Wall clock time and date at job start Tue Mar 31 2020 04:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42897 * 109.47271 * 2 1 4 4 C 1.42901 * 114.00182 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47066 * 180.02562 * 4 3 2 6 6 O 1.42900 * 109.47319 * 65.00044 * 5 4 3 7 7 C 1.42901 * 114.00155 * 179.97438 * 6 5 4 8 8 H 1.08999 * 109.46460 * 30.00528 * 7 6 5 9 9 C 1.52999 * 109.47161 * 270.00192 * 7 6 5 10 10 C 1.50697 * 109.46697 * 149.99833 * 7 6 5 11 11 O 1.21283 * 120.00521 * 4.73084 * 10 7 6 12 12 N 1.34784 * 119.99774 * 185.00190 * 10 7 6 13 13 C 1.48109 * 127.03387 * 179.43691 * 12 10 7 14 14 C 1.54601 * 103.42369 * 219.28519 * 13 12 10 15 15 H 1.09004 * 110.57290 * 81.16735 * 14 13 12 16 16 C 1.52994 * 110.98947 * 204.37340 * 14 13 12 17 17 N 1.46500 * 109.47111 * 288.65245 * 16 14 13 18 18 C 1.36945 * 119.99905 * 180.02562 * 17 16 14 19 19 H 1.07997 * 120.00076 * 359.97438 * 18 17 16 20 20 C 1.38816 * 119.99748 * 179.97438 * 18 17 16 21 21 N 1.31611 * 120.00154 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99712 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47136 * 90.00230 * 22 20 18 24 24 H 1.48493 * 109.46931 * 210.00649 * 22 20 18 25 25 H 1.48500 * 109.46860 * 330.00204 * 22 20 18 26 26 C 1.54613 * 102.90796 * 322.86949 * 14 13 12 27 27 H 1.09002 * 110.32788 * 262.79988 * 26 14 13 28 28 C 1.53005 * 110.41129 * 140.63575 * 26 14 13 29 29 C 1.47489 * 127.03112 * 359.75102 * 12 10 7 30 30 H 1.09000 * 109.47485 * 59.99304 * 1 2 3 31 31 H 1.09000 * 109.47174 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46602 * 299.99272 * 1 2 3 33 33 H 1.09007 * 109.46476 * 240.00279 * 2 1 3 34 34 H 1.09000 * 109.47485 * 120.00696 * 2 1 3 35 35 H 1.08999 * 109.47129 * 60.00038 * 4 3 2 36 36 H 1.08998 * 109.47149 * 300.00271 * 4 3 2 37 37 H 1.08995 * 109.47442 * 305.00002 * 5 4 3 38 38 H 1.09002 * 109.46832 * 185.00054 * 5 4 3 39 39 H 1.09009 * 109.46776 * 179.97438 * 9 7 6 40 40 H 1.08997 * 109.47002 * 299.99355 * 9 7 6 41 41 H 1.09003 * 109.47307 * 60.00178 * 9 7 6 42 42 H 1.09004 * 110.66556 * 337.76908 * 13 12 10 43 43 H 1.09001 * 110.66523 * 100.88693 * 13 12 10 44 44 H 1.08995 * 109.47450 * 48.65626 * 16 14 13 45 45 H 1.09003 * 109.47182 * 168.65091 * 16 14 13 46 46 H 0.97003 * 120.00439 * 359.97438 * 17 16 14 47 47 H 0.97002 * 119.99967 * 180.02562 * 21 20 18 48 48 H 1.08999 * 109.47110 * 302.86845 * 28 26 14 49 49 H 1.09003 * 109.47545 * 62.87100 * 28 26 14 50 50 H 1.09004 * 109.46946 * 182.87242 * 28 26 14 51 51 H 1.08992 * 109.91202 * 273.87822 * 29 12 10 52 52 H 1.09005 * 109.91043 * 34.96623 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9383 0.0001 6 8 3.3987 3.5447 1.2217 7 6 3.7205 4.9331 1.3249 8 1 3.7324 5.3781 0.3299 9 6 5.0985 5.0907 1.9707 10 6 2.6858 5.6268 2.1730 11 8 1.8126 4.9813 2.7133 12 7 2.7277 6.9652 2.3268 13 6 1.7901 7.8028 3.1097 14 6 1.6150 9.0627 2.2310 15 1 0.8894 8.8791 1.4385 16 6 1.1972 10.2671 3.0768 17 7 -0.1876 10.0940 3.5226 18 6 -0.7821 11.0532 4.2984 19 1 -0.2300 11.9371 4.5820 20 6 -2.0944 10.8895 4.7203 21 7 -2.7670 9.8122 4.3752 22 14 -2.9056 12.1982 5.7780 23 1 -3.5728 13.1969 4.9048 24 1 -3.9138 11.5635 6.6643 25 1 -1.8748 12.8746 6.6058 26 6 3.0288 9.2717 1.6412 27 1 3.5768 10.0118 2.2244 28 6 2.9372 9.7110 0.1784 29 6 3.7127 7.8958 1.7447 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3632 0.5137 0.8901 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 3.8333 0.9767 -0.8908 36 1 3.8341 0.9764 0.8891 37 1 3.3492 3.4419 -0.8411 38 1 4.9082 3.0254 -0.0899 39 1 5.3441 6.1498 2.0489 40 1 5.0865 4.6457 2.9656 41 1 5.8468 4.5889 1.3572 42 1 0.8365 7.2918 3.2423 43 1 2.2237 8.0666 4.0744 44 1 1.8513 10.3457 3.9452 45 1 1.2758 11.1755 2.4794 46 1 -0.6836 9.3004 3.2676 47 1 -3.6842 9.6979 4.6697 48 1 2.3771 8.9683 -0.3896 49 1 2.4286 10.6733 0.1191 50 1 3.9409 9.8044 -0.2364 51 1 4.5870 7.9635 2.3919 52 1 4.0098 7.5502 0.7545 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107024980.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:37 Heat of formation + Delta-G solvation = -119.011647 kcal Electronic energy + Delta-G solvation = -28822.367970 eV Core-core repulsion = 24822.471120 eV Total energy + Delta-G solvation = -3999.896850 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.27756 -38.81981 -38.02763 -37.04510 -34.65844 -33.08102 -32.34177 -31.46296 -31.16373 -29.24020 -28.81201 -26.56570 -25.67195 -24.13471 -23.01758 -22.98427 -22.61288 -21.14136 -19.90109 -19.42210 -17.53865 -17.23787 -16.99756 -16.79113 -16.14856 -15.87883 -15.37376 -15.28420 -14.68457 -14.60155 -14.31134 -13.98251 -13.65785 -13.57750 -13.28653 -13.12736 -13.04650 -12.90960 -12.81407 -12.66739 -12.44264 -12.22262 -12.06663 -11.86893 -11.80203 -11.58149 -11.39167 -11.25978 -11.15332 -11.08060 -10.82845 -10.53637 -10.45472 -10.33251 -10.08511 -9.98562 -9.82471 -9.64130 -9.40124 -8.84531 -8.54036 -6.88936 -5.71643 -3.01261 2.69504 2.72963 3.41639 3.46727 3.51322 3.53753 3.63805 4.34945 4.57161 4.58470 4.63077 4.72419 4.75389 4.81173 4.85343 4.90214 4.92656 4.93836 5.06273 5.11316 5.14417 5.27082 5.28534 5.38676 5.41220 5.44859 5.51821 5.53236 5.56263 5.61609 5.72722 5.77920 5.81652 5.84014 5.97622 5.99137 6.09644 6.14935 6.20204 6.24077 6.43724 6.50212 6.73548 6.86155 6.87105 7.01693 7.65438 7.73219 8.30923 8.46346 9.57468 10.14965 10.49121 11.50913 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.012238 B = 0.002514 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.485364 B =11136.997822 C =12797.450376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.058 3.942 3 O -0.377 6.377 4 C 0.066 3.934 5 C 0.061 3.939 6 O -0.347 6.347 7 C 0.076 3.924 8 H 0.083 0.917 9 C -0.173 4.173 10 C 0.530 3.470 11 O -0.513 6.513 12 N -0.621 5.621 13 C 0.116 3.884 14 C -0.102 4.102 15 H 0.083 0.917 16 C 0.166 3.834 17 N -0.733 5.733 18 C -0.241 4.241 19 H 0.070 0.930 20 C -0.013 4.013 21 N -0.931 5.931 22 Si 0.907 3.093 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C -0.101 4.101 27 H 0.088 0.912 28 C -0.141 4.141 29 C 0.103 3.897 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.044 0.956 34 H 0.047 0.953 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.089 0.911 43 H 0.075 0.925 44 H 0.021 0.979 45 H 0.023 0.977 46 H 0.385 0.615 47 H 0.255 0.745 48 H 0.054 0.946 49 H 0.063 0.937 50 H 0.053 0.947 51 H 0.068 0.932 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.356 -14.474 -13.281 28.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.297 6.297 4 C -0.011 4.011 5 C -0.016 4.016 6 O -0.265 6.265 7 C 0.014 3.986 8 H 0.101 0.899 9 C -0.231 4.231 10 C 0.316 3.684 11 O -0.387 6.387 12 N -0.357 5.357 13 C -0.005 4.005 14 C -0.122 4.122 15 H 0.102 0.898 16 C 0.038 3.962 17 N -0.377 5.377 18 C -0.373 4.373 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.579 5.579 22 Si 0.738 3.262 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.120 4.120 27 H 0.106 0.894 28 C -0.199 4.199 29 C -0.020 4.020 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.107 0.893 43 H 0.093 0.907 44 H 0.039 0.961 45 H 0.041 0.959 46 H 0.218 0.782 47 H 0.065 0.935 48 H 0.073 0.927 49 H 0.082 0.918 50 H 0.072 0.928 51 H 0.086 0.914 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 19.622 -14.773 -12.742 27.670 hybrid contribution -0.272 0.397 0.247 0.540 sum 19.350 -14.377 -12.495 27.152 Atomic orbital electron populations 1.21745 0.93584 1.02084 1.03605 1.22455 0.95933 0.83798 0.99678 1.88036 1.20125 1.26181 1.95310 1.22460 0.82676 0.95230 1.00718 1.22633 0.98202 0.93057 0.87711 1.88130 1.80638 1.20425 1.37329 1.21809 0.93689 0.83963 0.99093 0.89901 1.22293 0.94986 1.03257 1.02517 1.19900 0.85876 0.80534 0.82041 1.90768 1.36382 1.63817 1.47689 1.48798 1.30936 1.04912 1.51088 1.22499 0.94162 0.89810 0.94029 1.22516 0.95567 0.95647 0.98438 0.89825 1.20615 0.87863 0.93311 0.94451 1.42384 1.08862 1.24735 1.61768 1.19198 0.95066 0.99430 1.23571 0.91198 1.24759 0.97030 0.97806 1.01347 1.69663 1.10756 1.27406 1.50063 0.86196 0.79171 0.80867 0.79982 1.21767 1.21782 1.20791 1.22096 0.96721 0.95608 0.97608 0.89366 1.21836 1.01323 1.02005 0.94712 1.22295 0.91854 0.89665 0.98203 0.91869 0.91217 0.91402 0.93741 0.93424 0.91885 0.92379 0.92252 0.91690 0.90599 0.91040 0.91424 0.89285 0.90719 0.96111 0.95932 0.78172 0.93461 0.92657 0.91796 0.92784 0.91428 0.91120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 10.28 37.16 0.38 -1.01 16 2 C 0.06 0.54 6.66 37.16 0.25 0.79 16 3 O -0.38 -4.72 10.31 -40.08 -0.41 -5.13 16 4 C 0.07 0.60 6.32 37.16 0.23 0.84 16 5 C 0.06 0.57 6.13 37.16 0.23 0.80 16 6 O -0.35 -4.76 9.49 -59.70 -0.57 -5.33 16 7 C 0.08 0.90 2.50 -27.89 -0.07 0.83 16 8 H 0.08 0.78 7.34 -51.93 -0.38 0.40 16 9 C -0.17 -1.50 9.40 37.16 0.35 -1.15 16 10 C 0.53 8.60 7.28 -10.98 -0.08 8.52 16 11 O -0.51 -11.03 16.72 -14.31 -0.24 -11.27 16 12 N -0.62 -8.97 3.29 -169.98 -0.56 -9.53 16 13 C 0.12 1.97 6.44 -2.32 -0.01 1.96 16 14 C -0.10 -1.62 2.60 -88.93 -0.23 -1.85 16 15 H 0.08 1.44 7.86 -51.93 -0.41 1.04 16 16 C 0.17 3.22 5.58 -4.05 -0.02 3.20 16 17 N -0.73 -18.66 5.52 -59.91 -0.33 -18.99 16 18 C -0.24 -6.82 9.99 -15.05 -0.15 -6.97 16 19 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 20 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 21 N -0.93 -28.84 13.06 55.49 0.72 -28.12 16 22 Si 0.91 22.75 29.55 -169.99 -5.02 17.72 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 24 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 26 C -0.10 -1.15 3.17 -89.25 -0.28 -1.43 16 27 H 0.09 0.93 7.85 -51.93 -0.41 0.53 16 28 C -0.14 -1.41 8.90 37.16 0.33 -1.08 16 29 C 0.10 1.06 5.03 -2.98 -0.01 1.05 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.04 0.32 8.14 -51.92 -0.42 -0.10 16 34 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 38 H 0.07 0.40 7.87 -51.93 -0.41 -0.01 16 39 H 0.08 0.56 5.71 -51.92 -0.30 0.26 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.43 7.87 -51.93 -0.41 0.03 16 42 H 0.09 1.81 7.85 -51.93 -0.41 1.40 16 43 H 0.07 1.26 7.95 -51.93 -0.41 0.85 16 44 H 0.02 0.41 8.00 -51.93 -0.42 -0.01 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.38 10.47 7.67 -40.82 -0.31 10.15 16 47 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 48 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 50 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 51 H 0.07 0.58 7.31 -51.93 -0.38 0.20 16 52 H 0.07 0.58 6.93 -51.93 -0.36 0.22 16 LS Contribution 417.19 15.07 6.29 6.29 Total: -1.00 -36.50 417.19 -8.95 -45.45 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -9.64 Total: 4.90 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: 0.81 Total: 4.01 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: -0.17 Total: -56.64 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -1.22 Total: -21.74 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -36.50 -8.95 -45.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107024980.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.557 kcal (2) G-P(sol) polarization free energy of solvation -36.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds