12 C 0.165 3.835 13 H 0.077 0.923 14 C -0.144 4.144 15 C 0.146 3.854 16 N -0.588 5.588 17 C -0.255 4.255 18 H 0.069 0.931 19 C 0.003 3.997 20 N -0.903 5.903 21 Si 0.904 3.096 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.278 1.278 25 C 0.146 3.854 26 C 0.066 3.934 27 H 0.061 0.939 28 O -0.573 6.573 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.404 0.596 45 H 0.064 0.936 46 H 0.069 0.931 47 H 0.056 0.944 48 H 0.020 0.980 49 H 0.255 0.745 50 H 0.092 0.908 51 H 0.024 0.976 52 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.464 -10.100 4.235 20.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.312 6.312 4 C -0.015 4.015 5 C -0.156 4.156 6 C -0.155 4.155 7 C -0.138 4.138 8 C -0.182 4.182 9 C 0.298 3.702 10 O -0.434 6.434 11 N -0.358 5.358 12 C 0.060 3.940 13 H 0.095 0.905 14 C -0.185 4.185 15 C 0.020 3.980 16 N -0.312 5.312 17 C -0.384 4.384 18 H 0.086 0.914 19 C -0.195 4.195 20 N -0.547 5.547 21 Si 0.734 3.266 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.204 1.204 25 C 0.020 3.980 26 C 0.006 3.994 27 H 0.078 0.922 28 O -0.378 6.378 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.240 0.760 45 H 0.082 0.918 46 H 0.088 0.912 47 H 0.075 0.925 48 H 0.038 0.962 49 H 0.065 0.935 50 H 0.110 0.890 51 H 0.042 0.958 52 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -18.654 -9.523 4.129 21.348 hybrid contribution 2.124 -0.127 -0.141 2.133 sum -16.530 -9.650 3.988 19.551 Atomic orbital electron populations 1.21745 0.93786 1.02194 1.03186 1.22448 0.95606 0.83950 0.99997 1.87888 1.21523 1.26315 1.95435 1.22553 0.80887 0.97951 1.00074 1.21517 0.95929 0.94521 1.03602 1.21534 0.94481 0.97160 1.02332 1.21282 0.93546 0.95280 1.03712 1.21674 0.98151 0.93992 1.04353 1.20608 0.82566 0.91272 0.75801 1.90654 1.49647 1.52385 1.50747 1.46037 1.07189 1.08823 1.73734 1.20777 0.95066 0.81921 0.96238 0.90502 1.22390 1.00184 1.00774 0.95103 1.20914 0.85934 0.96292 0.94904 1.43962 1.02837 1.78341 1.06035 1.19231 0.84706 1.20524 1.13987 0.91370 1.25048 0.98327 0.95922 1.00249 1.70014 1.23553 1.20941 1.40220 0.86262 0.82931 0.78837 0.78590 1.21397 1.21718 1.20353 1.21386 0.98235 0.94460 0.83945 1.22942 0.96068 0.98748 0.81690 0.92155 1.86414 1.37243 1.88268 1.25826 0.91827 0.91153 0.91850 0.93496 0.93477 0.93399 0.93369 0.90995 0.91040 0.91723 0.91666 0.91106 0.91182 0.89102 0.89013 0.76019 0.91753 0.91248 0.92518 0.96193 0.93520 0.89000 0.95763 0.77790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.28 37.16 0.38 -0.54 16 2 C 0.06 0.41 6.66 37.16 0.25 0.66 16 3 O -0.39 -3.94 10.34 -35.23 -0.36 -4.30 16 4 C 0.06 0.52 5.94 37.15 0.22 0.74 16 5 C -0.12 -1.05 5.58 -26.73 -0.15 -1.20 16 6 C -0.12 -1.00 5.21 -26.73 -0.14 -1.14 16 7 C -0.10 -1.10 4.50 -26.73 -0.12 -1.22 16 8 C -0.14 -1.65 5.70 -27.88 -0.16 -1.81 16 9 C 0.51 8.17 7.79 -10.99 -0.09 8.08 16 10 O -0.56 -10.63 15.64 5.55 0.09 -10.54 16 11 N -0.71 -11.72 4.15 -53.76 -0.22 -11.95 16 12 C 0.16 2.96 2.47 -67.89 -0.17 2.80 16 13 H 0.08 1.46 7.58 -51.93 -0.39 1.07 16 14 C -0.14 -2.59 5.77 -26.63 -0.15 -2.75 16 15 C 0.15 2.95 6.26 -3.73 -0.02 2.92 16 16 N -0.59 -13.73 2.99 -172.33 -0.52 -14.25 16 17 C -0.26 -6.64 9.59 -15.06 -0.14 -6.78 16 18 H 0.07 1.76 7.89 -52.49 -0.41 1.35 16 19 C 0.00 0.09 4.91 -17.43 -0.09 0.00 16 20 N -0.90 -24.63 11.19 55.49 0.62 -24.01 16 21 Si 0.90 20.78 29.59 -169.99 -5.03 15.75 16 22 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 25 C 0.15 3.18 4.64 -3.71 -0.02 3.16 16 26 C 0.07 1.22 3.36 -26.61 -0.09 1.13 16 27 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 28 O -0.57 -9.72 13.21 -35.23 -0.47 -10.19 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 41 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 42 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 44 H 0.40 6.61 6.87 -40.82 -0.28 6.33 16 45 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 47 H 0.06 1.14 7.93 -51.93 -0.41 0.72 16 48 H 0.02 0.41 7.74 -51.93 -0.40 0.01 16 49 H 0.25 6.76 8.31 -40.82 -0.34 6.42 16 50 H 0.09 2.24 6.04 -51.93 -0.31 1.92 16 51 H 0.02 0.55 6.65 -51.93 -0.35 0.20 16 52 H 0.38 5.09 9.08 45.56 0.41 5.50 16 LS Contribution 411.65 15.07 6.20 6.20 Total: -1.00 -30.85 411.65 -9.06 -39.91 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -8.89 Total: 9.30 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -0.48 Total: 4.06 kcal Atomic # 7 Polarization: -50.09 SS G_CDS: -0.12 Total: -50.20 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.74 Total: -25.03 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.03 Total: 15.75 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -30.85 -9.06 -39.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100135844.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.820 kcal (2) G-P(sol) polarization free energy of solvation -30.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds