Wall clock time and date at job start Tue Mar 31 2020 04:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42908 * 109.46723 * 2 1 4 4 C 1.42903 * 113.99915 * 179.97438 * 3 2 1 5 5 C 1.52993 * 109.47082 * 180.02562 * 4 3 2 6 6 O 1.42898 * 109.47476 * 65.00055 * 5 4 3 7 7 C 1.42895 * 114.00192 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47075 * 180.02562 * 7 6 5 9 9 O 1.21282 * 120.00058 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99997 * 179.97438 * 8 7 6 11 11 C 1.46921 * 120.63225 * 0.02846 * 10 8 7 12 12 C 1.53191 * 108.77411 * 233.58641 * 11 10 8 13 13 C 1.53043 * 109.31132 * 305.35957 * 12 11 10 14 14 H 1.09002 * 109.46131 * 301.34824 * 13 12 11 15 15 C 1.53001 * 109.44748 * 181.37889 * 13 12 11 16 16 C 1.53046 * 109.53475 * 61.36818 * 13 12 11 17 17 H 1.08996 * 109.49923 * 58.59144 * 16 13 12 18 18 C 1.53006 * 109.49435 * 178.68408 * 16 13 12 19 19 N 1.46495 * 109.46960 * 185.00197 * 18 16 13 20 20 C 1.36936 * 119.99962 * 180.02562 * 19 18 16 21 21 H 1.07996 * 120.00154 * 359.97438 * 20 19 18 22 22 C 1.38815 * 120.00066 * 179.97438 * 20 19 18 23 23 N 1.31627 * 119.99844 * 359.97438 * 22 20 19 24 24 Si 1.86791 * 120.00115 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47266 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47348 * 120.00017 * 24 22 20 27 27 H 1.48505 * 109.47320 * 239.99971 * 24 22 20 28 28 C 1.46925 * 120.62980 * 180.02562 * 10 8 7 29 29 H 1.09003 * 109.46893 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47164 * 299.99200 * 1 2 3 31 31 H 1.08992 * 109.47310 * 59.99712 * 1 2 3 32 32 H 1.09003 * 109.47164 * 240.00800 * 2 1 3 33 33 H 1.08992 * 109.47310 * 120.00288 * 2 1 3 34 34 H 1.09003 * 109.46908 * 60.00414 * 4 3 2 35 35 H 1.09004 * 109.47203 * 300.00830 * 4 3 2 36 36 H 1.09003 * 109.47433 * 305.00107 * 5 4 3 37 37 H 1.09001 * 109.47222 * 185.00124 * 5 4 3 38 38 H 1.08997 * 109.47036 * 60.00303 * 7 6 5 39 39 H 1.08999 * 109.47491 * 300.00329 * 7 6 5 40 40 H 1.09002 * 109.58756 * 353.36576 * 11 10 8 41 41 H 1.09001 * 109.59125 * 113.65472 * 11 10 8 42 42 H 1.09004 * 109.49733 * 185.41012 * 12 11 10 43 43 H 1.08994 * 109.50132 * 65.31225 * 12 11 10 44 44 H 1.08992 * 109.47480 * 299.96774 * 15 13 12 45 45 H 1.08996 * 109.47171 * 59.97125 * 15 13 12 46 46 H 1.09008 * 109.46811 * 179.97438 * 15 13 12 47 47 H 1.09001 * 109.46991 * 304.99842 * 18 16 13 48 48 H 1.09000 * 109.47170 * 64.99839 * 18 16 13 49 49 H 0.97002 * 120.00280 * 359.97438 * 19 18 16 50 50 H 0.96999 * 119.99556 * 179.97438 * 23 22 20 51 51 H 1.09003 * 109.59222 * 6.62634 * 28 10 8 52 52 H 1.09006 * 109.70276 * 246.27263 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4603 0.0006 5 6 3.8252 2.9385 0.0012 6 8 3.3974 3.5452 1.2222 7 6 3.7191 4.9337 1.3252 8 6 3.2247 5.4673 2.6450 9 8 2.6536 4.7309 3.4213 10 7 3.4181 6.7626 2.9633 11 6 4.1086 7.6668 2.0337 12 6 5.2664 8.3444 2.7735 13 6 4.7307 9.0279 4.0337 14 1 3.9717 9.7591 3.7556 15 6 5.8788 9.7347 4.7569 16 6 4.1127 7.9791 4.9613 17 1 4.8648 7.2338 5.2200 18 6 3.6069 8.6589 6.2353 19 7 3.1244 7.6418 7.1728 20 6 2.6207 8.0164 8.3898 21 1 2.5796 9.0615 8.6587 22 6 2.1630 7.0527 9.2780 23 7 2.2126 5.7789 8.9500 24 14 1.4766 7.5636 10.9384 25 1 1.5302 9.0424 11.0624 26 1 0.0677 7.1085 11.0529 27 1 2.2857 6.9460 12.0198 28 6 2.9424 7.2972 4.2465 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5137 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 3.8339 0.9767 -0.8892 35 1 3.8333 0.9768 0.8908 36 1 3.3497 3.4418 -0.8407 37 1 4.9081 3.0257 -0.0880 38 1 3.2417 5.4786 0.5109 39 1 4.7998 5.0619 1.2637 40 1 4.4980 7.0963 1.1904 41 1 3.4108 8.4223 1.6726 42 1 5.7272 9.0886 2.1239 43 1 6.0075 7.5957 3.0528 44 1 6.6379 9.0037 5.0351 45 1 6.3188 10.4820 4.0967 46 1 5.4976 10.2221 5.6544 47 1 4.4204 9.2200 6.6952 48 1 2.7923 9.3386 5.9856 49 1 3.1610 6.7031 6.9312 50 1 1.8931 5.1055 9.5708 51 1 2.5622 6.4829 4.8633 52 1 2.1489 8.0235 4.0704 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133341221.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:15 Heat of formation + Delta-G solvation = -122.371876 kcal Electronic energy + Delta-G solvation = -28819.519399 eV Core-core repulsion = 24819.476838 eV Total energy + Delta-G solvation = -4000.042561 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.21708 -38.71398 -37.98427 -37.00819 -34.94210 -33.64844 -32.13428 -31.83759 -30.11756 -29.64514 -28.56854 -27.17224 -25.18794 -23.26466 -23.09715 -22.98298 -22.79445 -21.20091 -19.98093 -18.99597 -17.53965 -17.17016 -17.05568 -16.70122 -16.11913 -16.04398 -15.40842 -14.92863 -14.81258 -14.75935 -14.37073 -13.99564 -13.82334 -13.56929 -13.47472 -13.25562 -13.04318 -12.80867 -12.74905 -12.51040 -12.37919 -12.12192 -11.85480 -11.71983 -11.68765 -11.49692 -11.45819 -11.17051 -10.96418 -10.85274 -10.76851 -10.56978 -10.23286 -10.12497 -9.90166 -9.88532 -9.80584 -9.57522 -9.42326 -8.79646 -8.44285 -6.82100 -5.65722 -2.95496 2.74304 2.79321 3.43424 3.49682 3.54307 3.57383 3.70776 4.49873 4.61550 4.68400 4.73568 4.82871 4.83963 4.88164 4.91200 4.92454 4.98883 5.05568 5.13145 5.13841 5.18027 5.18423 5.28857 5.35260 5.42503 5.54258 5.64954 5.68036 5.69476 5.72160 5.73935 5.83144 5.92128 5.95061 5.98801 6.04929 6.22050 6.27900 6.35479 6.48180 6.61994 6.64225 6.84214 6.90148 6.94245 7.02908 7.54407 7.78423 8.38407 8.51818 9.62708 10.21297 10.55219 11.56548 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.009661 B = 0.002810 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2897.679718 B = 9962.761833 C =12501.290828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.380 6.380 4 C 0.065 3.935 5 C 0.062 3.938 6 O -0.352 6.352 7 C 0.047 3.953 8 C 0.510 3.490 9 O -0.505 6.505 10 N -0.612 5.612 11 C 0.106 3.894 12 C -0.129 4.129 13 C -0.084 4.084 14 H 0.071 0.929 15 C -0.148 4.148 16 C -0.102 4.102 17 H 0.074 0.926 18 C 0.159 3.841 19 N -0.733 5.733 20 C -0.241 4.241 21 H 0.070 0.930 22 C -0.014 4.014 23 N -0.928 5.928 24 Si 0.905 3.095 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 C 0.122 3.878 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.044 0.956 33 H 0.049 0.951 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.053 0.947 45 H 0.048 0.952 46 H 0.065 0.935 47 H 0.027 0.973 48 H 0.018 0.982 49 H 0.385 0.615 50 H 0.255 0.745 51 H 0.104 0.896 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.099 -2.239 -25.550 26.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.299 6.299 4 C -0.012 4.012 5 C -0.015 4.015 6 O -0.270 6.270 7 C -0.033 4.033 8 C 0.296 3.704 9 O -0.378 6.378 10 N -0.348 5.348 11 C -0.017 4.017 12 C -0.167 4.167 13 C -0.104 4.104 14 H 0.090 0.910 15 C -0.205 4.205 16 C -0.121 4.121 17 H 0.092 0.908 18 C 0.031 3.969 19 N -0.378 5.378 20 C -0.372 4.372 21 H 0.088 0.912 22 C -0.210 4.210 23 N -0.577 5.577 24 Si 0.737 3.263 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 C 0.000 4.000 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.086 0.914 44 H 0.072 0.928 45 H 0.067 0.933 46 H 0.084 0.916 47 H 0.045 0.955 48 H 0.036 0.964 49 H 0.219 0.781 50 H 0.065 0.935 51 H 0.122 0.878 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.492 -2.517 -24.840 25.797 hybrid contribution 0.061 -0.100 0.579 0.591 sum 6.553 -2.617 -24.261 25.266 Atomic orbital electron populations 1.21740 0.93677 1.02131 1.03397 1.22458 0.95834 0.83807 0.99839 1.87992 1.20300 1.26260 1.95356 1.22477 0.82508 0.95305 1.00891 1.22576 0.98269 0.92979 0.87637 1.88127 1.80603 1.20809 1.37506 1.22239 1.00104 0.84422 0.96510 1.20155 0.80361 0.81874 0.88059 1.90809 1.40230 1.56160 1.50646 1.48113 1.58455 1.08589 1.19682 1.21743 0.94579 0.93530 0.91838 1.21990 0.97458 0.99969 0.97308 1.21091 0.97783 0.97027 0.94455 0.91040 1.21881 0.97959 1.00019 1.00639 1.21715 0.97464 0.97398 0.95566 0.90774 1.20720 0.96009 0.92140 0.88048 1.42433 1.74906 1.04855 1.15599 1.19233 1.33147 0.92503 0.92307 0.91221 1.24767 1.02206 0.95301 0.98729 1.69694 1.52687 0.99088 1.36186 0.86143 0.78454 0.77402 0.84332 1.20637 1.21902 1.21949 1.21711 0.95756 0.99604 0.82896 0.91194 0.91429 0.92012 0.93730 0.93238 0.91852 0.92155 0.92333 0.91663 0.90566 0.90602 0.90458 0.91184 0.90844 0.91440 0.92785 0.93257 0.91599 0.95545 0.96424 0.78093 0.93545 0.87783 0.91598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.28 37.16 0.38 -0.95 16 2 C 0.06 0.54 6.66 37.16 0.25 0.79 16 3 O -0.38 -4.70 10.31 -40.08 -0.41 -5.11 16 4 C 0.06 0.62 6.32 37.15 0.23 0.86 16 5 C 0.06 0.59 6.32 37.15 0.23 0.82 16 6 O -0.35 -5.05 9.84 -59.73 -0.59 -5.64 16 7 C 0.05 0.55 4.76 36.01 0.17 0.73 16 8 C 0.51 8.41 7.78 -10.98 -0.09 8.32 16 9 O -0.51 -11.32 15.91 -14.35 -0.23 -11.54 16 10 N -0.61 -8.80 2.97 -172.80 -0.51 -9.32 16 11 C 0.11 1.01 6.34 -3.71 -0.02 0.99 16 12 C -0.13 -1.23 5.36 -26.61 -0.14 -1.37 16 13 C -0.08 -1.02 2.23 -90.57 -0.20 -1.23 16 14 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 15 C -0.15 -1.71 8.82 37.16 0.33 -1.39 16 16 C -0.10 -1.68 1.92 -90.52 -0.17 -1.85 16 17 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 18 C 0.16 3.22 5.41 -4.04 -0.02 3.20 16 19 N -0.73 -19.26 5.38 -59.91 -0.32 -19.58 16 20 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 21 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 22 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 23 N -0.93 -29.51 13.06 55.49 0.72 -28.79 16 24 Si 0.91 23.18 29.55 -169.99 -5.02 18.16 16 25 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 27 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 28 C 0.12 2.12 5.52 -3.74 -0.02 2.09 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.68 7.94 -51.93 -0.41 0.27 16 39 H 0.08 0.67 7.69 -51.93 -0.40 0.27 16 40 H 0.08 0.53 5.93 -51.93 -0.31 0.22 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.07 0.85 6.29 -51.92 -0.33 0.52 16 47 H 0.03 0.54 6.14 -51.93 -0.32 0.22 16 48 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.38 10.90 6.90 -40.82 -0.28 10.62 16 50 H 0.25 7.82 8.31 -40.82 -0.34 7.48 16 51 H 0.10 2.29 6.21 -51.93 -0.32 1.97 16 52 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 411.35 15.07 6.20 6.20 Total: -1.00 -37.49 411.35 -9.01 -46.50 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -9.53 Total: 5.72 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: 0.68 Total: 3.40 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: -0.11 Total: -57.68 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -1.23 Total: -22.29 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -5.02 Total: 18.16 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -37.49 -9.01 -46.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133341221.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.872 kcal (2) G-P(sol) polarization free energy of solvation -37.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds