Wall clock time and date at job start Tue Mar 31 2020 04:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42895 * 109.47272 * 2 1 4 4 C 1.42900 * 114.00251 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47223 * 180.02562 * 4 3 2 6 6 O 1.42901 * 109.47205 * 65.00088 * 5 4 3 7 7 C 1.42899 * 114.00028 * 179.97438 * 6 5 4 8 8 H 1.09004 * 109.47082 * 330.00148 * 7 6 5 9 9 C 1.53003 * 109.47164 * 90.00014 * 7 6 5 10 10 C 1.50694 * 109.47168 * 210.00070 * 7 6 5 11 11 O 1.21285 * 120.00395 * 351.02400 * 10 7 6 12 12 N 1.34776 * 120.00259 * 171.02493 * 10 7 6 13 13 C 1.48121 * 127.03313 * 4.44387 * 12 10 7 14 14 C 1.54594 * 103.42485 * 219.28613 * 13 12 10 15 15 H 1.09002 * 110.57362 * 81.16930 * 14 13 12 16 16 C 1.53002 * 110.99144 * 204.37046 * 14 13 12 17 17 N 1.46497 * 109.47179 * 288.65321 * 16 14 13 18 18 C 1.36933 * 120.00236 * 179.97438 * 17 16 14 19 19 H 1.08006 * 120.00022 * 0.02562 * 18 17 16 20 20 C 1.38817 * 120.00276 * 179.97438 * 18 17 16 21 21 N 1.31616 * 119.99770 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99733 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47528 * 60.00127 * 22 20 18 24 24 H 1.48503 * 109.46573 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47001 * 299.99903 * 22 20 18 26 26 C 1.54614 * 102.90986 * 322.86911 * 14 13 12 27 27 H 1.09008 * 110.32594 * 262.80092 * 26 14 13 28 28 C 1.53006 * 110.41213 * 140.63870 * 26 14 13 29 29 C 1.47478 * 127.03875 * 184.75991 * 12 10 7 30 30 H 1.09000 * 109.46602 * 299.99639 * 1 2 3 31 31 H 1.09000 * 109.47615 * 59.99595 * 1 2 3 32 32 H 1.08998 * 109.47220 * 179.97438 * 1 2 3 33 33 H 1.09008 * 109.46794 * 240.00650 * 2 1 3 34 34 H 1.08991 * 109.47338 * 120.00400 * 2 1 3 35 35 H 1.09005 * 109.46801 * 60.00145 * 4 3 2 36 36 H 1.08999 * 109.47401 * 300.00562 * 4 3 2 37 37 H 1.09002 * 109.47576 * 305.00007 * 5 4 3 38 38 H 1.09007 * 109.47188 * 184.99845 * 5 4 3 39 39 H 1.08997 * 109.47557 * 185.12844 * 9 7 6 40 40 H 1.09004 * 109.46842 * 305.13488 * 9 7 6 41 41 H 1.09001 * 109.46975 * 65.12695 * 9 7 6 42 42 H 1.09005 * 110.66052 * 337.76941 * 13 12 10 43 43 H 1.09003 * 110.66370 * 100.88312 * 13 12 10 44 44 H 1.09004 * 109.46769 * 48.65188 * 16 14 13 45 45 H 1.08994 * 109.47323 * 168.64983 * 16 14 13 46 46 H 0.97003 * 119.99913 * 0.02562 * 17 16 14 47 47 H 0.97003 * 119.99798 * 180.02562 * 21 20 18 48 48 H 1.09003 * 109.46962 * 302.86819 * 28 26 14 49 49 H 1.08999 * 109.47409 * 62.86861 * 28 26 14 50 50 H 1.09004 * 109.46729 * 182.87247 * 28 26 14 51 51 H 1.09000 * 109.91786 * 273.87794 * 29 12 10 52 52 H 1.09001 * 109.91489 * 35.15263 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9383 0.0001 6 8 3.3987 3.5446 1.2217 7 6 3.7205 4.9331 1.3249 8 1 4.6324 5.1374 0.7638 9 6 2.5721 5.7667 0.7527 10 6 3.9301 5.2939 2.7729 11 8 3.6585 4.4936 3.6428 12 7 4.4195 6.5059 3.1014 13 6 4.7160 7.6277 2.1808 14 6 6.0284 8.2183 2.7455 15 1 6.8860 7.6341 2.4119 16 6 6.1862 9.6862 2.3440 17 7 6.4842 9.7716 0.9122 18 6 6.6674 10.9939 0.3227 19 1 6.5927 11.8950 0.9133 20 6 6.9502 11.0747 -1.0340 21 7 7.0418 9.9766 -1.7537 22 14 7.2009 12.7422 -1.8379 23 1 8.3430 13.4369 -1.1914 24 1 7.4876 12.5566 -3.2832 25 1 5.9706 13.5584 -1.6787 26 6 5.8370 8.0861 4.2740 27 1 5.4799 9.0267 4.6937 28 6 7.1495 7.6715 4.9423 29 6 4.7755 6.9845 4.4502 30 1 -0.3632 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 3.8333 0.9767 -0.8909 36 1 3.8341 0.9763 0.8891 37 1 3.3492 3.4419 -0.8412 38 1 4.9083 3.0255 -0.0899 39 1 2.8547 6.8194 0.7475 40 1 2.3602 5.4422 -0.2661 41 1 1.6833 5.6321 1.3691 42 1 4.8655 7.2622 1.1648 43 1 3.9186 8.3703 2.2100 44 1 5.2608 10.2221 2.5552 45 1 7.0023 10.1326 2.9122 46 1 6.5509 8.9623 0.3816 47 1 7.2398 10.0331 -2.7016 48 1 7.5005 6.7368 4.5049 49 1 7.8977 8.4488 4.7871 50 1 6.9852 7.5334 6.0110 51 1 3.8940 7.3939 4.9436 52 1 5.1861 6.1641 5.0389 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107024975.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:35 Heat of formation + Delta-G solvation = -122.070275 kcal Electronic energy + Delta-G solvation = -28954.336369 eV Core-core repulsion = 24954.306887 eV Total energy + Delta-G solvation = -4000.029483 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.27381 -38.76085 -38.02707 -37.02248 -34.63832 -33.24678 -32.26670 -31.53095 -30.97639 -29.07057 -28.98433 -26.64488 -25.50448 -24.11815 -23.07510 -23.01180 -22.55843 -21.10671 -19.95399 -19.35989 -17.48367 -17.13690 -17.07918 -16.75780 -16.17009 -15.72996 -15.63729 -15.02076 -14.73389 -14.55635 -14.15713 -14.07803 -13.81891 -13.49579 -13.37156 -13.15887 -13.00652 -12.82793 -12.74020 -12.44402 -12.41278 -12.32350 -11.92986 -11.87619 -11.71950 -11.59499 -11.43717 -11.22485 -11.14919 -11.02083 -10.87914 -10.60024 -10.50647 -10.40152 -10.10115 -9.94079 -9.81240 -9.72048 -9.40557 -8.92971 -8.58898 -6.99000 -5.82488 -3.11213 2.67581 2.72472 3.40637 3.44694 3.45552 3.46021 3.73481 4.42501 4.51349 4.72363 4.73791 4.79580 4.81773 4.87532 4.92334 4.94829 5.02894 5.06085 5.10820 5.21491 5.24026 5.30054 5.42491 5.44644 5.52382 5.54528 5.54850 5.63218 5.65438 5.67706 5.70461 5.75738 5.85495 5.88202 5.89583 5.99244 6.09182 6.11943 6.13435 6.22015 6.31445 6.44665 6.66904 6.79128 6.94400 7.06313 7.59357 7.64769 8.24753 8.36333 9.47870 10.03968 10.38589 11.40259 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.011079 B = 0.002719 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.686812 B =10295.367493 C =12255.260613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.380 6.380 4 C 0.067 3.933 5 C 0.060 3.940 6 O -0.350 6.350 7 C 0.075 3.925 8 H 0.087 0.913 9 C -0.171 4.171 10 C 0.536 3.464 11 O -0.529 6.529 12 N -0.620 5.620 13 C 0.105 3.895 14 C -0.102 4.102 15 H 0.084 0.916 16 C 0.164 3.836 17 N -0.732 5.732 18 C -0.240 4.240 19 H 0.070 0.930 20 C -0.012 4.012 21 N -0.934 5.934 22 Si 0.907 3.093 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.100 4.100 27 H 0.088 0.912 28 C -0.141 4.141 29 C 0.113 3.887 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.045 0.955 34 H 0.047 0.953 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.023 0.977 45 H 0.024 0.976 46 H 0.383 0.617 47 H 0.256 0.744 48 H 0.054 0.946 49 H 0.062 0.938 50 H 0.054 0.946 51 H 0.064 0.936 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.321 -15.609 6.439 18.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.299 6.299 4 C -0.010 4.010 5 C -0.017 4.017 6 O -0.269 6.269 7 C 0.014 3.986 8 H 0.105 0.895 9 C -0.228 4.228 10 C 0.324 3.676 11 O -0.405 6.405 12 N -0.355 5.355 13 C -0.017 4.017 14 C -0.122 4.122 15 H 0.102 0.898 16 C 0.036 3.964 17 N -0.377 5.377 18 C -0.371 4.371 19 H 0.088 0.912 20 C -0.208 4.208 21 N -0.582 5.582 22 Si 0.738 3.262 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.120 4.120 27 H 0.106 0.894 28 C -0.198 4.198 29 C -0.009 4.009 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.103 0.897 43 H 0.098 0.902 44 H 0.040 0.960 45 H 0.042 0.958 46 H 0.216 0.784 47 H 0.065 0.935 48 H 0.073 0.927 49 H 0.081 0.919 50 H 0.073 0.927 51 H 0.083 0.917 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.731 -15.932 6.994 19.040 hybrid contribution 0.573 0.640 -1.005 1.322 sum -7.159 -15.292 5.989 17.915 Atomic orbital electron populations 1.21733 0.93770 1.02048 1.03296 1.22447 0.95721 0.84004 0.99838 1.87979 1.20528 1.26057 1.95364 1.22487 0.82193 0.95459 1.00848 1.22657 0.98540 0.92652 0.87874 1.88075 1.80233 1.20866 1.37681 1.21816 0.99457 0.83755 0.93586 0.89482 1.22257 0.98365 1.00237 1.01987 1.19964 0.76876 0.80151 0.90601 1.90694 1.50097 1.48985 1.50703 1.48782 1.64048 1.12892 1.09820 1.22713 0.97385 0.87751 0.93888 1.22516 0.97311 0.98832 0.93555 0.89763 1.20644 0.97689 0.90873 0.87196 1.42343 1.85756 1.06453 1.03122 1.19168 1.40490 0.85682 0.91806 0.91214 1.24725 1.02652 0.96977 0.96494 1.69634 1.55785 1.25969 1.06846 0.86274 0.77989 0.83544 0.78411 1.21284 1.21704 1.21251 1.22102 0.95416 0.98291 0.96162 0.89411 1.21827 0.96539 1.01656 0.99799 1.22089 0.97594 0.96890 0.84336 0.91682 0.91895 0.91259 0.93638 0.93431 0.91754 0.92328 0.91972 0.91441 0.90345 0.90978 0.91392 0.89689 0.90204 0.95952 0.95780 0.78362 0.93451 0.92671 0.91890 0.92717 0.91739 0.90723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.28 37.16 0.38 -0.82 16 2 C 0.06 0.51 6.66 37.16 0.25 0.76 16 3 O -0.38 -4.64 10.31 -40.08 -0.41 -5.05 16 4 C 0.07 0.69 6.32 37.16 0.23 0.92 16 5 C 0.06 0.67 6.13 37.16 0.23 0.90 16 6 O -0.35 -5.24 9.50 -59.62 -0.57 -5.80 16 7 C 0.08 1.04 2.40 -27.88 -0.07 0.98 16 8 H 0.09 1.09 7.27 -51.93 -0.38 0.71 16 9 C -0.17 -2.14 9.32 37.16 0.35 -1.79 16 10 C 0.54 8.63 7.24 -10.99 -0.08 8.55 16 11 O -0.53 -10.38 16.90 -14.19 -0.24 -10.62 16 12 N -0.62 -8.86 3.29 -169.99 -0.56 -9.42 16 13 C 0.10 1.48 5.00 -2.31 -0.01 1.47 16 14 C -0.10 -1.50 2.60 -88.93 -0.23 -1.73 16 15 H 0.08 1.31 7.86 -51.93 -0.41 0.90 16 16 C 0.16 2.97 5.59 -4.04 -0.02 2.95 16 17 N -0.73 -17.15 5.52 -59.91 -0.33 -17.48 16 18 C -0.24 -6.40 9.99 -15.06 -0.15 -6.55 16 19 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 20 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 21 N -0.93 -27.01 13.06 55.49 0.72 -26.28 16 22 Si 0.91 21.72 29.55 -169.99 -5.02 16.69 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 26 C -0.10 -1.21 3.17 -89.25 -0.28 -1.49 16 27 H 0.09 0.99 7.85 -51.92 -0.41 0.58 16 28 C -0.14 -1.55 8.90 37.16 0.33 -1.22 16 29 C 0.11 1.46 6.61 -2.99 -0.02 1.44 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.33 8.14 -51.92 -0.42 -0.09 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.66 7.78 -51.93 -0.40 0.25 16 38 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 39 H 0.08 0.95 6.19 -51.93 -0.32 0.63 16 40 H 0.07 0.82 7.78 -51.93 -0.40 0.42 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.08 1.22 6.45 -51.93 -0.33 0.88 16 43 H 0.08 1.12 7.95 -51.93 -0.41 0.71 16 44 H 0.02 0.41 8.00 -51.93 -0.42 -0.01 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.38 9.37 7.67 -40.82 -0.31 9.05 16 47 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 48 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 51 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 52 H 0.07 0.99 7.64 -51.93 -0.40 0.59 16 LS Contribution 417.65 15.07 6.29 6.29 Total: -1.00 -33.14 417.65 -8.96 -42.11 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -9.66 Total: 5.64 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 0.81 Total: 3.92 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: -0.17 Total: -53.18 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -1.22 Total: -21.47 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -33.14 -8.96 -42.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107024975.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.961 kcal (2) G-P(sol) polarization free energy of solvation -33.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds