Wall clock time and date at job start Tue Mar 31 2020 04:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42900 * 109.47107 * 2 1 4 4 C 1.42901 * 114.00096 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.46834 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.46791 * 180.02562 * 5 4 3 7 7 C 1.53003 * 109.47372 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.47372 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.47051 * 179.97438 * 8 7 6 10 10 O 1.21282 * 119.99855 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00137 * 179.97438 * 9 8 7 12 12 C 1.46494 * 120.00174 * 180.27350 * 11 9 8 13 13 H 1.08998 * 109.46118 * 34.70419 * 12 11 9 14 14 C 1.53038 * 109.46289 * 274.72864 * 12 11 9 15 15 C 1.53193 * 109.31518 * 178.61567 * 14 12 11 16 16 N 1.46933 * 108.77704 * 54.63069 * 15 14 12 17 17 C 1.36934 * 120.62739 * 126.41417 * 16 15 14 18 18 H 1.08000 * 119.99711 * 207.67385 * 17 16 15 19 19 C 1.38810 * 120.00264 * 27.67587 * 17 16 15 20 20 N 1.31616 * 119.99969 * 17.35675 * 19 17 16 21 21 Si 1.86803 * 120.00019 * 197.36573 * 19 17 16 22 22 H 1.48499 * 109.47033 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46984 * 119.99490 * 21 19 17 24 24 H 1.48490 * 109.47036 * 239.99676 * 21 19 17 25 25 C 1.46924 * 118.73682 * 306.39699 * 16 15 14 26 26 C 1.53048 * 109.45882 * 154.65715 * 12 11 9 27 27 H 1.09002 * 109.49372 * 61.44064 * 26 12 11 28 28 O 1.42899 * 109.49686 * 301.33862 * 26 12 11 29 29 H 1.08999 * 109.47017 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47566 * 299.99828 * 1 2 3 31 31 H 1.08995 * 109.47148 * 59.99947 * 1 2 3 32 32 H 1.08994 * 109.47366 * 239.99568 * 2 1 3 33 33 H 1.09004 * 109.47078 * 119.99789 * 2 1 3 34 34 H 1.08999 * 109.46679 * 60.00639 * 4 3 2 35 35 H 1.08996 * 109.47474 * 299.99725 * 4 3 2 36 36 H 1.08998 * 109.47212 * 60.01209 * 5 4 3 37 37 H 1.09001 * 109.47759 * 300.00296 * 5 4 3 38 38 H 1.08999 * 109.47384 * 60.00058 * 6 5 4 39 39 H 1.09001 * 109.47398 * 300.00232 * 6 5 4 40 40 H 1.09006 * 109.46936 * 59.99918 * 7 6 5 41 41 H 1.09001 * 109.46805 * 300.00297 * 7 6 5 42 42 H 1.08991 * 109.46777 * 59.99853 * 8 7 6 43 43 H 1.08996 * 109.46719 * 299.99710 * 8 7 6 44 44 H 0.97006 * 119.99486 * 0.02562 * 11 9 8 45 45 H 1.09005 * 109.49416 * 298.56209 * 14 12 11 46 46 H 1.08992 * 109.49789 * 58.62728 * 14 12 11 47 47 H 1.08995 * 109.59027 * 174.42242 * 15 14 12 48 48 H 1.09005 * 109.58329 * 294.70254 * 15 14 12 49 49 H 0.96999 * 119.99847 * 179.97438 * 20 19 17 50 50 H 1.09004 * 109.58272 * 173.39619 * 25 16 15 51 51 H 1.08997 * 109.58794 * 293.81678 * 25 16 15 52 52 H 0.96697 * 113.99452 * 180.02562 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8252 2.9384 -0.0001 6 6 5.3505 3.0593 -0.0001 7 6 5.7450 4.5375 -0.0002 8 6 7.2703 4.6584 0.0004 9 6 7.6588 6.1144 -0.0003 10 8 6.8003 6.9711 -0.0007 11 7 8.9603 6.4646 0.0007 12 6 9.3380 7.8800 0.0060 13 1 8.6155 8.4464 0.5936 14 6 9.3540 8.4090 -1.4299 15 6 9.7155 9.8976 -1.4176 16 7 10.9842 10.0702 -0.6967 17 6 12.0321 10.7331 -1.2776 18 1 13.0462 10.4957 -0.9920 19 6 11.7910 11.7102 -2.2336 20 7 10.5925 12.2433 -2.3420 21 14 13.1674 12.2683 -3.3666 22 1 14.4084 11.5192 -3.0440 23 1 12.7843 12.0063 -4.7772 24 1 13.4035 13.7223 -3.1796 25 6 11.1068 9.5183 0.6595 26 6 10.7297 8.0339 0.6238 27 1 11.4570 7.4882 0.0226 28 8 10.7215 7.5118 1.9540 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8339 0.9766 -0.8892 35 1 3.8333 0.9768 0.8908 36 1 3.4222 3.4224 0.8895 37 1 3.4229 3.4215 -0.8905 38 1 5.7533 2.5753 -0.8899 39 1 5.7533 2.5761 0.8901 40 1 5.3422 5.0211 0.8898 41 1 5.3422 5.0210 -0.8902 42 1 7.6733 4.1747 -0.8892 43 1 7.6726 4.1750 0.8907 44 1 9.6469 5.7793 0.0014 45 1 10.0943 7.8596 -2.0117 46 1 8.3689 8.2770 -1.8772 47 1 9.8253 10.2555 -2.4412 48 1 8.9283 10.4606 -0.9161 49 1 10.4241 12.9264 -3.0098 50 1 12.1345 9.6261 1.0062 51 1 10.4343 10.0501 1.3325 52 1 11.5731 7.5771 2.4073 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100135846.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:52 Heat of formation + Delta-G solvation = -141.770563 kcal Electronic energy + Delta-G solvation = -27872.680652 eV Core-core repulsion = 23871.796900 eV Total energy + Delta-G solvation = -4000.883751 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.77314 -38.53384 -37.99903 -35.78064 -35.40570 -34.24009 -32.52595 -31.90889 -30.85253 -29.88940 -28.57010 -26.73327 -24.98552 -23.20429 -22.86012 -22.28849 -21.65006 -21.14491 -20.05474 -19.36949 -17.28054 -17.00065 -16.82749 -16.65949 -16.42858 -15.95968 -15.80851 -14.91613 -14.85077 -14.80186 -14.12618 -13.91091 -13.84321 -13.56573 -13.24467 -13.09953 -12.96097 -12.77899 -12.63222 -12.29525 -12.23220 -12.06952 -11.79656 -11.58230 -11.54120 -11.32596 -11.20603 -11.13631 -11.08107 -10.89905 -10.73081 -10.66255 -10.31545 -10.25213 -9.96221 -9.95612 -9.77941 -9.69542 -9.35495 -8.71627 -8.44648 -6.78133 -5.85707 -3.29773 2.91732 3.23024 3.33150 3.41086 3.43034 3.48576 4.36394 4.51154 4.58614 4.59455 4.64663 4.72663 4.81110 4.93750 4.93847 4.97774 5.04609 5.21891 5.25263 5.30010 5.31840 5.38379 5.44407 5.48159 5.48628 5.56157 5.58415 5.66183 5.69876 5.74942 5.78041 5.93197 5.97885 6.10365 6.13202 6.23486 6.34756 6.48191 6.54731 6.67131 6.77063 6.85470 6.91051 7.28898 7.60683 7.72395 7.80507 7.91250 8.36759 8.52652 9.12348 9.74869 10.30786 11.22876 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.025970 B = 0.001683 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.888440 B =16631.442187 C =17282.585372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.391 6.391 4 C 0.062 3.938 5 C -0.119 4.119 6 C -0.116 4.116 7 C -0.103 4.103 8 C -0.140 4.140 9 C 0.508 3.492 10 O -0.543 6.543 11 N -0.719 5.719 12 C 0.162 3.838 13 H 0.086 0.914 14 C -0.146 4.146 15 C 0.171 3.829 16 N -0.588 5.588 17 C -0.260 4.260 18 H 0.067 0.933 19 C 0.005 3.995 20 N -0.899 5.899 21 Si 0.904 3.096 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.289 1.289 25 C 0.121 3.879 26 C 0.080 3.920 27 H 0.055 0.945 28 O -0.571 6.571 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.395 0.605 45 H 0.057 0.943 46 H 0.062 0.938 47 H 0.093 0.907 48 H 0.024 0.976 49 H 0.255 0.745 50 H 0.060 0.940 51 H 0.029 0.971 52 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.991 -24.430 5.226 26.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.311 6.311 4 C -0.014 4.014 5 C -0.157 4.157 6 C -0.154 4.154 7 C -0.141 4.141 8 C -0.180 4.180 9 C 0.294 3.706 10 O -0.421 6.421 11 N -0.368 5.368 12 C 0.058 3.942 13 H 0.104 0.896 14 C -0.186 4.186 15 C 0.045 3.955 16 N -0.312 5.312 17 C -0.389 4.389 18 H 0.085 0.915 19 C -0.194 4.194 20 N -0.542 5.542 21 Si 0.733 3.267 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.216 1.216 25 C -0.007 4.007 26 C 0.019 3.981 27 H 0.073 0.927 28 O -0.376 6.376 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.228 0.772 45 H 0.076 0.924 46 H 0.080 0.920 47 H 0.111 0.889 48 H 0.042 0.958 49 H 0.065 0.935 50 H 0.078 0.922 51 H 0.047 0.953 52 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -11.406 -23.622 4.967 26.698 hybrid contribution 1.865 -0.136 -0.484 1.931 sum -9.541 -23.759 4.483 25.992 Atomic orbital electron populations 1.21748 0.93743 1.02211 1.03240 1.22447 0.95656 0.83920 0.99954 1.87897 1.21457 1.26330 1.95421 1.22546 0.80972 0.97913 0.99988 1.21524 0.95855 0.94559 1.03745 1.21521 0.94605 0.97078 1.02168 1.21308 0.93475 0.95342 1.03970 1.21672 0.98351 0.93929 1.04041 1.20634 0.82621 0.91273 0.76032 1.90708 1.49442 1.52315 1.49609 1.46129 1.07078 1.08870 1.74752 1.20977 0.95016 0.80815 0.97391 0.89565 1.22589 1.00872 1.01046 0.94097 1.20829 0.86558 0.88575 0.99586 1.44047 1.12870 1.63973 1.10300 1.19205 0.86646 1.13731 1.19332 0.91486 1.25068 0.96744 0.96093 1.01489 1.70046 1.20995 1.27728 1.35451 0.86213 0.81520 0.78148 0.80799 1.20224 1.21460 1.21627 1.21530 0.99368 0.90583 0.89242 1.22778 0.96133 0.96899 0.82289 0.92657 1.86481 1.37862 1.84647 1.28574 0.91142 0.91815 0.91798 0.93500 0.93511 0.93430 0.93436 0.90948 0.90923 0.91764 0.91791 0.91028 0.90973 0.89216 0.89183 0.77170 0.92432 0.91974 0.88886 0.95828 0.93468 0.92198 0.95339 0.78047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 10.28 37.16 0.38 -0.49 16 2 C 0.06 0.39 6.66 37.16 0.25 0.64 16 3 O -0.39 -3.77 10.34 -35.23 -0.36 -4.13 16 4 C 0.06 0.49 5.94 37.16 0.22 0.71 16 5 C -0.12 -0.99 5.58 -26.73 -0.15 -1.14 16 6 C -0.12 -0.87 5.21 -26.73 -0.14 -1.01 16 7 C -0.10 -1.05 4.50 -26.73 -0.12 -1.17 16 8 C -0.14 -1.41 5.70 -27.88 -0.16 -1.56 16 9 C 0.51 7.66 7.80 -10.99 -0.09 7.58 16 10 O -0.54 -10.58 15.64 5.56 0.09 -10.50 16 11 N -0.72 -10.59 4.92 -53.77 -0.26 -10.86 16 12 C 0.16 2.94 2.12 -67.89 -0.14 2.80 16 13 H 0.09 1.83 7.57 -51.93 -0.39 1.43 16 14 C -0.15 -2.89 5.65 -26.61 -0.15 -3.04 16 15 C 0.17 4.11 5.31 -3.71 -0.02 4.09 16 16 N -0.59 -14.42 3.00 -172.32 -0.52 -14.94 16 17 C -0.26 -6.95 9.58 -15.06 -0.14 -7.09 16 18 H 0.07 1.74 7.89 -52.49 -0.41 1.33 16 19 C 0.01 0.14 4.91 -17.43 -0.09 0.06 16 20 N -0.90 -25.89 11.19 55.49 0.62 -25.27 16 21 Si 0.90 21.24 29.59 -169.99 -5.03 16.21 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 C 0.12 2.46 6.14 -3.71 -0.02 2.43 16 26 C 0.08 1.36 3.14 -26.61 -0.08 1.28 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 28 O -0.57 -8.51 13.16 -35.23 -0.46 -8.97 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.83 8.10 -51.93 -0.42 0.40 16 41 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 42 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.40 4.70 8.60 -40.82 -0.35 4.35 16 45 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 47 H 0.09 2.48 6.04 -51.93 -0.31 2.17 16 48 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 50 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 51 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 52 H 0.37 3.96 9.08 45.56 0.41 4.37 16 LS Contribution 415.87 15.07 6.27 6.27 Total: -1.00 -33.03 415.87 -9.17 -42.20 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -9.06 Total: 5.92 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -0.45 Total: 4.06 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: -0.16 Total: -51.07 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -0.74 Total: -23.60 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -33.03 -9.17 -42.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100135846.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.567 kcal (2) G-P(sol) polarization free energy of solvation -33.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds