Wall clock time and date at job start Tue Mar 31 2020 04:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42899 * 109.46769 * 2 1 4 4 C 1.42902 * 113.99880 * 184.29587 * 3 2 1 5 5 H 1.09002 * 109.46703 * 9.47178 * 4 3 2 6 6 C 1.50699 * 109.47161 * 129.47152 * 4 3 2 7 7 O 1.21272 * 120.00178 * 3.35409 * 6 4 3 8 8 N 1.34784 * 119.99697 * 183.35867 * 6 4 3 9 9 C 1.46496 * 119.99880 * 174.61671 * 8 6 4 10 10 C 1.52999 * 109.47338 * 179.97438 * 9 8 6 11 11 C 1.52994 * 109.51092 * 60.09928 * 10 9 8 12 12 C 1.53293 * 109.51464 * 180.25329 * 10 9 8 13 13 N 1.47220 * 108.40471 * 172.22987 * 12 10 9 14 14 C 1.36943 * 121.03366 * 129.46105 * 13 12 10 15 15 H 1.07995 * 120.00111 * 208.79166 * 14 13 12 16 16 C 1.38817 * 119.99604 * 28.79433 * 14 13 12 17 17 N 1.31615 * 119.99943 * 11.31959 * 16 14 13 18 18 Si 1.86791 * 119.99621 * 191.31278 * 16 14 13 19 19 H 1.48499 * 109.47234 * 90.00548 * 18 16 14 20 20 H 1.48506 * 109.47164 * 210.00064 * 18 16 14 21 21 H 1.48500 * 109.47731 * 330.00313 * 18 16 14 22 22 C 1.47155 * 117.98917 * 309.48520 * 13 12 10 23 23 C 1.53292 * 108.41323 * 50.51679 * 22 13 12 24 24 O 1.42961 * 109.22731 * 307.67900 * 23 22 13 25 25 C 1.52998 * 109.46913 * 249.47524 * 4 3 2 26 26 C 1.53001 * 109.46917 * 302.46557 * 25 4 3 27 27 C 1.52994 * 109.47695 * 62.47225 * 25 4 3 28 28 H 1.08991 * 109.47448 * 299.99930 * 1 2 3 29 29 H 1.09007 * 109.46781 * 60.00183 * 1 2 3 30 30 H 1.09006 * 109.46514 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46733 * 240.00282 * 2 1 3 32 32 H 1.08998 * 109.47020 * 119.99880 * 2 1 3 33 33 H 0.96997 * 120.00134 * 354.61059 * 8 6 4 34 34 H 1.08998 * 109.47269 * 59.99387 * 9 8 6 35 35 H 1.08998 * 109.46999 * 299.99890 * 9 8 6 36 36 H 1.09007 * 109.47400 * 299.90243 * 11 10 9 37 37 H 1.08993 * 109.47493 * 59.90084 * 11 10 9 38 38 H 1.09003 * 109.47462 * 179.90170 * 11 10 9 39 39 H 1.09000 * 109.68279 * 291.94859 * 12 10 9 40 40 H 1.08997 * 109.67985 * 52.50005 * 12 10 9 41 41 H 0.97001 * 119.99712 * 180.02562 * 17 16 14 42 42 H 1.09002 * 109.67663 * 290.77825 * 22 13 12 43 43 H 1.08999 * 109.68496 * 170.26570 * 22 13 12 44 44 H 1.08998 * 109.51039 * 67.61105 * 23 22 13 45 45 H 1.09006 * 109.51132 * 187.70550 * 23 22 13 46 46 H 1.09005 * 109.46964 * 182.47236 * 25 4 3 47 47 H 1.09002 * 109.47171 * 184.14222 * 26 25 4 48 48 H 1.08997 * 109.47922 * 304.14956 * 26 25 4 49 49 H 1.09003 * 109.46879 * 64.14981 * 26 25 4 50 50 H 1.08998 * 109.47359 * 57.74179 * 27 25 4 51 51 H 1.08998 * 109.47472 * 177.74550 * 27 25 4 52 52 H 1.09005 * 109.46890 * 297.74595 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4274 1.4614 -0.0978 5 1 3.8557 0.4845 -0.3222 6 6 3.7792 2.4289 -1.1983 7 8 2.9004 3.0137 -1.7954 8 7 5.0704 2.6442 -1.5191 9 6 5.4090 3.4926 -2.6644 10 6 6.9301 3.5723 -2.8081 11 6 7.4965 2.1687 -3.0314 12 6 7.2856 4.4650 -4.0026 13 7 8.7424 4.6773 -4.0069 14 6 9.4834 4.4655 -5.1389 15 1 10.5182 4.1671 -5.0589 16 6 8.9043 4.6346 -6.3891 17 7 7.7243 5.2078 -6.4957 18 14 9.7999 4.0486 -7.9200 19 1 9.4191 2.6426 -8.2086 20 1 9.4266 4.9088 -9.0716 21 1 11.2659 4.1286 -7.6971 22 6 9.3789 5.1237 -2.7574 23 6 8.9214 4.1989 -1.6237 24 8 7.4935 4.1310 -1.6188 25 6 3.9905 1.9724 1.2299 26 6 3.3433 3.3150 1.5753 27 6 3.6869 0.9601 2.3361 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3632 -1.0278 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 5.7755 2.2375 -0.9916 34 1 5.0063 4.4932 -2.5071 35 1 4.9798 3.0668 -3.5714 36 1 7.2465 1.5362 -2.1795 37 1 7.0667 1.7433 -3.9381 38 1 8.5801 2.2263 -3.1354 39 1 6.9834 3.9764 -4.9288 40 1 6.7752 5.4235 -3.9091 41 1 7.3195 5.3255 -7.3694 42 1 9.0793 6.1487 -2.5387 43 1 10.4630 5.0719 -2.8588 44 1 9.3330 3.2016 -1.7789 45 1 9.2712 4.5926 -0.6693 46 1 5.0693 2.1012 1.1414 47 1 3.7970 3.7144 2.4824 48 1 3.4969 4.0146 0.7538 49 1 2.2746 3.1725 1.7361 50 1 4.1140 -0.0070 2.0709 51 1 4.1227 1.3049 3.2738 52 1 2.6075 0.8612 2.4518 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107937848.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:08 Heat of formation + Delta-G solvation = -113.579720 kcal Electronic energy + Delta-G solvation = -30318.927168 eV Core-core repulsion = 26319.265864 eV Total energy + Delta-G solvation = -3999.661304 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.22705 -39.07447 -37.77057 -35.14563 -34.79884 -34.28915 -31.71993 -31.30276 -31.25938 -28.02763 -27.82877 -27.28297 -26.23199 -25.03051 -23.22799 -22.98415 -21.49522 -21.03622 -19.91836 -18.73967 -17.60635 -16.95869 -16.86809 -16.20121 -15.80656 -15.40906 -15.06759 -14.72608 -14.54073 -14.48424 -14.25012 -13.96702 -13.72931 -13.50955 -13.23000 -13.06160 -12.75255 -12.64603 -12.52135 -12.40436 -12.23775 -12.20697 -11.86642 -11.60539 -11.58386 -11.29103 -11.20596 -11.10119 -10.99080 -10.89997 -10.84736 -10.67623 -10.31287 -10.25068 -10.12128 -10.00809 -9.58169 -9.26908 -9.01751 -8.77378 -8.57293 -6.71907 -5.85172 -3.33264 2.75659 2.99459 3.32233 3.39011 3.40646 3.78405 4.24489 4.41472 4.50604 4.58052 4.74556 4.84037 4.92354 5.00539 5.13429 5.15575 5.22115 5.33213 5.37461 5.44015 5.48155 5.51964 5.53961 5.65175 5.67629 5.69814 5.77540 5.89139 5.90457 5.92833 5.93222 6.01931 6.07403 6.10066 6.14079 6.27754 6.32188 6.45503 6.57833 6.68763 6.75426 6.81712 6.95150 7.08377 7.49214 7.68613 7.71263 7.88009 8.33696 8.41504 9.10275 9.71740 10.30105 11.22256 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.019016 B = 0.002924 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.119910 B = 9574.283775 C =10385.135417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.052 3.948 3 O -0.350 6.350 4 C 0.078 3.922 5 H 0.085 0.915 6 C 0.503 3.497 7 O -0.524 6.524 8 N -0.717 5.717 9 C 0.141 3.859 10 C 0.078 3.922 11 C -0.161 4.161 12 C 0.160 3.840 13 N -0.591 5.591 14 C -0.254 4.254 15 H 0.067 0.933 16 C 0.005 3.995 17 N -0.903 5.903 18 Si 0.906 3.094 19 H -0.287 1.287 20 H -0.290 1.290 21 H -0.279 1.279 22 C 0.109 3.891 23 C 0.046 3.954 24 O -0.384 6.384 25 C -0.104 4.104 26 C -0.142 4.142 27 C -0.146 4.146 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.400 0.600 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.041 0.959 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.098 0.902 40 H 0.029 0.971 41 H 0.256 0.744 42 H 0.026 0.974 43 H 0.061 0.939 44 H 0.047 0.953 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.054 0.946 48 H 0.057 0.943 49 H 0.063 0.937 50 H 0.052 0.948 51 H 0.060 0.940 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.250 -11.460 16.570 21.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.024 4.024 3 O -0.267 6.267 4 C 0.016 3.984 5 H 0.103 0.897 6 C 0.288 3.712 7 O -0.399 6.399 8 N -0.370 5.370 9 C 0.017 3.983 10 C 0.037 3.963 11 C -0.219 4.219 12 C 0.034 3.966 13 N -0.315 5.315 14 C -0.383 4.383 15 H 0.085 0.915 16 C -0.194 4.194 17 N -0.547 5.547 18 Si 0.736 3.264 19 H -0.214 1.214 20 H -0.216 1.216 21 H -0.204 1.204 22 C -0.018 4.018 23 C -0.032 4.032 24 O -0.303 6.303 25 C -0.123 4.123 26 C -0.199 4.199 27 C -0.203 4.203 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.235 0.765 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.060 0.940 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.116 0.884 40 H 0.047 0.953 41 H 0.066 0.934 42 H 0.043 0.957 43 H 0.079 0.921 44 H 0.065 0.935 45 H 0.098 0.902 46 H 0.102 0.898 47 H 0.073 0.927 48 H 0.076 0.924 49 H 0.082 0.918 50 H 0.071 0.929 51 H 0.079 0.921 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.215 -10.768 16.097 21.037 hybrid contribution 1.212 -0.723 -0.893 1.670 sum -7.003 -11.491 15.204 20.303 Atomic orbital electron populations 1.21723 0.93576 1.02050 1.03396 1.22663 0.95942 0.83874 0.99941 1.88033 1.18701 1.25944 1.94063 1.22043 0.83842 0.98428 0.94044 0.89713 1.20613 0.82928 0.83373 0.84303 1.90713 1.47663 1.48543 1.53029 1.45956 1.06844 1.51600 1.32641 1.21348 0.93440 0.95244 0.88233 1.22568 0.90703 0.94332 0.88708 1.22201 1.03223 0.95827 1.00610 1.21323 0.84670 0.95852 0.94790 1.43982 1.03131 1.77392 1.06952 1.19160 0.95518 1.40125 0.83531 0.91514 1.25139 0.97535 0.98804 0.97965 1.69958 1.16917 1.44597 1.23265 0.86240 0.79206 0.78178 0.82815 1.21371 1.21603 1.20439 1.21602 0.97128 0.95448 0.87575 1.23027 0.81504 0.99525 0.99125 1.87817 1.20161 1.83650 1.38674 1.21485 1.00280 0.97066 0.93447 1.21723 1.01330 0.95466 1.01408 1.21844 1.02266 0.98112 0.98121 0.91856 0.91579 0.91220 0.93402 0.93208 0.76469 0.90829 0.90206 0.94035 0.91914 0.90860 0.88390 0.95268 0.93379 0.95656 0.92098 0.93458 0.90227 0.89805 0.92684 0.92391 0.91759 0.92852 0.92102 0.91980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 10.28 37.16 0.38 -0.85 16 2 C 0.05 0.48 6.10 37.16 0.23 0.71 16 3 O -0.35 -4.40 8.34 -55.12 -0.46 -4.86 16 4 C 0.08 0.90 2.37 -27.88 -0.07 0.84 16 5 H 0.09 0.78 7.60 -51.93 -0.39 0.39 16 6 C 0.50 7.67 5.98 -10.98 -0.07 7.60 16 7 O -0.52 -10.30 16.51 -14.32 -0.24 -10.54 16 8 N -0.72 -10.31 5.09 -60.30 -0.31 -10.61 16 9 C 0.14 2.43 4.82 -4.04 -0.02 2.42 16 10 C 0.08 1.43 0.76 -90.47 -0.07 1.36 16 11 C -0.16 -2.69 7.92 37.15 0.29 -2.40 16 12 C 0.16 3.71 4.08 -3.50 -0.01 3.70 16 13 N -0.59 -14.26 2.57 -171.77 -0.44 -14.70 16 14 C -0.25 -6.69 9.65 -15.05 -0.15 -6.84 16 15 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 16 C 0.00 0.12 5.07 -17.43 -0.09 0.03 16 17 N -0.90 -25.58 10.99 55.49 0.61 -24.97 16 18 Si 0.91 21.17 29.57 -169.99 -5.03 16.15 16 19 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 C 0.11 2.21 6.73 -3.53 -0.02 2.19 16 23 C 0.05 0.78 6.60 37.31 0.25 1.03 16 24 O -0.38 -6.93 9.97 -35.23 -0.35 -7.28 16 25 C -0.10 -1.01 2.73 -90.62 -0.25 -1.26 16 26 C -0.14 -1.60 8.81 37.16 0.33 -1.27 16 27 C -0.15 -1.12 8.45 37.15 0.31 -0.80 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.43 8.09 -51.93 -0.42 0.01 16 32 H 0.05 0.37 7.08 -51.93 -0.37 0.00 16 33 H 0.40 4.94 6.65 -40.82 -0.27 4.67 16 34 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 35 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.04 0.57 6.87 -51.92 -0.36 0.21 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.07 1.34 6.12 -51.93 -0.32 1.02 16 39 H 0.10 2.51 6.15 -51.93 -0.32 2.19 16 40 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 1.17 7.96 -51.93 -0.41 0.76 16 44 H 0.05 0.77 6.25 -51.93 -0.32 0.45 16 45 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 46 H 0.08 0.76 7.58 -51.93 -0.39 0.37 16 47 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.06 0.80 7.16 -51.93 -0.37 0.42 16 49 H 0.06 0.75 7.75 -51.93 -0.40 0.35 16 50 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 51 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 52 H 0.06 0.50 7.10 -51.93 -0.37 0.13 16 LS Contribution 400.95 15.07 6.04 6.04 Total: -1.00 -31.55 400.95 -8.46 -40.01 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -9.34 Total: 4.32 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: 1.05 Total: 6.45 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: -0.14 Total: -50.29 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -1.05 Total: -22.68 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.55 -8.46 -40.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107937848.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.572 kcal (2) G-P(sol) polarization free energy of solvation -31.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds