Wall clock time and date at job start Tue Mar 31 2020 04:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42904 * 109.47486 * 2 1 4 4 C 1.42899 * 114.00044 * 179.28640 * 3 2 1 5 5 H 1.08994 * 109.47641 * 13.32556 * 4 3 2 6 6 C 1.50698 * 109.46980 * 133.32670 * 4 3 2 7 7 O 1.21286 * 120.00366 * 2.73502 * 6 4 3 8 8 N 1.34775 * 120.00133 * 182.73992 * 6 4 3 9 9 C 1.46505 * 120.00400 * 175.16351 * 8 6 4 10 10 C 1.52991 * 109.47359 * 179.97438 * 9 8 6 11 11 C 1.53002 * 109.51313 * 304.99770 * 10 9 8 12 12 C 1.53294 * 109.51412 * 184.89974 * 10 9 8 13 13 N 1.47152 * 108.38533 * 187.77391 * 12 10 9 14 14 C 1.36940 * 120.98077 * 230.50674 * 13 12 10 15 15 H 1.08001 * 119.99390 * 153.42173 * 14 13 12 16 16 C 1.38809 * 120.00210 * 333.42610 * 14 13 12 17 17 N 1.31614 * 120.00044 * 162.11104 * 16 14 13 18 18 Si 1.86795 * 119.99858 * 342.11156 * 16 14 13 19 19 H 1.48504 * 109.47297 * 94.95259 * 18 16 14 20 20 H 1.48501 * 109.46978 * 214.95082 * 18 16 14 21 21 H 1.48504 * 109.47490 * 334.95131 * 18 16 14 22 22 C 1.47149 * 118.03794 * 50.53406 * 13 12 10 23 23 C 1.53296 * 108.38371 * 309.46706 * 22 13 12 24 24 O 1.42953 * 109.26729 * 52.27512 * 23 22 13 25 25 C 1.53005 * 109.46823 * 253.32223 * 4 3 2 26 26 C 1.53005 * 109.47258 * 302.40853 * 25 4 3 27 27 C 1.52994 * 109.47168 * 62.40786 * 25 4 3 28 28 H 1.08998 * 109.47299 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47062 * 300.00398 * 1 2 3 30 30 H 1.09004 * 109.46801 * 60.00040 * 1 2 3 31 31 H 1.09003 * 109.47317 * 240.00039 * 2 1 3 32 32 H 1.08999 * 109.47229 * 119.99841 * 2 1 3 33 33 H 0.96997 * 119.99866 * 355.43339 * 8 6 4 34 34 H 1.08998 * 109.46720 * 300.00362 * 9 8 6 35 35 H 1.09003 * 109.46728 * 59.99538 * 9 8 6 36 36 H 1.09001 * 109.47151 * 59.99898 * 11 10 9 37 37 H 1.09006 * 109.47310 * 179.97438 * 11 10 9 38 38 H 1.08996 * 109.46990 * 300.00056 * 11 10 9 39 39 H 1.09006 * 109.68081 * 307.49545 * 12 10 9 40 40 H 1.08998 * 109.68350 * 68.00740 * 12 10 9 41 41 H 0.97001 * 120.00424 * 179.97438 * 17 16 14 42 42 H 1.09004 * 109.68575 * 69.18696 * 22 13 12 43 43 H 1.08996 * 109.68546 * 189.74193 * 22 13 12 44 44 H 1.09004 * 109.51437 * 172.22927 * 23 22 13 45 45 H 1.09006 * 109.51234 * 292.32566 * 23 22 13 46 46 H 1.09001 * 109.46804 * 182.40956 * 25 4 3 47 47 H 1.08993 * 109.46839 * 63.59175 * 26 25 4 48 48 H 1.08995 * 109.47024 * 183.59631 * 26 25 4 49 49 H 1.08999 * 109.46621 * 303.59746 * 26 25 4 50 50 H 1.09005 * 109.46876 * 56.00452 * 27 25 4 51 51 H 1.08993 * 109.47471 * 175.99953 * 27 25 4 52 52 H 1.08995 * 109.47502 * 296.00648 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4601 0.0163 5 1 3.8747 0.4910 -0.2114 6 6 3.8668 2.4673 -1.0165 7 8 3.0370 3.0692 -1.6647 8 7 5.1787 2.6992 -1.2198 9 6 5.6057 3.5983 -2.2948 10 6 7.1330 3.6873 -2.3089 11 6 7.6330 4.1101 -0.9260 12 6 7.5762 4.7201 -3.3513 13 7 9.0407 4.6523 -3.4784 14 6 9.8082 5.7837 -3.4000 15 1 10.8338 5.7184 -3.0681 16 6 9.2679 7.0143 -3.7470 17 7 9.8535 8.1250 -3.3524 18 14 7.7097 7.0940 -4.7741 19 1 6.5326 7.2271 -3.8784 20 1 7.7752 8.2667 -5.6828 21 1 7.5822 5.8517 -5.5776 22 6 9.6560 3.3329 -3.6927 23 6 9.1115 2.3677 -2.6336 24 8 7.6826 2.4113 -2.6458 25 6 3.8903 1.9188 1.4017 26 6 3.2202 3.2504 1.7464 27 6 3.5002 0.8673 2.4424 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.8405 2.2677 -0.6570 34 1 5.2550 3.2124 -3.2520 35 1 5.1858 4.5901 -2.1272 36 1 7.3191 3.3744 -0.1856 37 1 8.7212 4.1728 -0.9366 38 1 7.2151 5.0838 -0.6707 39 1 7.1135 4.4938 -4.3120 40 1 7.2810 5.7182 -3.0278 41 1 9.4762 8.9850 -3.5952 42 1 9.4027 2.9669 -4.6878 43 1 10.7386 3.4125 -3.5949 44 1 9.4468 1.3549 -2.8572 45 1 9.4763 2.6630 -1.6498 46 1 4.9728 2.0460 1.4018 47 1 2.1413 3.1087 1.8089 48 1 3.5958 3.6088 2.7047 49 1 3.4461 3.9822 0.9708 50 1 3.9196 -0.0980 2.1584 51 1 3.8893 1.1595 3.4177 52 1 2.4141 0.7910 2.4925 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107937849.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:10 Heat of formation + Delta-G solvation = -105.446132 kcal Electronic energy + Delta-G solvation = -30469.634448 eV Core-core repulsion = 26470.325842 eV Total energy + Delta-G solvation = -3999.308606 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.37892 -39.36664 -37.91621 -35.25438 -34.97303 -34.52613 -31.94662 -31.60706 -31.39203 -28.52767 -27.96694 -27.37097 -26.42748 -25.18760 -23.64681 -23.03432 -21.52952 -21.04977 -20.04943 -19.17334 -17.74813 -17.11367 -16.97305 -16.34602 -16.14320 -15.47791 -15.32892 -15.05345 -14.66549 -14.62013 -14.39724 -14.03501 -13.99973 -13.85472 -13.41135 -13.31673 -12.74506 -12.63768 -12.58376 -12.38223 -12.34299 -12.28983 -12.23709 -11.88688 -11.66514 -11.56471 -11.42981 -11.37435 -11.20372 -11.12298 -10.96849 -10.89210 -10.40532 -10.19710 -10.14477 -9.78388 -9.53234 -9.47149 -9.31849 -8.95985 -8.63156 -7.05217 -6.02102 -3.41185 2.63925 2.84998 3.27434 3.45326 3.45782 3.69562 4.00850 4.42268 4.44884 4.47880 4.64446 4.71980 4.77639 4.84652 4.92952 5.07484 5.11187 5.16960 5.20985 5.28862 5.29665 5.38029 5.38589 5.46061 5.57739 5.63960 5.69400 5.70942 5.72905 5.80160 5.82134 5.86584 5.89330 5.95691 5.98845 6.03557 6.18517 6.19872 6.23420 6.42747 6.43131 6.50554 6.57802 6.72126 6.87151 7.55554 7.59186 7.80707 8.22911 8.27426 8.80182 9.61381 9.97234 11.13383 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.018465 B = 0.003112 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.980333 B = 8996.423533 C = 9292.377012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.051 3.949 3 O -0.350 6.350 4 C 0.079 3.921 5 H 0.087 0.913 6 C 0.506 3.494 7 O -0.524 6.524 8 N -0.717 5.717 9 C 0.136 3.864 10 C 0.089 3.911 11 C -0.164 4.164 12 C 0.108 3.892 13 N -0.604 5.604 14 C -0.261 4.261 15 H 0.089 0.911 16 C 0.025 3.975 17 N -0.908 5.908 18 Si 0.879 3.121 19 H -0.287 1.287 20 H -0.301 1.301 21 H -0.267 1.267 22 C 0.113 3.887 23 C 0.043 3.957 24 O -0.380 6.380 25 C -0.106 4.106 26 C -0.143 4.143 27 C -0.147 4.147 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.051 0.949 33 H 0.402 0.598 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.047 0.953 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.038 0.962 40 H 0.081 0.919 41 H 0.264 0.736 42 H 0.031 0.969 43 H 0.072 0.928 44 H 0.085 0.915 45 H 0.053 0.947 46 H 0.082 0.918 47 H 0.065 0.935 48 H 0.055 0.945 49 H 0.056 0.944 50 H 0.053 0.947 51 H 0.061 0.939 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.899 -18.149 10.960 24.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.025 4.025 3 O -0.268 6.268 4 C 0.017 3.983 5 H 0.104 0.896 6 C 0.291 3.709 7 O -0.399 6.399 8 N -0.372 5.372 9 C 0.012 3.988 10 C 0.048 3.952 11 C -0.222 4.222 12 C -0.018 4.018 13 N -0.328 5.328 14 C -0.389 4.389 15 H 0.106 0.894 16 C -0.174 4.174 17 N -0.550 5.550 18 Si 0.709 3.291 19 H -0.214 1.214 20 H -0.229 1.229 21 H -0.192 1.192 22 C -0.013 4.013 23 C -0.034 4.034 24 O -0.299 6.299 25 C -0.125 4.125 26 C -0.200 4.200 27 C -0.204 4.204 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.237 0.763 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.065 0.935 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.056 0.944 40 H 0.099 0.901 41 H 0.074 0.926 42 H 0.049 0.951 43 H 0.090 0.910 44 H 0.103 0.897 45 H 0.072 0.928 46 H 0.101 0.899 47 H 0.084 0.916 48 H 0.074 0.926 49 H 0.075 0.925 50 H 0.072 0.928 51 H 0.080 0.920 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.717 -17.513 10.408 24.016 hybrid contribution -0.084 -0.006 -0.374 0.383 sum -12.800 -17.520 10.034 23.905 Atomic orbital electron populations 1.21717 0.93523 1.02102 1.03382 1.22680 0.95949 0.83839 1.00049 1.88035 1.18127 1.25979 1.94621 1.22012 0.83897 0.98260 0.94139 0.89551 1.20575 0.82590 0.83728 0.84001 1.90720 1.51823 1.48864 1.48455 1.45940 1.06782 1.48705 1.35727 1.21365 0.92332 0.94451 0.90609 1.22247 0.91135 0.85817 0.96045 1.22224 1.03830 1.01073 0.95025 1.21936 0.86243 0.97784 0.95864 1.44293 1.00654 1.03490 1.84402 1.18889 0.97142 0.83460 1.39406 0.89376 1.25247 0.97999 0.95289 0.98872 1.69788 1.41439 0.97273 1.46536 0.87047 0.83462 0.77110 0.81471 1.21437 1.22924 1.19176 1.21624 0.97746 0.85984 0.95924 1.23087 0.81018 0.99678 0.99649 1.87843 1.20530 1.30858 1.90710 1.21521 1.00548 0.97218 0.93203 1.21737 1.01512 0.95517 1.01276 1.21861 1.02155 0.97832 0.98574 0.91159 0.91844 0.91613 0.93397 0.93062 0.76272 0.90802 0.89964 0.93451 0.90245 0.91547 0.94377 0.90131 0.92620 0.95127 0.91006 0.89656 0.92846 0.89937 0.91634 0.92560 0.92501 0.92764 0.92022 0.91923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 10.28 37.16 0.38 -0.76 16 2 C 0.05 0.45 6.02 37.16 0.22 0.67 16 3 O -0.35 -4.21 8.42 -55.13 -0.46 -4.67 16 4 C 0.08 0.86 2.38 -27.88 -0.07 0.79 16 5 H 0.09 0.76 7.65 -51.93 -0.40 0.36 16 6 C 0.51 7.31 5.99 -10.99 -0.07 7.25 16 7 O -0.52 -9.85 16.51 -14.34 -0.24 -10.09 16 8 N -0.72 -9.64 5.12 -60.29 -0.31 -9.95 16 9 C 0.14 2.20 4.85 -4.04 -0.02 2.18 16 10 C 0.09 1.53 0.78 -90.47 -0.07 1.46 16 11 C -0.16 -2.63 7.87 37.16 0.29 -2.33 16 12 C 0.11 2.31 3.02 -3.53 -0.01 2.30 16 13 N -0.60 -13.79 2.36 -171.83 -0.41 -14.20 16 14 C -0.26 -7.02 10.12 -15.06 -0.15 -7.17 16 15 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 16 C 0.03 0.71 5.30 -17.43 -0.09 0.62 16 17 N -0.91 -27.28 13.97 55.49 0.78 -26.50 16 18 Si 0.88 22.18 24.29 -169.99 -4.13 18.05 16 19 H -0.29 -7.01 6.73 56.52 0.38 -6.63 16 20 H -0.30 -7.78 7.11 56.52 0.40 -7.37 16 21 H -0.27 -6.63 6.13 56.52 0.35 -6.28 16 22 C 0.11 2.12 6.74 -3.53 -0.02 2.10 16 23 C 0.04 0.67 6.60 37.31 0.25 0.92 16 24 O -0.38 -6.33 10.17 -35.23 -0.36 -6.68 16 25 C -0.11 -0.96 2.72 -90.62 -0.25 -1.20 16 26 C -0.14 -1.51 8.82 37.16 0.33 -1.18 16 27 C -0.15 -1.04 8.15 37.15 0.30 -0.73 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.35 6.68 -51.93 -0.35 0.00 16 33 H 0.40 4.54 6.43 -40.82 -0.26 4.27 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 36 H 0.05 0.61 6.58 -51.93 -0.34 0.27 16 37 H 0.08 1.42 6.12 -51.93 -0.32 1.10 16 38 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.04 0.85 6.64 -51.93 -0.34 0.50 16 40 H 0.08 1.87 4.58 -51.93 -0.24 1.63 16 41 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 42 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 1.30 7.96 -51.93 -0.41 0.88 16 44 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.05 0.81 6.26 -51.93 -0.32 0.49 16 46 H 0.08 0.66 7.56 -51.93 -0.39 0.27 16 47 H 0.06 0.73 7.74 -51.93 -0.40 0.33 16 48 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 49 H 0.06 0.72 7.17 -51.93 -0.37 0.35 16 50 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 51 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 52 H 0.06 0.47 7.03 -51.93 -0.37 0.10 16 LS Contribution 392.92 15.07 5.92 5.92 Total: -1.00 -32.82 392.92 -7.41 -40.22 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -9.23 Total: 3.00 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: 1.03 Total: 4.90 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: 0.06 Total: -50.65 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -1.06 Total: -21.44 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.13 Total: 18.05 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.82 -7.41 -40.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107937849.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.224 kcal (2) G-P(sol) polarization free energy of solvation -32.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds