Wall clock time and date at job start Tue Mar 31 2020 04:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08994 * 109.47193 * 2 1 4 4 C 1.53002 * 109.46657 * 120.00020 * 2 1 3 5 5 N 1.46910 * 109.46774 * 175.66278 * 4 2 1 6 6 C 1.46953 * 110.99866 * 199.49530 * 5 4 2 7 7 C 1.53050 * 109.36419 * 176.81005 * 6 5 4 8 8 N 1.46959 * 109.36216 * 58.40453 * 7 6 5 9 9 C 1.46898 * 110.99703 * 176.81270 * 8 7 6 10 10 C 1.46961 * 110.87706 * 300.67779 * 8 7 6 11 11 C 1.46957 * 110.99676 * 75.69604 * 5 4 2 12 12 N 1.46903 * 109.46894 * 239.99566 * 2 1 3 13 13 C 1.46902 * 110.99804 * 85.00364 * 12 2 1 14 14 C 1.52993 * 109.46957 * 179.97438 * 13 12 2 15 15 H 1.09003 * 109.47280 * 60.00491 * 14 13 12 16 16 O 1.42896 * 109.47538 * 300.00150 * 14 13 12 17 17 C 1.53001 * 109.47252 * 180.02562 * 14 13 12 18 18 N 1.46897 * 109.47436 * 185.00510 * 17 14 13 19 19 C 1.46897 * 111.00175 * 66.04467 * 18 17 14 20 20 C 1.46901 * 111.00001 * 189.99979 * 18 17 14 21 21 C 1.50704 * 109.47105 * 169.99566 * 20 18 17 22 22 H 1.07998 * 119.99802 * 359.97438 * 21 20 18 23 23 C 1.37878 * 119.99875 * 180.02562 * 21 20 18 24 24 N 1.31509 * 119.99894 * 180.02562 * 23 21 20 25 25 Si 1.86805 * 120.00005 * 359.97438 * 23 21 20 26 26 H 1.48503 * 109.46783 * 90.00406 * 25 23 21 27 27 H 1.48501 * 109.47213 * 210.00284 * 25 23 21 28 28 H 1.48501 * 109.47359 * 330.00173 * 25 23 21 29 29 H 1.08998 * 109.46445 * 60.00205 * 1 2 3 30 30 H 1.08994 * 109.47193 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46967 * 300.00132 * 1 2 3 32 32 H 1.09003 * 109.47076 * 295.65823 * 4 2 1 33 33 H 1.08999 * 109.47502 * 55.66413 * 4 2 1 34 34 H 1.08998 * 109.48997 * 296.78101 * 6 5 4 35 35 H 1.09005 * 109.48940 * 56.84139 * 6 5 4 36 36 H 1.08997 * 109.48790 * 298.43600 * 7 6 5 37 37 H 1.09001 * 109.50714 * 178.37810 * 7 6 5 38 38 H 1.09009 * 109.46710 * 183.79467 * 9 8 7 39 39 H 1.08997 * 109.46896 * 303.79365 * 9 8 7 40 40 H 1.09005 * 109.47203 * 63.79744 * 9 8 7 41 41 H 1.08998 * 109.49006 * 299.35237 * 10 8 7 42 42 H 1.09001 * 109.50054 * 179.30216 * 10 8 7 43 43 H 1.08991 * 109.48934 * 303.15025 * 11 5 4 44 44 H 1.08995 * 109.48940 * 63.20132 * 11 5 4 45 45 H 1.00896 * 110.99944 * 321.04596 * 12 2 1 46 46 H 1.09003 * 109.46724 * 59.99686 * 13 12 2 47 47 H 1.08999 * 109.47122 * 299.99676 * 13 12 2 48 48 H 0.96700 * 113.99924 * 299.99924 * 16 14 13 49 49 H 1.09000 * 109.47233 * 64.99778 * 17 14 13 50 50 H 1.09008 * 109.47063 * 305.00617 * 17 14 13 51 51 H 1.08998 * 109.47057 * 183.95814 * 19 18 17 52 52 H 1.08994 * 109.47104 * 63.95622 * 19 18 17 53 53 H 1.08991 * 109.47207 * 303.95244 * 19 18 17 54 54 H 1.09004 * 109.47100 * 289.99719 * 20 18 17 55 55 H 1.09007 * 109.47328 * 49.99498 * 20 18 17 56 56 H 0.97003 * 120.00069 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5053 -0.8127 1.1981 6 6 3.9991 -1.8648 2.0974 7 6 5.5186 -1.9815 1.9558 8 7 6.1384 -0.6875 2.2736 9 6 7.6036 -0.7789 2.2224 10 6 5.6445 0.3647 1.3742 11 6 4.1251 0.4814 1.5158 12 7 2.0197 -0.6926 -1.1994 13 6 2.0825 0.2225 -2.3469 14 6 2.5962 -0.5331 -3.5741 15 1 1.9201 -1.3568 -3.8030 16 8 3.9012 -1.0489 -3.3042 17 6 2.6623 0.4201 -4.7691 18 7 3.0403 -0.3305 -5.9739 19 6 1.9911 -1.2881 -6.3483 20 6 3.3446 0.5788 -7.0868 21 6 3.9596 -0.2020 -8.2197 22 1 4.1097 -1.2671 -8.1224 23 6 4.3315 0.4436 -9.3798 24 7 4.8677 -0.2378 -10.3686 25 14 4.0723 2.2860 -9.5477 26 1 5.2773 3.0020 -9.0572 27 1 3.8415 2.6254 -10.9749 28 1 2.8922 2.6951 -8.7445 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.7415 -0.1645 2.1376 33 1 1.6146 -1.7241 1.2890 34 1 3.7483 -1.6103 3.1271 35 1 3.5352 -2.8154 1.8342 36 1 5.7679 -2.2627 0.9327 37 1 5.8908 -2.7415 2.6429 38 1 8.0379 0.1734 2.5269 39 1 7.9423 -1.5651 2.8971 40 1 7.9177 -1.0128 1.2051 41 1 5.8954 0.1101 0.3445 42 1 6.1084 1.3154 1.6371 43 1 3.7532 1.2412 0.8285 44 1 3.8754 0.7628 2.5388 45 1 1.4496 -1.4980 -1.4099 46 1 2.7590 1.0460 -2.1182 47 1 1.0872 0.6162 -2.5526 48 1 4.5564 -0.3700 -3.0922 49 1 3.4046 1.1945 -4.5756 50 1 1.6865 0.8819 -4.9199 51 1 2.3260 -1.8790 -7.2008 52 1 1.0836 -0.7468 -6.6155 53 1 1.7854 -1.9492 -5.5066 54 1 2.4253 1.0537 -7.4298 55 1 4.0448 1.3434 -6.7503 56 1 5.1290 0.2163 -11.1849 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118087741.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:34 Heat of formation + Delta-G solvation = -50.682427 kcal Electronic energy + Delta-G solvation = -29564.585135 eV Core-core repulsion = 25735.777107 eV Total energy + Delta-G solvation = -3828.808027 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 328.258 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.31570 -39.54740 -38.07836 -36.90677 -35.55975 -34.59504 -32.44311 -31.83035 -30.63843 -29.46522 -29.05759 -27.17063 -26.22439 -24.77962 -24.58623 -23.85561 -22.50887 -21.87220 -21.23043 -20.64110 -19.02725 -17.55823 -17.12815 -16.97556 -16.62475 -16.44648 -16.02538 -15.96502 -15.81865 -15.72692 -15.62582 -15.49653 -15.13826 -14.75006 -14.62159 -14.42292 -14.16882 -13.79705 -13.58554 -13.40934 -13.32027 -13.16804 -13.00566 -12.91495 -12.67939 -12.51880 -12.44377 -12.42621 -12.39845 -12.21481 -12.16354 -11.99407 -11.91309 -11.59426 -11.57917 -11.47450 -11.38764 -10.78768 -10.58982 -9.35556 -9.06016 -8.98066 -8.94031 -8.28276 -6.32002 1.33770 1.35711 1.46204 2.33990 2.91653 3.00988 3.04480 3.06609 3.47024 3.79487 3.92718 3.98149 3.98383 4.14599 4.18128 4.26103 4.30871 4.34335 4.38957 4.41355 4.45993 4.51653 4.55180 4.58233 4.64413 4.65278 4.66538 4.69381 4.71801 4.78167 4.84021 4.88767 4.89508 4.95590 4.97242 5.01150 5.01204 5.05666 5.09959 5.15327 5.16907 5.27435 5.28756 5.52698 5.98450 6.02283 6.04125 6.20173 6.29480 6.35090 6.38089 6.63640 6.67943 6.74736 7.10203 7.31556 8.88713 Molecular weight = 328.26amu Principal moments of inertia in cm(-1) A = 0.013797 B = 0.002450 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.869600 B =11424.319022 C =12523.600749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.094 3.906 3 H 0.070 0.930 4 C 0.073 3.927 5 N -0.526 5.526 6 C 0.063 3.937 7 C 0.059 3.941 8 N -0.553 5.553 9 C 0.025 3.975 10 C 0.059 3.941 11 C 0.067 3.933 12 N -0.659 5.659 13 C 0.045 3.955 14 C 0.128 3.872 15 H 0.085 0.915 16 O -0.553 6.553 17 C 0.023 3.977 18 N -0.541 5.541 19 C 0.042 3.958 20 C 0.172 3.828 21 C -0.517 4.517 22 H 0.034 0.966 23 C 0.005 3.995 24 N -0.950 5.950 25 Si 0.951 3.049 26 H -0.264 1.264 27 H -0.281 1.281 28 H -0.251 1.251 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.042 0.958 33 H 0.073 0.927 34 H 0.035 0.965 35 H 0.081 0.919 36 H 0.027 0.973 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.019 0.981 41 H 0.029 0.971 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.034 0.966 45 H 0.337 0.663 46 H 0.073 0.927 47 H 0.040 0.960 48 H 0.374 0.626 49 H 0.075 0.925 50 H 0.039 0.961 51 H 0.043 0.957 52 H 0.019 0.981 53 H 0.076 0.924 54 H -0.013 1.013 55 H 0.028 0.972 56 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.504 3.028 31.351 32.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.017 4.017 3 H 0.088 0.912 4 C -0.056 4.056 5 N -0.251 5.251 6 C -0.065 4.065 7 C -0.070 4.070 8 N -0.278 5.278 9 C -0.123 4.123 10 C -0.070 4.070 11 C -0.062 4.062 12 N -0.289 5.289 13 C -0.085 4.085 14 C 0.068 3.932 15 H 0.103 0.897 16 O -0.357 6.357 17 C -0.106 4.106 18 N -0.265 5.265 19 C -0.106 4.106 20 C 0.045 3.955 21 C -0.556 4.556 22 H 0.052 0.948 23 C -0.192 4.192 24 N -0.591 5.591 25 Si 0.774 3.226 26 H -0.189 1.189 27 H -0.207 1.207 28 H -0.175 1.175 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.060 0.940 33 H 0.091 0.909 34 H 0.053 0.947 35 H 0.099 0.901 36 H 0.045 0.955 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.038 0.962 41 H 0.047 0.953 42 H 0.102 0.898 43 H 0.096 0.904 44 H 0.052 0.948 45 H 0.155 0.845 46 H 0.092 0.908 47 H 0.058 0.942 48 H 0.222 0.778 49 H 0.093 0.907 50 H 0.057 0.943 51 H 0.062 0.938 52 H 0.038 0.962 53 H 0.095 0.905 54 H 0.004 0.996 55 H 0.046 0.954 56 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.631 2.284 31.338 31.922 hybrid contribution -1.178 1.529 -1.205 2.275 sum -6.810 3.813 30.133 31.128 Atomic orbital electron populations 1.22437 0.96247 1.02565 1.02487 1.21522 0.92381 0.97392 0.90363 0.91205 1.22073 0.87071 1.00721 0.95714 1.61975 1.06046 1.05092 1.51950 1.22105 0.94379 0.95735 0.94295 1.22149 0.94414 0.91130 0.99269 1.62253 1.07039 1.06119 1.52375 1.22380 0.86742 1.03206 1.00000 1.22137 0.95231 0.95346 0.94246 1.22065 0.93530 0.91733 0.98832 1.60276 1.57557 1.08610 1.02469 1.22459 0.99724 0.95584 0.90751 1.21746 0.85451 0.95345 0.90647 0.89691 1.86583 1.19542 1.37710 1.91888 1.22897 0.99632 0.96559 0.91515 1.61725 1.41852 1.18273 1.04621 1.22189 0.91765 0.96057 1.00611 1.19952 0.94275 0.92057 0.89191 1.21283 1.39787 0.95525 0.98956 0.94757 1.25898 0.94403 1.03772 0.95107 1.70061 1.44021 1.38437 1.06533 0.85667 0.79902 0.79307 0.77736 1.18859 1.20700 1.17456 0.92848 0.91965 0.91262 0.94004 0.90885 0.94658 0.90071 0.95486 0.89522 0.90628 0.90543 0.96189 0.95306 0.89781 0.90422 0.94827 0.84479 0.90839 0.94242 0.77846 0.90688 0.94262 0.93778 0.96235 0.90541 0.99556 0.95400 0.92418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.05 9.16 71.99 0.66 -1.39 16 2 C 0.09 1.34 2.60 44.92 0.12 1.46 16 3 H 0.07 1.06 6.69 -2.39 -0.02 1.05 16 4 C 0.07 1.04 4.69 86.30 0.40 1.44 16 5 N -0.53 -9.16 4.38 -895.71 -3.92 -13.08 16 6 C 0.06 1.04 5.57 86.31 0.48 1.52 16 7 C 0.06 1.03 5.62 86.31 0.49 1.51 16 8 N -0.55 -9.73 4.97 -921.91 -4.58 -14.31 16 9 C 0.02 0.37 9.60 127.69 1.23 1.59 16 10 C 0.06 1.03 5.62 86.31 0.49 1.52 16 11 C 0.07 1.11 5.43 86.31 0.47 1.58 16 12 N -0.66 -12.00 5.86 -491.56 -2.88 -14.88 16 13 C 0.05 0.88 5.15 86.30 0.44 1.32 16 14 C 0.13 3.36 3.13 30.59 0.10 3.45 16 15 H 0.09 2.33 6.26 -2.39 -0.01 2.32 16 16 O -0.55 -17.16 13.15 -148.98 -1.96 -19.12 16 17 C 0.02 0.71 4.59 86.30 0.40 1.11 16 18 N -0.54 -22.77 4.70 -927.05 -4.36 -27.12 16 19 C 0.04 1.65 9.17 127.69 1.17 2.83 16 20 C 0.17 8.41 3.79 85.56 0.32 8.74 16 21 C -0.52 -30.78 9.07 25.60 0.23 -30.55 16 22 H 0.03 2.30 7.35 -2.91 -0.02 2.28 16 23 C 0.01 0.31 5.47 84.66 0.46 0.77 16 24 N -0.95 -60.55 13.96 21.45 0.30 -60.25 16 25 Si 0.95 44.44 27.47 68.60 1.88 46.32 16 26 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 27 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 28 H -0.25 -10.89 6.54 99.48 0.65 -10.24 16 29 H 0.05 0.67 7.45 -2.39 -0.02 0.65 16 30 H 0.06 0.69 8.13 -2.39 -0.02 0.67 16 31 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.04 0.54 8.00 -2.39 -0.02 0.52 16 33 H 0.07 1.02 7.85 -2.39 -0.02 1.01 16 34 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.08 1.26 8.00 -2.38 -0.02 1.24 16 36 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.09 1.27 8.13 -2.39 -0.02 1.25 16 38 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 39 H 0.08 0.97 8.13 -2.39 -0.02 0.95 16 40 H 0.02 0.33 8.14 -2.38 -0.02 0.31 16 41 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.08 1.25 6.87 -2.39 -0.02 1.23 16 44 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.34 6.18 8.47 -89.70 -0.76 5.42 16 46 H 0.07 1.42 8.06 -2.39 -0.02 1.40 16 47 H 0.04 0.70 7.44 -2.39 -0.02 0.68 16 48 H 0.37 9.98 9.04 -74.06 -0.67 9.31 16 49 H 0.07 2.25 7.93 -2.39 -0.02 2.23 16 50 H 0.04 1.14 8.12 -2.38 -0.02 1.12 16 51 H 0.04 2.02 6.86 -2.39 -0.02 2.00 16 52 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 53 H 0.08 2.56 6.21 -2.39 -0.01 2.54 16 54 H -0.01 -0.64 7.18 -2.38 -0.02 -0.65 16 55 H 0.03 1.33 7.36 -2.38 -0.02 1.31 16 56 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 Total: -1.00 -70.61 425.01 -8.72 -79.32 By element: Atomic # 1 Polarization: 26.88 SS G_CDS: -0.65 Total: 26.23 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: 7.45 Total: -3.11 kcal Atomic # 7 Polarization: -114.21 SS G_CDS: -15.44 Total: -129.65 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -1.96 Total: -19.12 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.88 Total: 46.32 kcal Total: -70.61 -8.72 -79.32 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118087741.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.640 kcal (2) G-P(sol) polarization free energy of solvation -70.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds