Wall clock time and date at job start Tue Mar 31 2020 04:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42905 * 109.46911 * 2 1 4 4 C 1.42901 * 113.99688 * 179.97438 * 3 2 1 5 5 C 1.53009 * 109.46824 * 179.97438 * 4 3 2 6 6 O 1.42899 * 109.47113 * 64.99778 * 5 4 3 7 7 C 1.42903 * 113.99629 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.46878 * 179.97438 * 7 6 5 9 9 O 1.21280 * 119.99781 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99795 * 179.97438 * 8 7 6 11 11 C 1.46920 * 120.63110 * 0.02562 * 10 8 7 12 12 C 1.53193 * 108.77389 * 126.36407 * 11 10 8 13 13 C 1.53040 * 109.30943 * 54.63814 * 12 11 10 14 14 H 1.08998 * 109.46254 * 58.65341 * 13 12 11 15 15 C 1.53004 * 109.46097 * 178.61469 * 13 12 11 16 16 C 1.53046 * 109.54022 * 298.62950 * 13 12 11 17 17 H 1.09002 * 109.49744 * 301.38765 * 16 13 12 18 18 C 1.52990 * 109.50018 * 181.31781 * 16 13 12 19 19 N 1.46505 * 109.47187 * 174.99988 * 18 16 13 20 20 C 1.36934 * 120.00219 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99626 * 0.02562 * 20 19 18 22 22 C 1.38810 * 120.00148 * 180.02562 * 20 19 18 23 23 N 1.31616 * 120.00149 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 120.00020 * 0.02562 * 22 20 19 25 25 H 1.48493 * 109.47291 * 89.99672 * 24 22 20 26 26 H 1.48493 * 109.47286 * 210.00193 * 24 22 20 27 27 H 1.48507 * 109.47049 * 329.99874 * 24 22 20 28 28 C 1.46928 * 120.62698 * 179.72199 * 10 8 7 29 29 H 1.09000 * 109.46947 * 60.00506 * 1 2 3 30 30 H 1.09008 * 109.47076 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47927 * 300.00640 * 1 2 3 32 32 H 1.08998 * 109.47927 * 239.99360 * 2 1 3 33 33 H 1.09001 * 109.46903 * 119.98939 * 2 1 3 34 34 H 1.09000 * 109.47317 * 59.99739 * 4 3 2 35 35 H 1.09002 * 109.47468 * 299.99096 * 4 3 2 36 36 H 1.09007 * 109.46516 * 304.99711 * 5 4 3 37 37 H 1.09004 * 109.47113 * 185.00179 * 5 4 3 38 38 H 1.09002 * 109.47382 * 59.99956 * 7 6 5 39 39 H 1.09001 * 109.46938 * 299.99942 * 7 6 5 40 40 H 1.08998 * 109.58454 * 246.15028 * 11 10 8 41 41 H 1.09001 * 109.58711 * 6.58105 * 11 10 8 42 42 H 1.09007 * 109.49938 * 174.58337 * 12 11 10 43 43 H 1.08998 * 109.50312 * 294.68437 * 12 11 10 44 44 H 1.08997 * 109.47277 * 59.99448 * 15 13 12 45 45 H 1.08999 * 109.47462 * 180.02562 * 15 13 12 46 46 H 1.09003 * 109.46802 * 299.99651 * 15 13 12 47 47 H 1.08991 * 109.47626 * 295.00242 * 18 16 13 48 48 H 1.09004 * 109.47276 * 55.00663 * 18 16 13 49 49 H 0.96997 * 119.99610 * 0.02562 * 19 18 16 50 50 H 0.96995 * 120.00253 * 179.97438 * 23 22 20 51 51 H 1.09003 * 109.58862 * 353.41739 * 28 10 8 52 52 H 1.08997 * 109.58643 * 113.84800 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8253 2.9385 -0.0001 6 8 3.3973 3.5463 1.2203 7 6 3.7180 4.9352 1.3216 8 6 3.2225 5.4702 2.6404 9 8 2.6514 4.7345 3.4172 10 7 3.4149 6.7661 2.9570 11 6 4.1054 7.6694 2.0265 12 6 3.2179 8.8930 1.7772 13 6 2.8500 9.5328 3.1179 14 1 3.7598 9.8189 3.6456 15 6 1.9919 10.7754 2.8712 16 6 2.0631 8.5300 3.9649 17 1 1.1653 8.2251 3.4272 18 6 1.6675 9.1815 5.2914 19 7 0.8141 8.2641 6.0507 20 6 0.3338 8.6337 7.2786 21 1 0.5838 9.6017 7.6872 22 6 -0.4744 7.7643 7.9982 23 7 -0.9365 8.1197 9.1782 24 14 -0.9062 6.0898 7.2918 25 1 0.1136 5.0964 7.7142 26 1 -2.2410 5.6715 7.7902 27 1 -0.9344 6.1703 5.8092 28 6 2.9321 7.3038 4.2363 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3635 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8932 -0.5137 0.8901 34 1 3.8340 0.9764 -0.8891 35 1 3.8332 0.9769 0.8909 36 1 3.3498 3.4409 -0.8426 37 1 4.9082 3.0256 -0.0893 38 1 3.2400 5.4788 0.5067 39 1 4.7986 5.0640 1.2597 40 1 5.0527 7.9877 2.4616 41 1 4.2888 7.1530 1.0842 42 1 3.7579 9.6156 1.1653 43 1 2.3095 8.5843 1.2599 44 1 1.0823 10.4899 2.3430 45 1 1.7301 11.2316 3.8259 46 1 2.5526 11.4904 2.2690 47 1 2.5647 9.4046 5.8686 48 1 1.1231 10.1051 5.0945 49 1 0.5893 7.3949 5.6835 50 1 -1.5015 7.5124 9.6809 51 1 2.3416 6.5462 4.7516 52 1 3.7817 7.5916 4.8555 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133341224.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:21 Heat of formation + Delta-G solvation = -119.103790 kcal Electronic energy + Delta-G solvation = -29031.286347 eV Core-core repulsion = 25031.385501 eV Total energy + Delta-G solvation = -3999.900846 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.37048 -38.81307 -38.10417 -37.12238 -35.14230 -33.77268 -32.20656 -31.92492 -30.43306 -29.86239 -28.67407 -27.39197 -25.43822 -23.35348 -23.03944 -22.93941 -22.84383 -21.11802 -20.19475 -19.12421 -17.68326 -17.48347 -17.24036 -16.84253 -16.27804 -16.10968 -15.52851 -15.02547 -14.90584 -14.86712 -14.38219 -14.04648 -13.97734 -13.82057 -13.45308 -13.37353 -13.10195 -12.99521 -12.71268 -12.59141 -12.45411 -12.24520 -11.98700 -11.81913 -11.74929 -11.67681 -11.53925 -11.26141 -11.22768 -10.96867 -10.84759 -10.63411 -10.33460 -10.12172 -9.99929 -9.98300 -9.87787 -9.60103 -9.48713 -8.81714 -8.59136 -7.14625 -5.69444 -3.04673 2.59731 2.64886 3.36491 3.50647 3.55693 3.59317 3.60007 4.37790 4.54199 4.64819 4.69545 4.73962 4.76094 4.78192 4.79383 4.83226 4.90679 4.95623 5.05457 5.06149 5.07101 5.11063 5.18227 5.24521 5.34428 5.48492 5.53701 5.55581 5.61403 5.63095 5.67081 5.71396 5.77763 5.86021 5.86959 5.90839 6.03708 6.13127 6.26366 6.36541 6.38767 6.49217 6.73071 6.79381 6.80721 6.95454 7.38788 8.06212 8.22043 8.49692 9.29013 10.02140 10.21331 11.48818 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.009105 B = 0.003289 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3074.366530 B = 8509.921485 C =10966.411011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.058 3.942 3 O -0.380 6.380 4 C 0.065 3.935 5 C 0.062 3.938 6 O -0.353 6.353 7 C 0.047 3.953 8 C 0.511 3.489 9 O -0.511 6.511 10 N -0.612 5.612 11 C 0.106 3.894 12 C -0.130 4.130 13 C -0.083 4.083 14 H 0.073 0.927 15 C -0.149 4.149 16 C -0.107 4.107 17 H 0.074 0.926 18 C 0.163 3.837 19 N -0.757 5.757 20 C -0.244 4.244 21 H 0.090 0.910 22 C 0.006 3.994 23 N -0.935 5.935 24 Si 0.881 3.119 25 H -0.282 1.282 26 H -0.291 1.291 27 H -0.276 1.276 28 C 0.120 3.880 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.045 0.955 33 H 0.049 0.951 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.053 0.947 45 H 0.067 0.933 46 H 0.050 0.950 47 H 0.027 0.973 48 H 0.036 0.964 49 H 0.362 0.638 50 H 0.259 0.741 51 H 0.097 0.903 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.408 -7.282 -26.282 30.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.299 6.299 4 C -0.012 4.012 5 C -0.015 4.015 6 O -0.271 6.271 7 C -0.033 4.033 8 C 0.297 3.703 9 O -0.385 6.385 10 N -0.348 5.348 11 C -0.017 4.017 12 C -0.168 4.168 13 C -0.102 4.102 14 H 0.092 0.908 15 C -0.206 4.206 16 C -0.127 4.127 17 H 0.092 0.908 18 C 0.036 3.964 19 N -0.403 5.403 20 C -0.373 4.373 21 H 0.108 0.892 22 C -0.190 4.190 23 N -0.583 5.583 24 Si 0.711 3.289 25 H -0.208 1.208 26 H -0.217 1.217 27 H -0.202 1.202 28 C -0.001 4.001 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.086 0.914 44 H 0.072 0.928 45 H 0.086 0.914 46 H 0.069 0.931 47 H 0.045 0.955 48 H 0.053 0.947 49 H 0.195 0.805 50 H 0.069 0.931 51 H 0.115 0.885 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 13.827 -7.524 -25.501 29.968 hybrid contribution -0.017 -1.240 -0.688 1.419 sum 13.810 -8.764 -26.189 30.877 Atomic orbital electron populations 1.21744 0.93626 1.02173 1.03451 1.22460 0.95873 0.83751 0.99820 1.87999 1.20245 1.26308 1.95351 1.22476 0.82572 0.95252 1.00873 1.22591 0.98266 0.92990 0.87625 1.88120 1.80705 1.20698 1.37619 1.22237 1.00130 0.84469 0.96448 1.20185 0.80083 0.81950 0.88051 1.90780 1.40424 1.56487 1.50817 1.48122 1.58299 1.08399 1.19987 1.21772 0.95645 0.91315 0.92970 1.22001 1.00163 0.96619 0.98030 1.21074 0.98998 0.95182 0.94991 0.90814 1.21890 0.99555 0.96837 1.02317 1.21702 0.98338 0.94708 0.97927 0.90801 1.20702 0.93857 0.93068 0.88811 1.42789 1.60048 1.17228 1.20246 1.19028 1.24162 1.02029 0.92120 0.89233 1.24641 0.99850 0.98061 0.96404 1.69702 1.39015 1.36689 1.12932 0.86604 0.77889 0.85659 0.78755 1.20843 1.21745 1.20235 1.21631 0.98408 0.96569 0.83534 0.91940 0.91151 0.91461 0.93670 0.93302 0.91798 0.92236 0.92241 0.91627 0.90386 0.90525 0.90992 0.90331 0.90647 0.91416 0.92770 0.91441 0.93107 0.95473 0.94663 0.80503 0.93107 0.88501 0.91121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.28 37.15 0.38 -0.94 16 2 C 0.06 0.52 6.66 37.15 0.25 0.77 16 3 O -0.38 -4.57 10.31 -40.08 -0.41 -4.98 16 4 C 0.07 0.58 6.32 37.16 0.23 0.82 16 5 C 0.06 0.55 6.32 37.16 0.23 0.78 16 6 O -0.35 -4.77 9.84 -59.73 -0.59 -5.36 16 7 C 0.05 0.51 4.76 36.01 0.17 0.68 16 8 C 0.51 7.90 7.78 -10.98 -0.09 7.81 16 9 O -0.51 -10.80 15.91 -14.35 -0.23 -11.03 16 10 N -0.61 -8.17 2.98 -173.05 -0.52 -8.69 16 11 C 0.11 0.91 6.34 -3.71 -0.02 0.89 16 12 C -0.13 -1.14 5.36 -26.61 -0.14 -1.28 16 13 C -0.08 -0.94 2.23 -90.57 -0.20 -1.14 16 14 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 15 C -0.15 -1.64 8.82 37.16 0.33 -1.31 16 16 C -0.11 -1.66 1.90 -90.74 -0.17 -1.83 16 17 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 18 C 0.16 3.15 5.41 -4.04 -0.02 3.13 16 19 N -0.76 -18.78 5.18 -59.91 -0.31 -19.09 16 20 C -0.24 -7.14 10.47 -15.06 -0.16 -7.30 16 21 H 0.09 2.77 8.06 -52.49 -0.42 2.34 16 22 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 23 N -0.94 -30.39 13.97 55.49 0.78 -29.62 16 24 Si 0.88 23.93 27.74 -169.99 -4.71 19.22 16 25 H -0.28 -7.72 7.11 56.52 0.40 -7.32 16 26 H -0.29 -7.90 7.11 56.52 0.40 -7.50 16 27 H -0.28 -7.29 6.52 56.52 0.37 -6.92 16 28 C 0.12 1.94 5.49 -3.95 -0.02 1.92 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.66 7.69 -51.93 -0.40 0.26 16 39 H 0.08 0.58 7.94 -51.93 -0.41 0.17 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.47 5.93 -51.93 -0.31 0.16 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.07 0.83 6.29 -51.93 -0.33 0.50 16 46 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.04 0.68 6.14 -51.93 -0.32 0.36 16 49 H 0.36 9.11 4.75 -40.82 -0.19 8.92 16 50 H 0.26 8.03 8.31 -40.82 -0.34 7.69 16 51 H 0.10 1.95 6.20 -51.93 -0.32 1.63 16 52 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 408.18 15.07 6.15 6.15 Total: -1.00 -38.34 408.18 -8.65 -46.99 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -9.48 Total: 3.31 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: 0.67 Total: 3.09 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: -0.05 Total: -57.39 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -1.23 Total: -21.37 kcal Atomic # 14 Polarization: 23.93 SS G_CDS: -4.71 Total: 19.22 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -38.34 -8.65 -46.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133341224.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.109 kcal (2) G-P(sol) polarization free energy of solvation -38.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds