Wall clock time and date at job start Tue Mar 31 2020 04:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46885 * 2 1 4 4 C 1.53001 * 109.47483 * 119.99829 * 2 1 3 5 5 N 1.46906 * 109.46515 * 65.98999 * 4 2 1 6 6 C 1.46906 * 110.99500 * 183.59441 * 5 4 2 7 7 C 1.53004 * 109.46844 * 180.02562 * 6 5 4 8 8 H 1.09007 * 109.46772 * 304.99911 * 7 6 5 9 9 O 1.42901 * 109.46973 * 64.99610 * 7 6 5 10 10 C 1.53000 * 109.46714 * 184.99964 * 7 6 5 11 11 N 1.46905 * 109.46571 * 179.97438 * 10 7 6 12 12 C 1.46903 * 110.99877 * 293.94924 * 11 10 7 13 13 C 1.46901 * 110.99611 * 170.00121 * 11 10 7 14 14 C 1.50704 * 109.46932 * 189.99808 * 13 11 10 15 15 H 1.08005 * 119.99834 * 359.97438 * 14 13 11 16 16 C 1.37873 * 120.00082 * 179.97438 * 14 13 11 17 17 N 1.31520 * 120.00011 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00238 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47100 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47284 * 119.99821 * 18 16 14 21 21 H 1.48493 * 109.47284 * 240.00077 * 18 16 14 22 22 N 1.46900 * 109.47241 * 240.00568 * 2 1 3 23 23 C 1.46952 * 111.00137 * 62.27679 * 22 2 1 24 24 C 1.53048 * 109.36321 * 183.18924 * 23 22 2 25 25 N 1.46954 * 109.37103 * 301.60362 * 24 23 22 26 26 C 1.46895 * 111.00537 * 183.18604 * 25 24 23 27 27 C 1.46964 * 110.87892 * 59.31843 * 25 24 23 28 28 C 1.46958 * 111.00278 * 186.08526 * 22 2 1 29 29 H 1.08992 * 109.46967 * 59.99604 * 1 2 3 30 30 H 1.08995 * 109.46645 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46886 * 299.99488 * 1 2 3 32 32 H 1.08995 * 109.47076 * 185.98778 * 4 2 1 33 33 H 1.08995 * 109.47103 * 305.99469 * 4 2 1 34 34 H 1.00891 * 111.00072 * 307.54877 * 5 4 2 35 35 H 1.09000 * 109.46986 * 299.99967 * 6 5 4 36 36 H 1.08990 * 109.47281 * 59.99965 * 6 5 4 37 37 H 0.96698 * 113.99611 * 60.00677 * 9 7 6 38 38 H 1.09001 * 109.47025 * 299.99417 * 10 7 6 39 39 H 1.09000 * 109.46933 * 60.00348 * 10 7 6 40 40 H 1.09000 * 109.46661 * 60.00342 * 12 11 10 41 41 H 1.09000 * 109.46693 * 180.02562 * 12 11 10 42 42 H 1.08993 * 109.47347 * 300.00806 * 12 11 10 43 43 H 1.09000 * 109.46907 * 309.99459 * 13 11 10 44 44 H 1.08996 * 109.47047 * 69.99729 * 13 11 10 45 45 H 0.96999 * 119.99910 * 180.02562 * 17 16 14 46 46 H 1.08999 * 109.48639 * 63.22744 * 23 22 2 47 47 H 1.08993 * 109.51299 * 303.17047 * 23 22 2 48 48 H 1.09004 * 109.48984 * 181.63356 * 24 23 22 49 49 H 1.09008 * 109.48967 * 61.57095 * 24 23 22 50 50 H 1.09001 * 109.47045 * 60.00019 * 26 25 24 51 51 H 1.08992 * 109.47280 * 299.99941 * 26 25 24 52 52 H 1.09002 * 109.47523 * 179.97438 * 26 25 24 53 53 H 1.08999 * 109.48882 * 60.64948 * 27 25 24 54 54 H 1.09001 * 109.48670 * 180.71901 * 27 25 24 55 55 H 1.09008 * 109.48462 * 296.77637 * 28 22 2 56 56 H 1.09004 * 109.48987 * 56.81570 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.6720 -2.1417 1.1791 6 6 2.0713 -2.8499 2.4026 7 6 1.6728 -4.3230 2.2922 8 1 0.6069 -4.3958 2.0760 9 8 2.4157 -4.9397 1.2387 10 6 1.9750 -5.0334 3.6132 11 7 1.5918 -6.4477 3.5073 12 6 0.1372 -6.5893 3.3592 13 6 2.0804 -7.2132 4.6619 14 6 1.8878 -8.6858 4.4061 15 1 1.4461 -9.0196 3.4787 16 6 2.2753 -9.6070 5.3560 17 7 2.8126 -9.2006 6.4855 18 14 2.0359 -11.4323 5.0392 19 1 1.4150 -11.6258 3.7042 20 1 3.3525 -12.1180 5.0762 21 1 1.1503 -12.0042 6.0851 22 7 2.0197 -0.6924 -1.1995 23 6 1.5936 0.0048 -2.4209 24 6 2.0547 -0.7891 -3.6454 25 7 3.5164 -0.9359 -3.6091 26 6 4.0061 -1.6284 -4.8084 27 6 3.9425 -1.6332 -2.3875 28 6 3.4815 -0.8392 -1.1630 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3632 -1.0276 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 3.1248 -0.6293 1.3044 33 1 1.5919 -0.2731 2.1359 34 1 0.6844 -2.2510 1.0039 35 1 3.1512 -2.7746 2.5300 36 1 1.5720 -2.4015 3.2614 37 1 3.3740 -4.9121 1.3649 38 1 3.0409 -4.9606 3.8292 39 1 1.4083 -4.5630 4.4166 40 1 -0.1884 -6.0705 2.4575 41 1 -0.1191 -7.6460 3.2835 42 1 -0.3603 -6.1563 4.2270 43 1 3.1399 -7.0062 4.8131 44 1 1.5228 -6.9231 5.5524 45 1 3.0856 -9.8487 7.1536 46 1 2.0370 1.0003 -2.4449 47 1 0.5071 0.0904 -2.4310 48 1 1.7649 -0.2589 -4.5528 49 1 1.5898 -1.7750 -3.6358 50 1 3.7344 -1.0555 -5.6951 51 1 3.5566 -2.6197 -4.8646 52 1 5.0907 -1.7233 -4.7559 53 1 3.4991 -2.6286 -2.3636 54 1 5.0291 -1.7183 -2.3777 55 1 3.9463 0.1467 -1.1726 56 1 3.7712 -1.3690 -0.2555 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120573344.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:48 Heat of formation + Delta-G solvation = -50.059733 kcal Electronic energy + Delta-G solvation = -29448.341239 eV Core-core repulsion = 25619.560214 eV Total energy + Delta-G solvation = -3828.781025 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 328.258 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.53301 -39.48696 -37.97945 -36.98076 -35.30507 -34.60595 -32.49723 -31.96785 -30.70892 -29.04512 -28.33357 -27.81001 -26.46265 -24.84723 -24.45554 -23.94077 -22.66469 -21.81347 -21.22311 -20.38101 -18.56605 -17.81432 -17.39757 -16.99603 -16.68537 -16.18442 -16.09256 -15.93438 -15.87100 -15.80750 -15.62057 -15.34245 -15.24529 -14.85937 -14.56884 -14.25548 -13.97131 -13.80698 -13.72565 -13.32880 -13.22948 -13.08723 -12.95398 -12.82639 -12.64348 -12.59701 -12.54616 -12.46147 -12.37040 -12.20771 -12.14772 -12.06080 -11.95641 -11.58374 -11.49674 -11.35625 -11.26805 -10.62841 -10.57756 -9.35134 -9.16108 -9.04026 -8.94569 -8.21239 -6.30892 1.40270 1.41187 1.55168 2.40059 2.87172 3.03458 3.07864 3.11541 3.52763 3.77099 3.87653 3.96272 3.98790 4.09048 4.16270 4.24530 4.28940 4.32401 4.40374 4.44728 4.49112 4.51324 4.55432 4.58372 4.65582 4.69332 4.70714 4.72641 4.73401 4.80941 4.83563 4.90307 4.92212 4.96189 5.01176 5.05608 5.06810 5.14783 5.16314 5.17496 5.20978 5.32061 5.39471 5.64862 6.00521 6.04623 6.05005 6.12953 6.29608 6.33006 6.35265 6.56380 6.65061 6.85598 7.08781 7.38843 8.89948 Molecular weight = 328.26amu Principal moments of inertia in cm(-1) A = 0.017368 B = 0.002153 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.777261 B =13000.542965 C =13902.433773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.085 3.915 3 H 0.046 0.954 4 C 0.066 3.934 5 N -0.664 5.664 6 C 0.039 3.961 7 C 0.134 3.866 8 H 0.087 0.913 9 O -0.552 6.552 10 C 0.024 3.976 11 N -0.539 5.539 12 C 0.042 3.958 13 C 0.208 3.792 14 C -0.521 4.521 15 H 0.060 0.940 16 C 0.000 4.000 17 N -0.935 5.935 18 Si 0.969 3.031 19 H -0.265 1.265 20 H -0.277 1.277 21 H -0.277 1.277 22 N -0.523 5.523 23 C 0.056 3.944 24 C 0.059 3.941 25 N -0.554 5.554 26 C 0.025 3.975 27 C 0.061 3.939 28 C 0.069 3.931 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.039 0.961 34 H 0.341 0.659 35 H 0.076 0.924 36 H 0.039 0.961 37 H 0.376 0.624 38 H 0.067 0.933 39 H 0.030 0.970 40 H 0.075 0.925 41 H 0.054 0.946 42 H 0.011 0.989 43 H 0.004 0.996 44 H -0.040 1.040 45 H 0.264 0.736 46 H 0.033 0.967 47 H 0.089 0.911 48 H 0.088 0.912 49 H 0.029 0.971 50 H 0.077 0.923 51 H 0.020 0.980 52 H 0.072 0.928 53 H 0.027 0.973 54 H 0.080 0.920 55 H 0.028 0.972 56 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.923 23.917 -17.987 29.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 H 0.063 0.937 4 C -0.063 4.063 5 N -0.296 5.296 6 C -0.091 4.091 7 C 0.073 3.927 8 H 0.104 0.896 9 O -0.356 6.356 10 C -0.105 4.105 11 N -0.263 5.263 12 C -0.107 4.107 13 C 0.081 3.919 14 C -0.560 4.560 15 H 0.078 0.922 16 C -0.198 4.198 17 N -0.576 5.576 18 Si 0.794 3.206 19 H -0.189 1.189 20 H -0.203 1.203 21 H -0.203 1.203 22 N -0.249 5.249 23 C -0.072 4.072 24 C -0.070 4.070 25 N -0.279 5.279 26 C -0.123 4.123 27 C -0.067 4.067 28 C -0.059 4.059 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.057 0.943 34 H 0.161 0.839 35 H 0.095 0.905 36 H 0.057 0.943 37 H 0.223 0.777 38 H 0.085 0.915 39 H 0.048 0.952 40 H 0.094 0.906 41 H 0.073 0.927 42 H 0.029 0.971 43 H 0.022 0.978 44 H -0.022 1.022 45 H 0.073 0.927 46 H 0.052 0.948 47 H 0.108 0.892 48 H 0.107 0.893 49 H 0.047 0.953 50 H 0.096 0.904 51 H 0.039 0.961 52 H 0.091 0.909 53 H 0.046 0.954 54 H 0.099 0.901 55 H 0.046 0.954 56 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.670 23.385 -18.837 30.074 hybrid contribution -0.342 -0.331 2.048 2.102 sum -2.011 23.054 -16.789 28.590 Atomic orbital electron populations 1.21861 0.93603 1.02383 1.02375 1.21656 0.96253 0.94778 0.89610 0.93653 1.22039 1.00536 0.88017 0.95725 1.60259 1.23618 1.10577 1.35168 1.22520 1.01478 0.93614 0.91514 1.21669 0.96253 0.89540 0.85210 0.89551 1.86563 1.22400 1.81168 1.45511 1.22849 1.00747 0.89123 0.97782 1.61928 1.13087 1.08796 1.42522 1.22208 0.87582 1.01662 0.99222 1.19397 0.93429 0.93044 0.86002 1.21494 1.40080 0.91823 1.02569 0.92173 1.25917 0.94874 1.04262 0.94711 1.70089 1.43153 1.35940 1.08374 0.85329 0.77996 0.78868 0.78403 1.18919 1.20280 1.20292 1.62069 1.11262 1.50268 1.01276 1.22212 1.00753 0.95018 0.89184 1.22163 0.87112 0.99143 0.98534 1.62254 1.11993 1.50818 1.02875 1.22372 1.00920 0.96450 0.92542 1.22104 1.00021 0.95289 0.89289 1.22033 0.87504 0.98259 0.98088 0.91775 0.92278 0.91481 0.91322 0.94304 0.83915 0.90538 0.94298 0.77687 0.91481 0.95204 0.90645 0.92750 0.97097 0.97806 1.02205 0.92679 0.94829 0.89249 0.89325 0.95289 0.90381 0.96097 0.90896 0.95436 0.90122 0.95355 0.89731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 8.82 71.98 0.63 -1.18 16 2 C 0.09 1.25 2.44 44.92 0.11 1.36 16 3 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 4 C 0.07 1.04 4.63 86.30 0.40 1.44 16 5 N -0.66 -12.81 6.08 -513.87 -3.12 -15.93 16 6 C 0.04 0.82 5.32 86.30 0.46 1.28 16 7 C 0.13 3.69 3.02 30.60 0.09 3.78 16 8 H 0.09 2.45 6.55 -2.38 -0.02 2.44 16 9 O -0.55 -17.32 13.15 -148.98 -1.96 -19.28 16 10 C 0.02 0.84 4.62 86.30 0.40 1.24 16 11 N -0.54 -23.85 4.62 -927.03 -4.28 -28.14 16 12 C 0.04 1.66 9.14 127.69 1.17 2.83 16 13 C 0.21 11.31 4.72 85.56 0.40 11.71 16 14 C -0.52 -30.33 8.46 25.60 0.22 -30.11 16 15 H 0.06 3.48 7.12 -2.91 -0.02 3.46 16 16 C 0.00 0.01 5.46 84.65 0.46 0.47 16 17 N -0.93 -56.89 13.29 21.45 0.28 -56.61 16 18 Si 0.97 45.12 29.54 68.60 2.03 47.15 16 19 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 20 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 21 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 22 N -0.52 -9.06 4.28 -870.47 -3.72 -12.79 16 23 C 0.06 0.87 5.36 86.31 0.46 1.33 16 24 C 0.06 0.96 5.62 86.31 0.49 1.44 16 25 N -0.55 -9.78 4.97 -921.94 -4.58 -14.35 16 26 C 0.03 0.37 9.60 127.69 1.23 1.59 16 27 C 0.06 1.16 5.62 86.31 0.49 1.65 16 28 C 0.07 1.26 5.17 86.31 0.45 1.71 16 29 H 0.06 0.72 6.38 -2.39 -0.02 0.71 16 30 H 0.06 0.87 6.63 -2.39 -0.02 0.86 16 31 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.07 1.12 6.63 -2.39 -0.02 1.11 16 33 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.34 6.71 6.92 -89.70 -0.62 6.09 16 35 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.38 10.09 9.04 -74.06 -0.67 9.42 16 38 H 0.07 2.33 7.93 -2.39 -0.02 2.31 16 39 H 0.03 1.01 8.12 -2.39 -0.02 0.99 16 40 H 0.08 2.57 6.47 -2.39 -0.02 2.56 16 41 H 0.05 2.37 6.76 -2.39 -0.02 2.36 16 42 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.00 0.22 7.93 -2.39 -0.02 0.20 16 44 H -0.04 -2.33 8.12 -2.39 -0.02 -2.35 16 45 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 46 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 47 H 0.09 1.18 6.21 -2.39 -0.01 1.17 16 48 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 49 H 0.03 0.56 8.14 -2.38 -0.02 0.54 16 50 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 51 H 0.02 0.33 8.14 -2.39 -0.02 0.31 16 52 H 0.07 0.96 8.13 -2.39 -0.02 0.95 16 53 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 54 H 0.08 1.39 8.13 -2.39 -0.02 1.37 16 55 H 0.03 0.52 8.14 -2.38 -0.02 0.50 16 56 H 0.08 1.65 6.08 -2.38 -0.01 1.63 16 Total: -1.00 -67.24 422.56 -8.36 -75.60 By element: Atomic # 1 Polarization: 24.25 SS G_CDS: -0.45 Total: 23.80 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: 7.45 Total: 0.55 kcal Atomic # 7 Polarization: -112.39 SS G_CDS: -15.43 Total: -127.81 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -1.96 Total: -19.28 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -67.24 -8.36 -75.60 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120573344.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.542 kcal (2) G-P(sol) polarization free energy of solvation -67.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds