Wall clock time and date at job start Tue Mar 31 2020 04:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42904 * 109.47486 * 2 1 4 4 C 1.42899 * 114.00044 * 179.28640 * 3 2 1 5 5 H 1.08994 * 109.47641 * 13.32556 * 4 3 2 6 6 C 1.50698 * 109.46980 * 133.32670 * 4 3 2 7 7 O 1.21286 * 120.00366 * 2.73502 * 6 4 3 8 8 N 1.34775 * 120.00133 * 182.73992 * 6 4 3 9 9 C 1.46505 * 120.00400 * 175.16351 * 8 6 4 10 10 C 1.52991 * 109.47359 * 179.97438 * 9 8 6 11 11 C 1.53002 * 109.51313 * 304.99770 * 10 9 8 12 12 C 1.53294 * 109.51412 * 184.89974 * 10 9 8 13 13 N 1.47152 * 108.38533 * 187.77391 * 12 10 9 14 14 C 1.36940 * 120.98077 * 230.50674 * 13 12 10 15 15 H 1.08001 * 119.99390 * 153.42173 * 14 13 12 16 16 C 1.38809 * 120.00210 * 333.42610 * 14 13 12 17 17 N 1.31614 * 120.00044 * 162.11104 * 16 14 13 18 18 Si 1.86795 * 119.99858 * 342.11156 * 16 14 13 19 19 H 1.48504 * 109.47297 * 94.95259 * 18 16 14 20 20 H 1.48501 * 109.46978 * 214.95082 * 18 16 14 21 21 H 1.48504 * 109.47490 * 334.95131 * 18 16 14 22 22 C 1.47149 * 118.03794 * 50.53406 * 13 12 10 23 23 C 1.53296 * 108.38371 * 309.46706 * 22 13 12 24 24 O 1.42953 * 109.26729 * 52.27512 * 23 22 13 25 25 C 1.53005 * 109.46823 * 253.32223 * 4 3 2 26 26 C 1.53005 * 109.47258 * 302.40853 * 25 4 3 27 27 C 1.52994 * 109.47168 * 62.40786 * 25 4 3 28 28 H 1.08998 * 109.47299 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47062 * 300.00398 * 1 2 3 30 30 H 1.09004 * 109.46801 * 60.00040 * 1 2 3 31 31 H 1.09003 * 109.47317 * 240.00039 * 2 1 3 32 32 H 1.08999 * 109.47229 * 119.99841 * 2 1 3 33 33 H 0.96997 * 119.99866 * 355.43339 * 8 6 4 34 34 H 1.08998 * 109.46720 * 300.00362 * 9 8 6 35 35 H 1.09003 * 109.46728 * 59.99538 * 9 8 6 36 36 H 1.09001 * 109.47151 * 59.99898 * 11 10 9 37 37 H 1.09006 * 109.47310 * 179.97438 * 11 10 9 38 38 H 1.08996 * 109.46990 * 300.00056 * 11 10 9 39 39 H 1.09006 * 109.68081 * 307.49545 * 12 10 9 40 40 H 1.08998 * 109.68350 * 68.00740 * 12 10 9 41 41 H 0.97001 * 120.00424 * 179.97438 * 17 16 14 42 42 H 1.09004 * 109.68575 * 69.18696 * 22 13 12 43 43 H 1.08996 * 109.68546 * 189.74193 * 22 13 12 44 44 H 1.09004 * 109.51437 * 172.22927 * 23 22 13 45 45 H 1.09006 * 109.51234 * 292.32566 * 23 22 13 46 46 H 1.09001 * 109.46804 * 182.40956 * 25 4 3 47 47 H 1.08993 * 109.46839 * 63.59175 * 26 25 4 48 48 H 1.08995 * 109.47024 * 183.59631 * 26 25 4 49 49 H 1.08999 * 109.46621 * 303.59746 * 26 25 4 50 50 H 1.09005 * 109.46876 * 56.00452 * 27 25 4 51 51 H 1.08993 * 109.47471 * 175.99953 * 27 25 4 52 52 H 1.08995 * 109.47502 * 296.00648 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4601 0.0163 5 1 3.8747 0.4910 -0.2114 6 6 3.8668 2.4673 -1.0165 7 8 3.0370 3.0692 -1.6647 8 7 5.1787 2.6992 -1.2198 9 6 5.6057 3.5983 -2.2948 10 6 7.1330 3.6873 -2.3089 11 6 7.6330 4.1101 -0.9260 12 6 7.5762 4.7201 -3.3513 13 7 9.0407 4.6523 -3.4784 14 6 9.8082 5.7837 -3.4000 15 1 10.8338 5.7184 -3.0681 16 6 9.2679 7.0143 -3.7470 17 7 9.8535 8.1250 -3.3524 18 14 7.7097 7.0940 -4.7741 19 1 6.5326 7.2271 -3.8784 20 1 7.7752 8.2667 -5.6828 21 1 7.5822 5.8517 -5.5776 22 6 9.6560 3.3329 -3.6927 23 6 9.1115 2.3677 -2.6336 24 8 7.6826 2.4113 -2.6458 25 6 3.8903 1.9188 1.4017 26 6 3.2202 3.2504 1.7464 27 6 3.5002 0.8673 2.4424 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.8405 2.2677 -0.6570 34 1 5.2550 3.2124 -3.2520 35 1 5.1858 4.5901 -2.1272 36 1 7.3191 3.3744 -0.1856 37 1 8.7212 4.1728 -0.9366 38 1 7.2151 5.0838 -0.6707 39 1 7.1135 4.4938 -4.3120 40 1 7.2810 5.7182 -3.0278 41 1 9.4762 8.9850 -3.5952 42 1 9.4027 2.9669 -4.6878 43 1 10.7386 3.4125 -3.5949 44 1 9.4468 1.3549 -2.8572 45 1 9.4763 2.6630 -1.6498 46 1 4.9728 2.0460 1.4018 47 1 2.1413 3.1087 1.8089 48 1 3.5958 3.6088 2.7047 49 1 3.4461 3.9822 0.9708 50 1 3.9196 -0.0980 2.1584 51 1 3.8893 1.1595 3.4177 52 1 2.4141 0.7910 2.4925 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107937849.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:09 Heat of formation + Delta-G solvation = -128.235190 kcal Electronic energy + Delta-G solvation = -30470.622656 eV Core-core repulsion = 26470.325842 eV Total energy + Delta-G solvation = -4000.296813 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.50928 -40.67770 -38.90141 -36.70467 -36.12209 -35.71808 -33.65491 -33.26124 -32.04656 -30.01437 -28.98333 -28.08403 -28.03321 -26.51266 -25.32715 -23.67342 -22.90024 -22.22373 -20.99613 -20.66570 -19.09630 -18.65913 -17.88956 -17.70095 -17.27947 -16.86504 -16.55605 -16.23194 -16.08825 -15.83649 -15.62572 -15.41698 -15.31227 -14.96019 -14.69345 -14.33111 -14.18837 -13.94945 -13.79451 -13.50946 -13.31695 -13.23795 -13.08701 -13.07209 -13.02225 -12.92644 -12.71221 -12.39547 -12.34930 -12.24345 -12.08520 -12.00949 -11.90863 -11.65468 -11.59715 -11.27720 -11.07725 -11.04421 -10.53634 -10.31665 -10.16023 -8.95376 -8.21145 -5.54599 1.23369 1.35960 1.41485 1.54202 1.83838 2.34232 2.64257 2.86817 3.00005 3.20699 3.59599 3.69761 3.75867 3.83110 3.86719 3.90639 4.14349 4.20150 4.27158 4.28028 4.40992 4.42803 4.43809 4.50182 4.50539 4.56911 4.61250 4.66491 4.71461 4.80091 4.81943 4.83363 4.88161 4.94371 5.01569 5.03665 5.04809 5.12689 5.16233 5.27138 5.29432 5.35069 5.37609 5.43628 5.77508 6.07450 6.12823 6.22982 6.52734 6.80203 7.18856 7.52722 7.93931 8.98123 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.018465 B = 0.003112 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.980333 B = 8996.423533 C = 9292.377012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.044 3.956 3 O -0.378 6.378 4 C 0.083 3.917 5 H 0.116 0.884 6 C 0.504 3.496 7 O -0.575 6.575 8 N -0.703 5.703 9 C 0.143 3.857 10 C 0.103 3.897 11 C -0.158 4.158 12 C 0.102 3.898 13 N -0.616 5.616 14 C -0.239 4.239 15 H 0.065 0.935 16 C -0.028 4.028 17 N -0.953 5.953 18 Si 0.931 3.069 19 H -0.280 1.280 20 H -0.311 1.311 21 H -0.261 1.261 22 C 0.104 3.896 23 C 0.050 3.950 24 O -0.375 6.375 25 C -0.102 4.102 26 C -0.142 4.142 27 C -0.142 4.142 28 H 0.094 0.906 29 H 0.061 0.939 30 H 0.046 0.954 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.415 0.585 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.062 0.938 38 H 0.054 0.946 39 H 0.030 0.970 40 H 0.058 0.942 41 H 0.261 0.739 42 H 0.033 0.967 43 H 0.075 0.925 44 H 0.126 0.874 45 H 0.061 0.939 46 H 0.098 0.902 47 H 0.053 0.947 48 H 0.070 0.930 49 H 0.027 0.973 50 H 0.072 0.928 51 H 0.071 0.929 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.349 -21.790 12.543 28.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.032 4.032 3 O -0.296 6.296 4 C 0.021 3.979 5 H 0.134 0.866 6 C 0.291 3.709 7 O -0.453 6.453 8 N -0.358 5.358 9 C 0.018 3.982 10 C 0.062 3.938 11 C -0.216 4.216 12 C -0.024 4.024 13 N -0.342 5.342 14 C -0.368 4.368 15 H 0.082 0.918 16 C -0.224 4.224 17 N -0.599 5.599 18 Si 0.761 3.239 19 H -0.207 1.207 20 H -0.240 1.240 21 H -0.186 1.186 22 C -0.020 4.020 23 C -0.027 4.027 24 O -0.295 6.295 25 C -0.121 4.121 26 C -0.199 4.199 27 C -0.200 4.200 28 H 0.112 0.888 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.254 0.746 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.048 0.952 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.051 0.949 43 H 0.094 0.906 44 H 0.144 0.856 45 H 0.079 0.921 46 H 0.116 0.884 47 H 0.072 0.928 48 H 0.089 0.911 49 H 0.046 0.954 50 H 0.091 0.909 51 H 0.090 0.910 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.162 -21.232 12.012 27.719 hybrid contribution 0.105 1.045 -0.866 1.362 sum -13.057 -20.187 11.146 26.499 Atomic orbital electron populations 1.21749 0.93201 1.03357 1.02362 1.22912 0.96341 0.82614 1.01303 1.88022 1.18740 1.28147 1.94697 1.22103 0.83868 0.98178 0.93706 0.86641 1.21369 0.82056 0.83597 0.83916 1.90697 1.53122 1.50949 1.50569 1.45761 1.07096 1.47969 1.34997 1.21093 0.91431 0.94481 0.91235 1.21928 0.91704 0.84997 0.95189 1.22166 1.02547 1.01703 0.95170 1.21926 0.85367 0.98202 0.96878 1.44404 1.01131 1.03910 1.84707 1.18853 0.96440 0.84750 1.36781 0.91761 1.25757 1.00809 0.95250 1.00542 1.69896 1.43526 0.97720 1.48807 0.86199 0.81054 0.76625 0.80059 1.20670 1.23967 1.18592 1.21890 0.98129 0.84597 0.97424 1.23168 0.80091 1.00775 0.98691 1.87866 1.21256 1.29759 1.90585 1.21566 1.01176 0.96784 0.92597 1.21718 1.01127 0.96030 1.01044 1.21831 1.02000 0.97899 0.98224 0.88754 0.92006 0.93487 0.93143 0.90608 0.74621 0.91719 0.91256 0.89639 0.91900 0.92718 0.95180 0.92349 0.92935 0.94866 0.90629 0.85601 0.92121 0.88352 0.92772 0.91073 0.95380 0.90899 0.91048 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 10.28 71.98 0.74 -1.31 16 2 C 0.04 0.66 6.02 71.98 0.43 1.10 16 3 O -0.38 -8.51 8.42 -129.96 -1.09 -9.61 16 4 C 0.08 1.59 2.38 29.85 0.07 1.66 16 5 H 0.12 1.54 7.65 -2.39 -0.02 1.52 16 6 C 0.50 13.90 5.99 87.66 0.53 14.43 16 7 O -0.57 -21.81 16.51 15.97 0.26 -21.55 16 8 N -0.70 -17.42 5.12 -463.06 -2.37 -19.79 16 9 C 0.14 4.45 4.85 86.38 0.42 4.87 16 10 C 0.10 3.38 0.78 -10.70 -0.01 3.37 16 11 C -0.16 -4.75 7.87 71.98 0.57 -4.18 16 12 C 0.10 4.32 3.02 86.35 0.26 4.58 16 13 N -0.62 -27.81 2.36 -697.54 -1.65 -29.46 16 14 C -0.24 -13.02 10.12 84.03 0.85 -12.17 16 15 H 0.06 3.77 8.06 -2.91 -0.02 3.74 16 16 C -0.03 -1.64 5.30 84.86 0.45 -1.19 16 17 N -0.95 -59.08 13.97 21.65 0.30 -58.78 16 18 Si 0.93 47.01 24.29 68.60 1.67 48.67 16 19 H -0.28 -13.61 6.73 99.48 0.67 -12.94 16 20 H -0.31 -16.03 7.11 99.48 0.71 -15.32 16 21 H -0.26 -12.77 6.13 99.48 0.61 -12.16 16 22 C 0.10 3.71 6.74 86.35 0.58 4.29 16 23 C 0.05 1.36 6.60 72.08 0.48 1.84 16 24 O -0.38 -11.24 10.17 -148.98 -1.52 -12.75 16 25 C -0.10 -1.53 2.72 -10.79 -0.03 -1.56 16 26 C -0.14 -2.81 8.82 71.98 0.63 -2.17 16 27 C -0.14 -1.45 8.15 71.98 0.59 -0.86 16 28 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.08 0.75 6.68 -2.39 -0.02 0.74 16 33 H 0.42 7.84 6.43 -92.71 -0.60 7.24 16 34 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.08 1.88 6.58 -2.39 -0.02 1.86 16 37 H 0.06 2.12 6.12 -2.38 -0.01 2.11 16 38 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.03 1.32 6.64 -2.38 -0.02 1.31 16 40 H 0.06 2.73 4.58 -2.39 -0.01 2.72 16 41 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 42 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 43 H 0.08 2.61 7.96 -2.39 -0.02 2.59 16 44 H 0.13 2.53 8.14 -2.38 -0.02 2.51 16 45 H 0.06 1.62 6.26 -2.38 -0.01 1.61 16 46 H 0.10 1.17 7.56 -2.39 -0.02 1.15 16 47 H 0.05 1.17 7.74 -2.39 -0.02 1.16 16 48 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 49 H 0.03 0.70 7.17 -2.39 -0.02 0.68 16 50 H 0.07 0.50 8.14 -2.38 -0.02 0.48 16 51 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 52 H 0.06 0.67 7.03 -2.39 -0.02 0.65 16 Total: -1.00 -74.26 392.92 2.33 -71.93 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: 0.17 Total: 18.65 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: 6.56 Total: 12.68 kcal Atomic # 7 Polarization: -104.30 SS G_CDS: -3.71 Total: -108.02 kcal Atomic # 8 Polarization: -41.56 SS G_CDS: -2.35 Total: -43.91 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 1.67 Total: 48.67 kcal Total: -74.26 2.33 -71.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107937849.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.304 kcal (2) G-P(sol) polarization free energy of solvation -74.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds