Wall clock time and date at job start Tue Mar 31 2020 04:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42900 * 109.46910 * 2 1 4 4 C 1.42902 * 113.99622 * 185.19013 * 3 2 1 5 5 H 1.09000 * 109.47202 * 342.53250 * 4 3 2 6 6 C 1.50699 * 109.46785 * 222.53760 * 4 3 2 7 7 O 1.21282 * 120.00325 * 351.38802 * 6 4 3 8 8 N 1.34781 * 120.00246 * 171.39576 * 6 4 3 9 9 C 1.46499 * 120.00369 * 174.57982 * 8 6 4 10 10 C 1.52999 * 109.47244 * 179.97438 * 9 8 6 11 11 C 1.53001 * 109.55147 * 60.12562 * 10 9 8 12 12 C 1.53291 * 109.51384 * 180.25339 * 10 9 8 13 13 N 1.47221 * 108.40487 * 172.23126 * 12 10 9 14 14 C 1.36933 * 121.03161 * 129.46379 * 13 12 10 15 15 H 1.07996 * 120.00338 * 324.97743 * 14 13 12 16 16 C 1.38813 * 120.00127 * 144.97710 * 14 13 12 17 17 N 1.31627 * 119.99852 * 168.58548 * 16 14 13 18 18 Si 1.86801 * 120.00175 * 348.59026 * 16 14 13 19 19 H 1.48495 * 109.47192 * 85.23454 * 18 16 14 20 20 H 1.48497 * 109.47090 * 205.23958 * 18 16 14 21 21 H 1.48507 * 109.46509 * 325.23545 * 18 16 14 22 22 C 1.47158 * 117.98960 * 309.48530 * 13 12 10 23 23 C 1.53298 * 108.41088 * 50.52162 * 22 13 12 24 24 O 1.42959 * 109.22271 * 307.67786 * 23 22 13 25 25 C 1.52997 * 109.47213 * 102.53401 * 4 3 2 26 26 C 1.52992 * 109.47329 * 295.85443 * 25 4 3 27 27 C 1.53002 * 109.46987 * 55.85505 * 25 4 3 28 28 H 1.09004 * 109.47002 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46686 * 299.99956 * 1 2 3 30 30 H 1.08992 * 109.47207 * 60.00002 * 1 2 3 31 31 H 1.09004 * 109.46686 * 240.00044 * 2 1 3 32 32 H 1.08998 * 109.47037 * 120.00406 * 2 1 3 33 33 H 0.97008 * 119.99461 * 354.57723 * 8 6 4 34 34 H 1.09000 * 109.46587 * 59.99987 * 9 8 6 35 35 H 1.08995 * 109.46937 * 300.00294 * 9 8 6 36 36 H 1.09003 * 109.47614 * 299.87202 * 11 10 9 37 37 H 1.09007 * 109.47045 * 59.87431 * 11 10 9 38 38 H 1.09000 * 109.47463 * 179.87179 * 11 10 9 39 39 H 1.09003 * 109.68054 * 291.95117 * 12 10 9 40 40 H 1.09003 * 109.67865 * 52.50399 * 12 10 9 41 41 H 0.97006 * 119.99651 * 180.02562 * 17 16 14 42 42 H 1.08992 * 109.67890 * 290.78060 * 22 13 12 43 43 H 1.08995 * 109.68410 * 170.25868 * 22 13 12 44 44 H 1.08996 * 109.51584 * 67.60646 * 23 22 13 45 45 H 1.09004 * 109.50822 * 187.71166 * 23 22 13 46 46 H 1.09008 * 109.46872 * 175.85004 * 25 4 3 47 47 H 1.08995 * 109.47361 * 66.22687 * 26 25 4 48 48 H 1.08997 * 109.47127 * 186.23257 * 26 25 4 49 49 H 1.09005 * 109.46931 * 306.22769 * 26 25 4 50 50 H 1.09001 * 109.47218 * 65.18527 * 27 25 4 51 51 H 1.08997 * 109.46797 * 185.18518 * 27 25 4 52 52 H 1.08997 * 109.47178 * 305.18689 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4259 1.4619 -0.1181 5 1 3.8890 0.5050 0.1230 6 6 3.9257 2.5162 0.8356 7 8 3.1364 3.2185 1.4312 8 7 5.2500 2.6790 1.0265 9 6 5.7401 3.7793 1.8603 10 6 7.2686 3.7376 1.9131 11 6 7.8339 3.8832 0.4988 12 6 7.7822 4.8848 2.7905 13 7 9.2323 4.7132 2.9781 14 6 10.1013 5.7456 2.7452 15 1 9.9037 6.4488 1.9497 16 6 11.2361 5.8884 3.5317 17 7 12.1813 6.7327 3.1761 18 14 11.4221 4.8825 5.0947 19 1 11.9985 3.5547 4.7631 20 1 12.3244 5.5928 6.0361 21 1 10.0909 4.7003 5.7272 22 6 9.7204 3.3982 3.4230 23 6 9.1123 2.3234 2.5147 24 8 7.6933 2.4917 2.4710 25 6 3.7882 1.8571 -1.5510 26 6 3.3729 0.7389 -2.5090 27 6 3.0556 3.1473 -1.9249 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 5.8785 2.0674 0.6118 34 1 5.3392 3.6774 2.8688 35 1 5.4167 4.7293 1.4351 36 1 7.4720 3.0647 -0.1233 37 1 7.5097 4.8333 0.0740 38 1 8.9229 3.8556 0.5381 39 1 7.5860 5.8383 2.3001 40 1 7.2814 4.8592 3.7583 41 1 12.9745 6.8322 3.7255 42 1 9.4147 3.2230 4.4544 43 1 10.8075 3.3667 3.3519 44 1 9.5218 2.4220 1.5094 45 1 9.3505 1.3357 2.9096 46 1 4.8642 2.0164 -1.6230 47 1 2.2863 0.6542 -2.5195 48 1 3.7291 0.9696 -3.5130 49 1 3.8076 -0.2040 -2.1771 50 1 3.4192 3.9650 -1.3026 51 1 3.2404 3.3790 -2.9738 52 1 1.9854 3.0169 -1.7647 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107937850.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:13 Heat of formation + Delta-G solvation = -109.277633 kcal Electronic energy + Delta-G solvation = -30170.635361 eV Core-core repulsion = 26171.160610 eV Total energy + Delta-G solvation = -3999.474752 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.38810 -39.36061 -37.96569 -35.23992 -35.02230 -34.42324 -32.14878 -31.49722 -31.41560 -28.48843 -27.99883 -27.42413 -26.44745 -25.35224 -23.18741 -23.04264 -21.79055 -21.11973 -20.15358 -19.09216 -17.73896 -17.00940 -16.95794 -16.45869 -15.97313 -15.56180 -15.44059 -15.20074 -14.64763 -14.55358 -14.26880 -14.12911 -13.97118 -13.85316 -13.49928 -13.33966 -12.76433 -12.68707 -12.62242 -12.47365 -12.35876 -12.30026 -12.26645 -11.87022 -11.68790 -11.61259 -11.46550 -11.40733 -11.24424 -11.03178 -10.94972 -10.84573 -10.42989 -10.38997 -10.13208 -9.73636 -9.64405 -9.41308 -9.34042 -8.98804 -8.63672 -6.94275 -6.03098 -3.51226 2.60694 2.80704 3.23672 3.41755 3.44968 3.68638 4.00331 4.39783 4.44029 4.47138 4.61658 4.73573 4.74898 4.83116 4.90998 5.04895 5.08279 5.14322 5.20344 5.26829 5.28213 5.33930 5.36201 5.43796 5.55258 5.61613 5.64982 5.70359 5.73932 5.78913 5.80224 5.83973 5.85671 5.94883 5.96957 6.05429 6.18434 6.19746 6.22816 6.43171 6.46686 6.48874 6.53176 6.69995 6.84345 7.52890 7.58841 7.89966 8.23903 8.25466 8.80773 9.60010 9.99621 11.12348 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.026234 B = 0.002649 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.077042 B =10567.009993 C =10810.588126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.050 3.950 3 O -0.350 6.350 4 C 0.078 3.922 5 H 0.084 0.916 6 C 0.509 3.491 7 O -0.523 6.523 8 N -0.717 5.717 9 C 0.140 3.860 10 C 0.087 3.913 11 C -0.166 4.166 12 C 0.130 3.870 13 N -0.604 5.604 14 C -0.263 4.263 15 H 0.085 0.915 16 C 0.028 3.972 17 N -0.910 5.910 18 Si 0.894 3.106 19 H -0.286 1.286 20 H -0.303 1.303 21 H -0.271 1.271 22 C 0.087 3.913 23 C 0.046 3.954 24 O -0.380 6.380 25 C -0.106 4.106 26 C -0.148 4.148 27 C -0.143 4.143 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.402 0.598 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.047 0.953 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.034 0.966 41 H 0.264 0.736 42 H 0.033 0.967 43 H 0.081 0.919 44 H 0.055 0.945 45 H 0.084 0.916 46 H 0.083 0.917 47 H 0.061 0.939 48 H 0.061 0.939 49 H 0.054 0.946 50 H 0.055 0.945 51 H 0.055 0.945 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.240 -15.451 -10.552 25.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.268 6.268 4 C 0.017 3.983 5 H 0.102 0.898 6 C 0.293 3.707 7 O -0.398 6.398 8 N -0.371 5.371 9 C 0.016 3.984 10 C 0.046 3.954 11 C -0.224 4.224 12 C 0.004 3.996 13 N -0.329 5.329 14 C -0.391 4.391 15 H 0.103 0.897 16 C -0.171 4.171 17 N -0.553 5.553 18 Si 0.724 3.276 19 H -0.213 1.213 20 H -0.231 1.231 21 H -0.196 1.196 22 C -0.039 4.039 23 C -0.032 4.032 24 O -0.300 6.300 25 C -0.125 4.125 26 C -0.205 4.205 27 C -0.200 4.200 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.237 0.763 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.052 0.948 41 H 0.074 0.926 42 H 0.051 0.949 43 H 0.099 0.901 44 H 0.074 0.926 45 H 0.102 0.898 46 H 0.101 0.899 47 H 0.080 0.920 48 H 0.080 0.920 49 H 0.073 0.927 50 H 0.074 0.926 51 H 0.074 0.926 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.906 -14.782 -9.999 25.280 hybrid contribution 1.097 -0.898 0.701 1.581 sum -16.809 -15.680 -9.298 24.796 Atomic orbital electron populations 1.21721 0.93522 1.02119 1.03363 1.22706 0.95942 0.83879 1.00170 1.88041 1.18589 1.25971 1.94210 1.21975 0.83974 0.97987 0.94399 0.89841 1.20480 0.82470 0.85139 0.82577 1.90715 1.55087 1.46216 1.47781 1.45872 1.06553 1.32615 1.52067 1.21343 0.91592 0.89749 0.95724 1.22234 0.92004 0.87104 0.94085 1.22255 1.03531 1.01335 0.95258 1.21507 0.85681 0.95785 0.96668 1.44259 1.00945 1.07557 1.80169 1.18845 1.02114 1.05614 1.12573 0.89721 1.25461 0.97219 0.96836 0.97621 1.69759 1.08486 1.37896 1.39126 0.86836 0.77540 0.78704 0.84492 1.21348 1.23074 1.19591 1.22086 0.99315 0.86299 0.96159 1.23080 0.81117 0.98887 1.00114 1.87839 1.22417 1.36309 1.83385 1.21518 1.00934 0.97236 0.92831 1.21894 1.02032 0.97437 0.99174 1.21726 1.01554 0.95895 1.00844 0.91152 0.91638 0.91836 0.92904 0.93391 0.76267 0.90753 0.90059 0.93388 0.91724 0.90302 0.90770 0.94843 0.92582 0.94897 0.90140 0.92631 0.89779 0.89880 0.91954 0.92000 0.92730 0.92615 0.92633 0.91427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.28 37.16 0.38 -0.69 16 2 C 0.05 0.41 6.01 37.16 0.22 0.63 16 3 O -0.35 -4.03 8.34 -54.99 -0.46 -4.49 16 4 C 0.08 0.81 2.37 -27.88 -0.07 0.74 16 5 H 0.08 0.69 7.68 -51.93 -0.40 0.29 16 6 C 0.51 6.88 6.17 -10.98 -0.07 6.81 16 7 O -0.52 -9.30 16.53 -14.21 -0.23 -9.53 16 8 N -0.72 -8.88 5.15 -60.30 -0.31 -9.19 16 9 C 0.14 2.00 4.82 -4.04 -0.02 1.98 16 10 C 0.09 1.37 0.76 -90.47 -0.07 1.30 16 11 C -0.17 -2.42 7.92 37.16 0.29 -2.13 16 12 C 0.13 2.50 5.41 -3.50 -0.02 2.48 16 13 N -0.60 -13.77 2.26 -171.77 -0.39 -14.16 16 14 C -0.26 -7.07 10.08 -15.06 -0.15 -7.22 16 15 H 0.09 2.44 8.06 -52.49 -0.42 2.02 16 16 C 0.03 0.80 5.35 -17.43 -0.09 0.71 16 17 N -0.91 -27.27 13.97 55.49 0.78 -26.49 16 18 Si 0.89 22.11 24.26 -169.99 -4.12 17.98 16 19 H -0.29 -6.71 6.48 56.52 0.37 -6.34 16 20 H -0.30 -7.66 7.11 56.52 0.40 -7.25 16 21 H -0.27 -6.70 6.63 56.52 0.37 -6.33 16 22 C 0.09 1.82 4.36 -3.53 -0.02 1.80 16 23 C 0.05 0.77 6.60 37.31 0.25 1.02 16 24 O -0.38 -6.30 9.97 -35.23 -0.35 -6.65 16 25 C -0.11 -0.91 2.75 -90.62 -0.25 -1.16 16 26 C -0.15 -0.99 7.96 37.15 0.30 -0.69 16 27 C -0.14 -1.41 8.80 37.16 0.33 -1.09 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.34 6.23 -51.93 -0.32 0.02 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.40 4.26 7.21 -40.82 -0.29 3.96 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.05 0.57 6.88 -51.93 -0.36 0.22 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.08 1.35 6.11 -51.93 -0.32 1.03 16 39 H 0.07 1.40 7.96 -51.93 -0.41 0.98 16 40 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.03 0.71 6.71 -51.93 -0.35 0.36 16 43 H 0.08 1.79 5.04 -51.93 -0.26 1.53 16 44 H 0.06 0.91 6.25 -51.93 -0.32 0.58 16 45 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 47 H 0.06 0.43 6.96 -51.93 -0.36 0.07 16 48 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.05 0.31 8.10 -51.93 -0.42 -0.11 16 50 H 0.05 0.65 7.53 -51.93 -0.39 0.26 16 51 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 52 H 0.07 0.73 7.41 -51.93 -0.38 0.35 16 LS Contribution 394.49 15.07 5.94 5.94 Total: -1.00 -32.62 394.49 -7.42 -40.04 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -9.29 Total: 2.04 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: 1.02 Total: 4.49 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: 0.08 Total: -49.84 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -1.04 Total: -20.67 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.12 Total: 17.98 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.62 -7.42 -40.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107937850.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.239 kcal (2) G-P(sol) polarization free energy of solvation -32.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds