Wall clock time and date at job start Tue Mar 31 2020 04:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08994 * 109.47408 * 2 1 4 4 C 1.53000 * 109.47169 * 239.99821 * 2 1 3 5 5 N 1.46900 * 109.47357 * 185.00153 * 4 2 1 6 6 C 1.46952 * 111.00172 * 293.80300 * 5 4 2 7 7 C 1.53048 * 109.36847 * 176.81228 * 6 5 4 8 8 N 1.46956 * 109.36433 * 58.39744 * 7 6 5 9 9 C 1.46904 * 110.99401 * 176.81574 * 8 7 6 10 10 C 1.46956 * 110.88051 * 300.68129 * 8 7 6 11 11 C 1.46956 * 111.00034 * 170.00056 * 5 4 2 12 12 N 1.46900 * 109.47082 * 120.00220 * 2 1 3 13 13 C 1.46903 * 111.00131 * 275.00245 * 12 2 1 14 14 C 1.52998 * 109.47302 * 180.02562 * 13 12 2 15 15 H 1.08992 * 109.47135 * 59.99463 * 14 13 12 16 16 O 1.42897 * 109.46674 * 299.99470 * 14 13 12 17 17 C 1.53004 * 109.46799 * 179.97438 * 14 13 12 18 18 N 1.46898 * 109.46619 * 184.99872 * 17 14 13 19 19 C 1.46901 * 111.00443 * 66.04574 * 18 17 14 20 20 C 1.46906 * 110.99820 * 189.99887 * 18 17 14 21 21 C 1.50696 * 109.47351 * 169.99890 * 20 18 17 22 22 H 1.08007 * 119.99780 * 0.02562 * 21 20 18 23 23 C 1.37878 * 120.00506 * 180.02562 * 21 20 18 24 24 N 1.31510 * 120.00248 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 119.99357 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.46811 * 90.00524 * 25 23 21 27 27 H 1.48502 * 109.46643 * 209.99901 * 25 23 21 28 28 H 1.48499 * 109.47300 * 329.99977 * 25 23 21 29 29 H 1.09003 * 109.47623 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47611 * 300.00075 * 1 2 3 31 31 H 1.09001 * 109.47263 * 59.99554 * 1 2 3 32 32 H 1.09000 * 109.47580 * 305.00310 * 4 2 1 33 33 H 1.09006 * 109.47177 * 65.00362 * 4 2 1 34 34 H 1.09004 * 109.49185 * 296.78095 * 6 5 4 35 35 H 1.09005 * 109.49003 * 56.84070 * 6 5 4 36 36 H 1.09003 * 109.48433 * 298.43264 * 7 6 5 37 37 H 1.09002 * 109.50692 * 178.38159 * 7 6 5 38 38 H 1.09009 * 109.46419 * 183.79796 * 9 8 7 39 39 H 1.08996 * 109.47559 * 303.79601 * 9 8 7 40 40 H 1.09001 * 109.47370 * 63.80405 * 9 8 7 41 41 H 1.08996 * 109.48893 * 299.35579 * 10 8 7 42 42 H 1.08998 * 109.50623 * 179.29829 * 10 8 7 43 43 H 1.09000 * 109.48852 * 303.15398 * 11 5 4 44 44 H 1.09001 * 109.49137 * 63.20146 * 11 5 4 45 45 H 1.00904 * 111.00509 * 151.04084 * 12 2 1 46 46 H 1.08996 * 109.47237 * 59.99345 * 13 12 2 47 47 H 1.09009 * 109.46499 * 299.99967 * 13 12 2 48 48 H 0.96701 * 114.00549 * 300.00026 * 16 14 13 49 49 H 1.08994 * 109.47270 * 64.99737 * 17 14 13 50 50 H 1.08999 * 109.47017 * 304.99614 * 17 14 13 51 51 H 1.09002 * 109.47401 * 183.95136 * 19 18 17 52 52 H 1.09001 * 109.46874 * 63.95149 * 19 18 17 53 53 H 1.09004 * 109.46970 * 303.95282 * 19 18 17 54 54 H 1.08997 * 109.46995 * 289.99871 * 20 18 17 55 55 H 1.09001 * 109.46848 * 49.99877 * 20 18 17 56 56 H 0.96999 * 119.99895 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 3.5040 -0.8268 -1.1904 6 6 4.1314 0.4994 -1.2756 7 6 5.6480 0.3535 -1.1312 8 7 6.1549 -0.5345 -2.1866 9 6 7.6190 -0.6400 -2.1277 10 6 5.5275 -1.8607 -2.1013 11 6 4.0108 -1.7148 -2.2459 12 7 2.0196 -0.6925 1.1994 13 6 2.0823 0.2225 2.3470 14 6 2.5961 -0.5330 3.5742 15 1 3.5915 -0.9264 3.3683 16 8 1.7097 -1.6130 3.8741 17 6 2.6620 0.4203 4.7692 18 7 3.2668 -0.2721 5.9149 19 6 4.6744 -0.5982 5.6499 20 6 3.1330 0.5246 7.1419 21 6 3.5374 -0.3102 8.3296 22 1 3.8618 -1.3305 8.1871 23 6 3.4932 0.2284 9.5980 24 7 3.8466 -0.5000 10.6344 25 14 2.9328 1.9933 9.8442 26 1 1.4624 2.0215 10.0501 27 1 3.6104 2.5662 11.0350 28 1 3.2801 2.7950 8.6435 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.6053 -1.7198 -1.2952 33 1 1.7516 -0.1583 -2.1370 34 1 3.8997 0.9500 -2.2407 35 1 3.7493 1.1345 -0.4764 36 1 5.8810 -0.0718 -0.1550 37 1 6.1182 1.3327 -1.2228 38 1 7.9731 -1.2484 -2.9599 39 1 8.0579 0.3556 -2.1928 40 1 7.9122 -1.1055 -1.1867 41 1 5.7592 -2.3112 -1.1362 42 1 5.9095 -2.4961 -2.9003 43 1 3.5409 -2.6940 -2.1539 44 1 3.7775 -1.2897 -3.2220 45 1 2.9172 -1.1207 1.0287 46 1 1.0870 0.6162 2.5525 47 1 2.7588 1.0461 2.1182 48 1 0.8037 -1.3361 4.0681 49 1 1.6550 0.7448 5.0310 50 1 3.2673 1.2884 4.5084 51 1 5.0780 -1.1714 6.4846 52 1 5.2449 0.3232 5.5323 53 1 4.7449 -1.1883 4.7361 54 1 3.7773 1.4014 7.0778 55 1 2.0968 0.8428 7.2573 56 1 3.8152 -0.1212 11.5268 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118087740.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:32 Heat of formation + Delta-G solvation = -51.520333 kcal Electronic energy + Delta-G solvation = -29573.901252 eV Core-core repulsion = 25745.056890 eV Total energy + Delta-G solvation = -3828.844362 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 328.258 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.54282 -39.55415 -38.10029 -36.96099 -35.47175 -34.59758 -32.53039 -31.94811 -30.67781 -29.52958 -29.17826 -27.25574 -26.27654 -24.89890 -24.61313 -23.91179 -22.47146 -21.84493 -21.15435 -20.64350 -19.02613 -17.54500 -17.35691 -17.10848 -16.81925 -16.44993 -16.08591 -16.04493 -15.96348 -15.85224 -15.65991 -15.52834 -15.21902 -14.91694 -14.65746 -14.49760 -14.08363 -13.70387 -13.50169 -13.44336 -13.27457 -13.22113 -12.94372 -12.91813 -12.74560 -12.55028 -12.52000 -12.43908 -12.37982 -12.27225 -12.24949 -12.09104 -11.91402 -11.72884 -11.59312 -11.47735 -11.36410 -10.78586 -10.62069 -9.47954 -9.31371 -9.16531 -8.96246 -8.28092 -6.31859 1.34013 1.35981 1.46457 2.34182 2.78652 2.94501 2.98219 3.05048 3.44804 3.76313 3.84545 3.85351 3.94975 4.03977 4.15131 4.18697 4.26640 4.31168 4.35855 4.38666 4.41906 4.46809 4.50194 4.54969 4.58992 4.62707 4.63148 4.66537 4.68062 4.77287 4.80247 4.86360 4.86947 4.87913 4.95903 4.97857 5.00480 5.00934 5.03579 5.13237 5.14055 5.25644 5.42885 5.52562 5.89779 5.92432 5.98199 6.09394 6.10429 6.24735 6.35448 6.62402 6.67374 6.74752 7.09456 7.31627 8.88860 Molecular weight = 328.26amu Principal moments of inertia in cm(-1) A = 0.014741 B = 0.002405 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.030245 B =11640.979994 C =12713.169522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.091 3.909 3 H 0.038 0.962 4 C 0.060 3.940 5 N -0.549 5.549 6 C 0.060 3.940 7 C 0.057 3.943 8 N -0.553 5.553 9 C 0.024 3.976 10 C 0.056 3.944 11 C 0.062 3.938 12 N -0.675 5.675 13 C 0.042 3.958 14 C 0.129 3.871 15 H 0.082 0.918 16 O -0.555 6.555 17 C 0.023 3.977 18 N -0.540 5.540 19 C 0.043 3.957 20 C 0.172 3.828 21 C -0.517 4.517 22 H 0.034 0.966 23 C 0.005 3.995 24 N -0.949 5.949 25 Si 0.951 3.049 26 H -0.263 1.263 27 H -0.282 1.282 28 H -0.251 1.251 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.048 0.952 34 H 0.041 0.959 35 H 0.076 0.924 36 H 0.030 0.970 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.022 0.978 41 H 0.032 0.968 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.041 0.959 45 H 0.350 0.650 46 H 0.079 0.921 47 H 0.037 0.963 48 H 0.378 0.622 49 H 0.078 0.922 50 H 0.039 0.961 51 H 0.044 0.956 52 H 0.019 0.981 53 H 0.074 0.926 54 H -0.013 1.013 55 H 0.029 0.971 56 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.154 4.337 -32.809 33.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.020 4.020 3 H 0.056 0.944 4 C -0.068 4.068 5 N -0.274 5.274 6 C -0.068 4.068 7 C -0.072 4.072 8 N -0.278 5.278 9 C -0.124 4.124 10 C -0.072 4.072 11 C -0.065 4.065 12 N -0.309 5.309 13 C -0.089 4.089 14 C 0.068 3.932 15 H 0.100 0.900 16 O -0.360 6.360 17 C -0.106 4.106 18 N -0.264 5.264 19 C -0.105 4.105 20 C 0.045 3.955 21 C -0.556 4.556 22 H 0.052 0.948 23 C -0.192 4.192 24 N -0.590 5.590 25 Si 0.774 3.226 26 H -0.188 1.188 27 H -0.207 1.207 28 H -0.175 1.175 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.094 0.906 36 H 0.048 0.952 37 H 0.104 0.896 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.041 0.959 41 H 0.050 0.950 42 H 0.109 0.891 43 H 0.106 0.894 44 H 0.060 0.940 45 H 0.171 0.829 46 H 0.097 0.903 47 H 0.055 0.945 48 H 0.225 0.775 49 H 0.096 0.904 50 H 0.057 0.943 51 H 0.063 0.937 52 H 0.037 0.963 53 H 0.092 0.908 54 H 0.004 0.996 55 H 0.047 0.953 56 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.450 3.290 -32.506 32.705 hybrid contribution 0.830 2.051 0.679 2.315 sum -0.620 5.341 -31.827 32.278 Atomic orbital electron populations 1.21739 0.93858 1.02250 1.01583 1.21515 0.95908 0.95281 0.89259 0.94363 1.22251 0.86616 1.01574 0.96384 1.62034 1.05952 1.11583 1.47860 1.22136 0.93663 0.90425 1.00579 1.22160 0.94832 0.97597 0.92570 1.62230 1.06710 1.11883 1.46993 1.22388 0.86591 1.02703 1.00672 1.22199 0.94060 0.90111 1.00830 1.22126 0.94432 0.97479 0.92507 1.60390 1.34875 1.32157 1.03430 1.22517 1.01174 0.93895 0.91283 1.21726 0.93828 0.87006 0.90603 0.90044 1.86577 1.23736 1.33750 1.91938 1.22890 1.00250 0.95598 0.91850 1.61730 1.16661 1.45408 1.02605 1.22177 0.88277 0.99183 1.00886 1.19956 0.95674 0.91542 0.88320 1.21278 1.43780 0.99290 0.91213 0.94760 1.25899 0.95121 1.02772 0.95400 1.70060 1.50308 1.39163 0.99493 0.85664 0.79192 0.79353 0.78387 1.18809 1.20727 1.17468 0.92394 0.93012 0.91525 0.89895 0.93410 0.94108 0.90559 0.95191 0.89626 0.90354 0.90778 0.95950 0.94991 0.89068 0.89353 0.94033 0.82880 0.90304 0.94485 0.77468 0.90350 0.94291 0.93714 0.96285 0.90787 0.99553 0.95256 0.92418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.41 71.98 0.68 -1.26 16 2 C 0.09 1.40 2.43 44.91 0.11 1.51 16 3 H 0.04 0.60 6.39 -2.39 -0.02 0.59 16 4 C 0.06 0.82 4.59 86.30 0.40 1.22 16 5 N -0.55 -8.23 3.54 -895.71 -3.17 -11.40 16 6 C 0.06 0.88 5.41 86.31 0.47 1.35 16 7 C 0.06 0.87 5.62 86.31 0.49 1.35 16 8 N -0.55 -8.32 4.97 -921.93 -4.58 -12.90 16 9 C 0.02 0.30 9.60 127.69 1.23 1.53 16 10 C 0.06 0.79 5.62 86.31 0.49 1.28 16 11 C 0.06 0.85 5.61 86.31 0.48 1.33 16 12 N -0.67 -13.37 6.18 -491.58 -3.04 -16.40 16 13 C 0.04 0.86 5.15 86.30 0.44 1.30 16 14 C 0.13 3.47 3.13 30.60 0.10 3.57 16 15 H 0.08 2.37 6.26 -2.39 -0.01 2.36 16 16 O -0.55 -17.16 13.15 -148.98 -1.96 -19.12 16 17 C 0.02 0.72 4.60 86.30 0.40 1.12 16 18 N -0.54 -22.85 4.70 -927.04 -4.36 -27.20 16 19 C 0.04 1.72 9.17 127.69 1.17 2.89 16 20 C 0.17 8.40 3.79 85.55 0.32 8.73 16 21 C -0.52 -30.78 9.07 25.60 0.23 -30.55 16 22 H 0.03 2.30 7.35 -2.91 -0.02 2.28 16 23 C 0.01 0.30 5.47 84.66 0.46 0.76 16 24 N -0.95 -60.49 13.96 21.45 0.30 -60.20 16 25 Si 0.95 44.40 27.47 68.60 1.88 46.28 16 26 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 27 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 28 H -0.25 -10.89 6.54 99.48 0.65 -10.24 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.05 0.79 7.45 -2.38 -0.02 0.78 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.08 1.20 8.03 -2.39 -0.02 1.18 16 33 H 0.05 0.59 8.12 -2.38 -0.02 0.57 16 34 H 0.04 0.61 8.14 -2.39 -0.02 0.60 16 35 H 0.08 1.13 6.45 -2.38 -0.02 1.12 16 36 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.09 1.16 8.13 -2.39 -0.02 1.14 16 38 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 39 H 0.07 0.82 8.13 -2.39 -0.02 0.80 16 40 H 0.02 0.30 8.14 -2.39 -0.02 0.28 16 41 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.09 1.08 8.07 -2.39 -0.02 1.06 16 44 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 45 H 0.35 7.69 7.36 -89.69 -0.66 7.03 16 46 H 0.08 1.52 7.44 -2.39 -0.02 1.50 16 47 H 0.04 0.72 8.06 -2.38 -0.02 0.70 16 48 H 0.38 9.56 9.05 -74.06 -0.67 8.89 16 49 H 0.08 2.33 7.93 -2.39 -0.02 2.31 16 50 H 0.04 1.15 8.12 -2.39 -0.02 1.13 16 51 H 0.04 2.06 6.86 -2.39 -0.02 2.05 16 52 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 53 H 0.07 2.55 6.21 -2.38 -0.01 2.53 16 54 H -0.01 -0.64 7.18 -2.39 -0.02 -0.65 16 55 H 0.03 1.39 7.36 -2.39 -0.02 1.37 16 56 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -69.85 423.04 -8.01 -77.86 By element: Atomic # 1 Polarization: 27.50 SS G_CDS: -0.55 Total: 26.95 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: 7.46 Total: -3.87 kcal Atomic # 7 Polarization: -113.26 SS G_CDS: -14.84 Total: -128.10 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -1.96 Total: -19.12 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.88 Total: 46.28 kcal Total: -69.85 -8.01 -77.86 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118087740.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.342 kcal (2) G-P(sol) polarization free energy of solvation -69.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds