Wall clock time and date at job start Tue Mar 31 2020 04:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42908 * 109.46723 * 2 1 4 4 C 1.42903 * 113.99915 * 179.97438 * 3 2 1 5 5 C 1.52993 * 109.47082 * 180.02562 * 4 3 2 6 6 O 1.42898 * 109.47476 * 65.00055 * 5 4 3 7 7 C 1.42895 * 114.00192 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47075 * 180.02562 * 7 6 5 9 9 O 1.21282 * 120.00058 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99997 * 179.97438 * 8 7 6 11 11 C 1.46921 * 120.63225 * 0.02846 * 10 8 7 12 12 C 1.53191 * 108.77411 * 233.58641 * 11 10 8 13 13 C 1.53043 * 109.31132 * 305.35957 * 12 11 10 14 14 H 1.09002 * 109.46131 * 301.34824 * 13 12 11 15 15 C 1.53001 * 109.44748 * 181.37889 * 13 12 11 16 16 C 1.53046 * 109.53475 * 61.36818 * 13 12 11 17 17 H 1.08996 * 109.49923 * 58.59144 * 16 13 12 18 18 C 1.53006 * 109.49435 * 178.68408 * 16 13 12 19 19 N 1.46495 * 109.46960 * 185.00197 * 18 16 13 20 20 C 1.36936 * 119.99962 * 180.02562 * 19 18 16 21 21 H 1.07996 * 120.00154 * 359.97438 * 20 19 18 22 22 C 1.38815 * 120.00066 * 179.97438 * 20 19 18 23 23 N 1.31627 * 119.99844 * 359.97438 * 22 20 19 24 24 Si 1.86791 * 120.00115 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47266 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47348 * 120.00017 * 24 22 20 27 27 H 1.48505 * 109.47320 * 239.99971 * 24 22 20 28 28 C 1.46925 * 120.62980 * 180.02562 * 10 8 7 29 29 H 1.09003 * 109.46893 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47164 * 299.99200 * 1 2 3 31 31 H 1.08992 * 109.47310 * 59.99712 * 1 2 3 32 32 H 1.09003 * 109.47164 * 240.00800 * 2 1 3 33 33 H 1.08992 * 109.47310 * 120.00288 * 2 1 3 34 34 H 1.09003 * 109.46908 * 60.00414 * 4 3 2 35 35 H 1.09004 * 109.47203 * 300.00830 * 4 3 2 36 36 H 1.09003 * 109.47433 * 305.00107 * 5 4 3 37 37 H 1.09001 * 109.47222 * 185.00124 * 5 4 3 38 38 H 1.08997 * 109.47036 * 60.00303 * 7 6 5 39 39 H 1.08999 * 109.47491 * 300.00329 * 7 6 5 40 40 H 1.09002 * 109.58756 * 353.36576 * 11 10 8 41 41 H 1.09001 * 109.59125 * 113.65472 * 11 10 8 42 42 H 1.09004 * 109.49733 * 185.41012 * 12 11 10 43 43 H 1.08994 * 109.50132 * 65.31225 * 12 11 10 44 44 H 1.08992 * 109.47480 * 299.96774 * 15 13 12 45 45 H 1.08996 * 109.47171 * 59.97125 * 15 13 12 46 46 H 1.09008 * 109.46811 * 179.97438 * 15 13 12 47 47 H 1.09001 * 109.46991 * 304.99842 * 18 16 13 48 48 H 1.09000 * 109.47170 * 64.99839 * 18 16 13 49 49 H 0.97002 * 120.00280 * 359.97438 * 19 18 16 50 50 H 0.96999 * 119.99556 * 179.97438 * 23 22 20 51 51 H 1.09003 * 109.59222 * 6.62634 * 28 10 8 52 52 H 1.09006 * 109.70276 * 246.27263 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4603 0.0006 5 6 3.8252 2.9385 0.0012 6 8 3.3974 3.5452 1.2222 7 6 3.7191 4.9337 1.3252 8 6 3.2247 5.4673 2.6450 9 8 2.6536 4.7309 3.4213 10 7 3.4181 6.7626 2.9633 11 6 4.1086 7.6668 2.0337 12 6 5.2664 8.3444 2.7735 13 6 4.7307 9.0279 4.0337 14 1 3.9717 9.7591 3.7556 15 6 5.8788 9.7347 4.7569 16 6 4.1127 7.9791 4.9613 17 1 4.8648 7.2338 5.2200 18 6 3.6069 8.6589 6.2353 19 7 3.1244 7.6418 7.1728 20 6 2.6207 8.0164 8.3898 21 1 2.5796 9.0615 8.6587 22 6 2.1630 7.0527 9.2780 23 7 2.2126 5.7789 8.9500 24 14 1.4766 7.5636 10.9384 25 1 1.5302 9.0424 11.0624 26 1 0.0677 7.1085 11.0529 27 1 2.2857 6.9460 12.0198 28 6 2.9424 7.2972 4.2465 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5137 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 3.8339 0.9767 -0.8892 35 1 3.8333 0.9768 0.8908 36 1 3.3497 3.4418 -0.8407 37 1 4.9081 3.0257 -0.0880 38 1 3.2417 5.4786 0.5109 39 1 4.7998 5.0619 1.2637 40 1 4.4980 7.0963 1.1904 41 1 3.4108 8.4223 1.6726 42 1 5.7272 9.0886 2.1239 43 1 6.0075 7.5957 3.0528 44 1 6.6379 9.0037 5.0351 45 1 6.3188 10.4820 4.0967 46 1 5.4976 10.2221 5.6544 47 1 4.4204 9.2200 6.6952 48 1 2.7923 9.3386 5.9856 49 1 3.1610 6.7031 6.9312 50 1 1.8931 5.1055 9.5708 51 1 2.5622 6.4829 4.8633 52 1 2.1489 8.0235 4.0704 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133341221.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:14 Heat of formation + Delta-G solvation = -149.290647 kcal Electronic energy + Delta-G solvation = -28820.686684 eV Core-core repulsion = 24819.476838 eV Total energy + Delta-G solvation = -4001.209846 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.39907 -39.63444 -39.05107 -38.00853 -36.62846 -35.09512 -33.53328 -32.82610 -31.65372 -30.64122 -29.52546 -28.39237 -26.76808 -24.93688 -24.23427 -23.70206 -23.51509 -22.57753 -21.26504 -20.10475 -19.15383 -18.46721 -17.95438 -17.76811 -17.11749 -16.98680 -16.75746 -16.39337 -15.89601 -15.75510 -15.58496 -15.43810 -15.16892 -14.97344 -14.46121 -14.36740 -14.20410 -14.08592 -14.01734 -13.54282 -13.38495 -13.08339 -13.04666 -12.95606 -12.80063 -12.63932 -12.60043 -12.38387 -12.20717 -12.13985 -11.99228 -11.91080 -11.88755 -11.77103 -11.30897 -11.16513 -10.97435 -10.71577 -10.68611 -10.55207 -9.65821 -9.00984 -7.95348 -5.26070 1.43504 1.46205 1.56014 1.56236 1.71797 2.54366 2.75824 2.85702 3.37470 3.51805 3.69848 3.81739 3.86732 4.03724 4.07420 4.13407 4.14349 4.20415 4.22393 4.29217 4.30769 4.33064 4.41764 4.46307 4.49837 4.53587 4.58597 4.61705 4.74025 4.75845 4.80979 4.85309 4.87940 4.97044 4.98417 5.00797 5.09812 5.14969 5.23380 5.25006 5.28998 5.45409 5.47947 5.54158 5.59989 6.07786 6.25086 6.30604 6.45111 7.18304 7.30015 8.07253 8.29024 9.28422 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.009661 B = 0.002810 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2897.679718 B = 9962.761833 C =12501.290828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.414 6.414 4 C 0.056 3.944 5 C 0.057 3.943 6 O -0.401 6.401 7 C 0.056 3.944 8 C 0.495 3.505 9 O -0.585 6.585 10 N -0.606 5.606 11 C 0.097 3.903 12 C -0.122 4.122 13 C -0.079 4.079 14 H 0.084 0.916 15 C -0.145 4.145 16 C -0.087 4.087 17 H 0.049 0.951 18 C 0.156 3.844 19 N -0.749 5.749 20 C -0.243 4.243 21 H 0.081 0.919 22 C -0.083 4.083 23 N -0.973 5.973 24 Si 0.978 3.022 25 H -0.260 1.260 26 H -0.295 1.295 27 H -0.293 1.293 28 C 0.128 3.872 29 H 0.092 0.908 30 H 0.042 0.958 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.044 0.956 34 H 0.099 0.901 35 H 0.045 0.955 36 H 0.073 0.927 37 H 0.099 0.901 38 H 0.113 0.887 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.091 0.909 42 H 0.115 0.885 43 H 0.060 0.940 44 H 0.045 0.955 45 H 0.081 0.919 46 H 0.047 0.953 47 H 0.035 0.965 48 H 0.023 0.977 49 H 0.369 0.631 50 H 0.249 0.751 51 H 0.044 0.956 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.917 0.005 -28.791 30.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.334 6.334 4 C -0.020 4.020 5 C -0.019 4.019 6 O -0.321 6.321 7 C -0.023 4.023 8 C 0.284 3.716 9 O -0.464 6.464 10 N -0.340 5.340 11 C -0.023 4.023 12 C -0.160 4.160 13 C -0.098 4.098 14 H 0.103 0.897 15 C -0.202 4.202 16 C -0.107 4.107 17 H 0.067 0.933 18 C 0.030 3.970 19 N -0.392 5.392 20 C -0.375 4.375 21 H 0.098 0.902 22 C -0.275 4.275 23 N -0.624 5.624 24 Si 0.807 3.193 25 H -0.184 1.184 26 H -0.222 1.222 27 H -0.220 1.220 28 C 0.005 3.995 29 H 0.110 0.890 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.117 0.883 35 H 0.064 0.936 36 H 0.092 0.908 37 H 0.117 0.883 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.135 0.865 41 H 0.110 0.890 42 H 0.134 0.866 43 H 0.079 0.921 44 H 0.064 0.936 45 H 0.100 0.900 46 H 0.066 0.934 47 H 0.053 0.947 48 H 0.041 0.959 49 H 0.200 0.800 50 H 0.058 0.942 51 H 0.062 0.938 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.361 -0.178 -28.142 29.358 hybrid contribution -0.473 -0.748 1.519 1.758 sum 7.887 -0.925 -26.623 27.782 Atomic orbital electron populations 1.21774 0.93608 1.03276 1.02269 1.22628 0.96049 0.83077 1.00816 1.87950 1.22054 1.27837 1.95579 1.22741 0.81351 0.96089 1.01833 1.22883 1.00348 0.92422 0.86227 1.88083 1.81701 1.22165 1.40131 1.22342 1.02309 0.83824 0.93839 1.21298 0.79119 0.81830 0.89334 1.90773 1.43966 1.58278 1.53418 1.48222 1.57839 1.08931 1.19035 1.22228 0.94749 0.93673 0.91684 1.21993 0.97175 1.00579 0.96287 1.21106 0.98169 0.95857 0.94703 0.89733 1.21855 0.97459 1.00367 1.00553 1.21560 0.96361 0.97912 0.94883 0.93295 1.20943 0.96059 0.91225 0.88813 1.42718 1.75080 1.05271 1.16112 1.19716 1.31755 0.92920 0.93088 0.90158 1.25704 1.03530 0.95281 1.02960 1.69897 1.54636 1.00377 1.37533 0.85000 0.77041 0.78022 0.79258 1.18448 1.22242 1.21978 1.21341 0.96363 0.97578 0.84256 0.88951 0.93857 0.91752 0.91094 0.93786 0.88319 0.93631 0.90844 0.88323 0.86933 0.86711 0.86516 0.89039 0.86644 0.92105 0.93600 0.90011 0.93419 0.94728 0.95920 0.79984 0.94189 0.93760 0.91149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 10.28 71.98 0.74 -1.96 16 2 C 0.05 0.94 6.66 71.98 0.48 1.42 16 3 O -0.41 -10.28 10.31 -144.34 -1.49 -11.77 16 4 C 0.06 1.02 6.32 71.98 0.45 1.47 16 5 C 0.06 0.95 6.32 71.98 0.45 1.41 16 6 O -0.40 -11.29 9.84 -125.55 -1.24 -12.53 16 7 C 0.06 1.18 4.76 71.24 0.34 1.52 16 8 C 0.50 16.68 7.78 87.66 0.68 17.36 16 9 O -0.59 -28.50 15.91 16.00 0.25 -28.25 16 10 N -0.61 -17.13 2.97 -818.99 -2.43 -19.57 16 11 C 0.10 1.44 6.34 86.36 0.55 1.99 16 12 C -0.12 -1.80 5.36 30.67 0.16 -1.63 16 13 C -0.08 -1.72 2.23 -10.76 -0.02 -1.75 16 14 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 15 C -0.15 -2.99 8.82 71.98 0.63 -2.35 16 16 C -0.09 -2.94 1.92 -10.73 -0.02 -2.96 16 17 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 18 C 0.16 6.48 5.41 86.38 0.47 6.95 16 19 N -0.75 -41.33 5.38 -343.45 -1.85 -43.18 16 20 C -0.24 -14.42 9.99 84.03 0.84 -13.58 16 21 H 0.08 4.49 7.83 -2.91 -0.02 4.47 16 22 C -0.08 -5.11 5.50 84.86 0.47 -4.64 16 23 N -0.97 -65.03 13.06 21.65 0.28 -64.75 16 24 Si 0.98 48.90 29.55 68.60 2.03 50.93 16 25 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 26 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 27 H -0.29 -14.53 7.11 99.48 0.71 -13.83 16 28 C 0.13 4.66 5.52 86.35 0.48 5.14 16 29 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.04 0.95 8.14 -2.39 -0.02 0.94 16 31 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 36 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.11 1.55 7.94 -2.39 -0.02 1.53 16 39 H 0.12 1.51 7.69 -2.39 -0.02 1.49 16 40 H 0.12 0.88 5.93 -2.39 -0.01 0.87 16 41 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.05 1.15 6.29 -2.38 -0.01 1.13 16 47 H 0.03 1.40 6.14 -2.39 -0.01 1.39 16 48 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.37 22.52 6.90 -92.71 -0.64 21.88 16 50 H 0.25 16.11 8.31 -92.71 -0.77 15.34 16 51 H 0.04 2.16 6.21 -2.39 -0.01 2.15 16 52 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 Total: -1.00 -91.57 411.35 2.50 -89.07 By element: Atomic # 1 Polarization: 31.40 SS G_CDS: 0.24 Total: 31.64 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: 6.70 Total: 8.39 kcal Atomic # 7 Polarization: -123.49 SS G_CDS: -4.00 Total: -127.49 kcal Atomic # 8 Polarization: -50.07 SS G_CDS: -2.47 Total: -52.54 kcal Atomic # 14 Polarization: 48.90 SS G_CDS: 2.03 Total: 50.93 kcal Total: -91.57 2.50 -89.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133341221.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.223 kcal (2) G-P(sol) polarization free energy of solvation -91.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds