Wall clock time and date at job start Tue Mar 31 2020 04:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42898 * 109.46830 * 2 1 4 4 C 1.42897 * 113.99880 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47191 * 179.97438 * 4 3 2 6 6 O 1.42896 * 109.47162 * 64.99561 * 5 4 3 7 7 C 1.42902 * 113.99898 * 180.02562 * 6 5 4 8 8 C 1.50704 * 109.47004 * 180.02562 * 7 6 5 9 9 O 1.21277 * 120.00183 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00006 * 180.02562 * 8 7 6 11 11 C 1.46931 * 120.63173 * 359.97438 * 10 8 7 12 12 C 1.53187 * 108.77858 * 233.63340 * 11 10 8 13 13 C 1.53036 * 109.33909 * 305.34763 * 12 11 10 14 14 H 1.08997 * 109.46472 * 181.39933 * 13 12 11 15 15 C 1.52998 * 109.46234 * 301.36304 * 13 12 11 16 16 C 1.53109 * 109.50477 * 61.34678 * 13 12 11 17 17 H 1.09001 * 109.48443 * 58.61442 * 16 13 12 18 18 C 1.52994 * 109.51765 * 178.68347 * 16 13 12 19 19 N 1.46506 * 109.47245 * 184.87235 * 18 16 13 20 20 C 1.36940 * 120.00039 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99830 * 359.97438 * 20 19 18 22 22 C 1.38813 * 119.99863 * 179.97438 * 20 19 18 23 23 N 1.31611 * 119.99920 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99907 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47241 * 89.99938 * 24 22 20 26 26 H 1.48498 * 109.46924 * 210.00210 * 24 22 20 27 27 H 1.48500 * 109.47092 * 330.00016 * 24 22 20 28 28 C 1.46925 * 120.63360 * 180.02562 * 10 8 7 29 29 H 1.08997 * 109.46877 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46772 * 299.99392 * 1 2 3 31 31 H 1.08995 * 109.47471 * 59.99817 * 1 2 3 32 32 H 1.09001 * 109.46776 * 239.99822 * 2 1 3 33 33 H 1.08995 * 109.47471 * 120.00183 * 2 1 3 34 34 H 1.08996 * 109.47704 * 59.99409 * 4 3 2 35 35 H 1.08999 * 109.46929 * 299.99387 * 4 3 2 36 36 H 1.08997 * 109.46981 * 304.99060 * 5 4 3 37 37 H 1.08999 * 109.47005 * 184.99637 * 5 4 3 38 38 H 1.09001 * 109.46952 * 60.00247 * 7 6 5 39 39 H 1.08999 * 109.46980 * 299.99917 * 7 6 5 40 40 H 1.09004 * 109.58377 * 113.84299 * 11 10 8 41 41 H 1.09003 * 109.70376 * 353.49345 * 11 10 8 42 42 H 1.09002 * 109.49796 * 65.31697 * 12 11 10 43 43 H 1.09000 * 109.49812 * 185.38420 * 12 11 10 44 44 H 1.08996 * 109.47644 * 59.99935 * 15 13 12 45 45 H 1.08999 * 109.47393 * 179.97438 * 15 13 12 46 46 H 1.09003 * 109.47046 * 299.99889 * 15 13 12 47 47 H 1.09004 * 109.47605 * 304.87435 * 18 16 13 48 48 H 1.09001 * 109.47420 * 64.87155 * 18 16 13 49 49 H 0.96998 * 119.99668 * 0.02562 * 19 18 16 50 50 H 0.96998 * 120.00040 * 180.02562 * 23 22 20 51 51 H 1.08995 * 109.58986 * 246.15399 * 28 10 8 52 52 H 1.08997 * 109.58553 * 6.44098 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8253 2.9384 -0.0012 6 8 3.3984 3.5459 1.2198 7 6 3.7191 4.9347 1.3212 8 6 3.2258 5.4691 2.6411 9 8 2.6561 4.7330 3.4186 10 7 3.4177 6.7650 2.9576 11 6 4.1066 7.6689 2.0264 12 6 5.2645 8.3481 2.7643 13 6 4.7303 9.0329 4.0244 14 1 5.5485 9.5378 4.5380 15 6 3.6638 10.0581 3.6343 16 6 4.1134 7.9840 4.9537 17 1 4.8664 7.2395 5.2123 18 6 3.6088 8.6637 6.2280 19 7 3.1248 7.6469 7.1651 20 6 2.6218 8.0216 8.3824 21 1 2.5821 9.0667 8.6518 22 6 2.1628 7.0581 9.2701 23 7 2.2116 5.7844 8.9420 24 14 1.4759 7.5692 10.9303 25 1 0.0137 7.7996 10.8113 26 1 1.7285 6.4939 11.9228 27 1 2.1394 8.8205 11.3765 28 6 2.9430 7.3005 4.2408 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.8333 0.9767 -0.8907 35 1 3.8339 0.9766 0.8892 36 1 3.3493 3.4411 -0.8430 37 1 4.9081 3.0255 -0.0911 38 1 3.2404 5.4786 0.5069 39 1 4.7997 5.0636 1.2585 40 1 3.4084 8.4251 1.6674 41 1 4.4952 7.1000 1.1817 42 1 6.0067 7.6002 3.0435 43 1 5.7244 9.0918 2.1135 44 1 2.8456 9.5536 3.1202 45 1 3.2828 10.5455 4.5317 46 1 4.1026 10.8052 2.9730 47 1 4.4230 9.2237 6.6881 48 1 2.7950 9.3447 5.9788 49 1 3.1608 6.7082 6.9233 50 1 1.8905 5.1112 9.5621 51 1 2.1498 8.0266 4.0628 52 1 2.5618 6.4868 4.8577 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133341222.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:17 Heat of formation + Delta-G solvation = -119.215217 kcal Electronic energy + Delta-G solvation = -28963.011461 eV Core-core repulsion = 24963.105783 eV Total energy + Delta-G solvation = -3999.905678 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.33610 -38.76421 -38.05274 -37.01306 -34.90553 -33.47344 -32.11934 -31.82770 -30.12001 -29.62268 -28.12357 -27.22924 -25.14202 -24.40468 -23.10581 -22.98327 -22.79307 -21.16358 -19.81389 -18.14347 -17.56820 -17.16870 -17.05048 -16.69703 -16.09725 -16.02391 -15.46158 -15.12274 -14.85944 -14.76840 -14.66666 -14.21355 -13.74927 -13.53677 -13.48193 -13.27186 -12.96760 -12.81879 -12.66651 -12.51767 -12.38413 -12.16714 -11.92675 -11.67463 -11.61121 -11.47058 -11.22084 -11.16046 -11.04863 -10.86295 -10.75720 -10.59217 -10.24777 -10.13886 -9.90418 -9.89881 -9.80536 -9.57266 -9.42729 -8.78995 -8.39135 -6.82538 -5.65508 -2.95417 2.74815 2.79906 3.43519 3.50057 3.54251 3.56731 3.71200 4.50251 4.62700 4.68956 4.73699 4.82720 4.83749 4.88702 4.91412 4.94664 4.99109 5.06213 5.13164 5.14178 5.18091 5.20935 5.28155 5.32244 5.42343 5.54312 5.59015 5.65357 5.68430 5.71317 5.72254 5.84244 5.91968 5.95091 5.98375 6.04051 6.20869 6.35277 6.37804 6.41004 6.63030 6.65439 6.82142 6.89834 6.94485 7.03074 7.55328 7.77964 8.39067 8.52006 9.62830 10.21320 10.55345 11.56713 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.009771 B = 0.002828 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.949357 B = 9897.904429 C =12329.094887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.380 6.380 4 C 0.065 3.935 5 C 0.062 3.938 6 O -0.352 6.352 7 C 0.047 3.953 8 C 0.509 3.491 9 O -0.505 6.505 10 N -0.611 5.611 11 C 0.105 3.895 12 C -0.129 4.129 13 C -0.085 4.085 14 H 0.073 0.927 15 C -0.153 4.153 16 C -0.102 4.102 17 H 0.073 0.927 18 C 0.161 3.839 19 N -0.733 5.733 20 C -0.242 4.242 21 H 0.069 0.931 22 C -0.013 4.013 23 N -0.928 5.928 24 Si 0.906 3.094 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.283 1.283 28 C 0.122 3.878 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.044 0.956 33 H 0.049 0.951 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.073 0.927 44 H 0.057 0.943 45 H 0.063 0.937 46 H 0.049 0.951 47 H 0.020 0.980 48 H 0.023 0.977 49 H 0.385 0.615 50 H 0.255 0.745 51 H 0.068 0.932 52 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.481 -2.200 -25.827 26.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.299 6.299 4 C -0.012 4.012 5 C -0.015 4.015 6 O -0.270 6.270 7 C -0.033 4.033 8 C 0.295 3.705 9 O -0.379 6.379 10 N -0.347 5.347 11 C -0.018 4.018 12 C -0.167 4.167 13 C -0.104 4.104 14 H 0.092 0.908 15 C -0.210 4.210 16 C -0.122 4.122 17 H 0.092 0.908 18 C 0.033 3.967 19 N -0.378 5.378 20 C -0.373 4.373 21 H 0.087 0.913 22 C -0.209 4.209 23 N -0.577 5.577 24 Si 0.737 3.263 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.209 1.209 28 C 0.001 3.999 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.076 0.924 45 H 0.082 0.918 46 H 0.068 0.932 47 H 0.038 0.962 48 H 0.040 0.960 49 H 0.219 0.781 50 H 0.065 0.935 51 H 0.086 0.914 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.880 -2.486 -25.111 25.910 hybrid contribution 0.095 -0.083 0.595 0.608 sum 5.975 -2.569 -24.516 25.364 Atomic orbital electron populations 1.21740 0.93676 1.02131 1.03396 1.22457 0.95834 0.83809 0.99838 1.87989 1.20300 1.26258 1.95355 1.22476 0.82506 0.95307 1.00886 1.22576 0.98272 0.92967 0.87645 1.88128 1.80672 1.20771 1.37471 1.22242 1.00109 0.84401 0.96525 1.20150 0.80370 0.81880 0.88065 1.90807 1.40278 1.56204 1.50572 1.48101 1.58513 1.08498 1.19630 1.21765 0.94733 0.93510 0.91811 1.21947 0.97386 0.99913 0.97502 1.21080 0.98253 0.95897 0.95146 0.90816 1.21989 0.98861 0.98374 1.01790 1.21695 0.97628 0.97363 0.95504 0.90835 1.20675 0.96032 0.92130 0.87886 1.42431 1.74870 1.04868 1.15632 1.19189 1.33288 0.92485 0.92347 0.91273 1.24761 1.02171 0.95289 0.98716 1.69675 1.52526 0.99099 1.36364 0.86214 0.78877 0.77127 0.84095 1.21754 1.21827 1.20857 1.21722 0.95838 0.99482 0.82887 0.91195 0.91435 0.92006 0.93732 0.93242 0.91863 0.92154 0.92338 0.91669 0.90578 0.90613 0.90950 0.90548 0.91484 0.90856 0.92418 0.91754 0.93171 0.96215 0.95964 0.78082 0.93483 0.91374 0.87892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.28 37.16 0.38 -0.95 16 2 C 0.06 0.54 6.66 37.16 0.25 0.79 16 3 O -0.38 -4.70 10.31 -40.09 -0.41 -5.11 16 4 C 0.07 0.62 6.32 37.16 0.23 0.86 16 5 C 0.06 0.59 6.32 37.16 0.23 0.83 16 6 O -0.35 -5.05 9.84 -59.73 -0.59 -5.64 16 7 C 0.05 0.56 4.77 36.01 0.17 0.73 16 8 C 0.51 8.40 7.78 -10.99 -0.09 8.31 16 9 O -0.51 -11.31 15.91 -14.35 -0.23 -11.54 16 10 N -0.61 -8.77 2.97 -172.80 -0.51 -9.28 16 11 C 0.10 1.01 5.87 -3.71 -0.02 0.98 16 12 C -0.13 -1.23 5.62 -26.62 -0.15 -1.38 16 13 C -0.08 -1.03 2.71 -90.55 -0.25 -1.27 16 14 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 15 C -0.15 -1.70 8.12 37.16 0.30 -1.40 16 16 C -0.10 -1.69 2.15 -90.49 -0.19 -1.88 16 17 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 18 C 0.16 3.27 5.19 -4.04 -0.02 3.24 16 19 N -0.73 -19.30 5.38 -59.90 -0.32 -19.62 16 20 C -0.24 -7.00 9.99 -15.06 -0.15 -7.15 16 21 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 22 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 23 N -0.93 -29.53 13.06 55.49 0.72 -28.81 16 24 Si 0.91 23.19 29.55 -169.99 -5.02 18.17 16 25 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 26 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 27 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 28 C 0.12 2.11 5.05 -3.73 -0.02 2.09 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.68 7.94 -51.93 -0.41 0.27 16 39 H 0.08 0.67 7.70 -51.93 -0.40 0.27 16 40 H 0.07 0.63 6.69 -51.93 -0.35 0.28 16 41 H 0.08 0.53 5.95 -51.93 -0.31 0.22 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.65 4.98 -51.93 -0.26 0.39 16 45 H 0.06 0.80 6.57 -51.93 -0.34 0.46 16 46 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.02 0.45 6.73 -51.93 -0.35 0.10 16 49 H 0.39 10.92 6.89 -40.82 -0.28 10.63 16 50 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 51 H 0.07 1.14 6.70 -51.93 -0.35 0.79 16 52 H 0.10 2.27 6.21 -51.93 -0.32 1.95 16 LS Contribution 405.28 15.07 6.11 6.11 Total: -1.00 -37.47 405.28 -8.92 -46.39 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -9.26 Total: 6.02 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: 0.59 Total: 3.31 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: -0.11 Total: -57.71 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -1.23 Total: -22.29 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -5.02 Total: 18.17 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -37.47 -8.92 -46.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133341222.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.821 kcal (2) G-P(sol) polarization free energy of solvation -37.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds