Wall clock time and date at job start Tue Mar 31 2020 04:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42897 * 109.46861 * 2 1 4 4 C 1.42900 * 113.99930 * 184.69336 * 3 2 1 5 5 H 1.09001 * 109.46935 * 354.75677 * 4 3 2 6 6 C 1.50700 * 109.47388 * 234.75726 * 4 3 2 7 7 O 1.21285 * 119.99603 * 353.58252 * 6 4 3 8 8 N 1.34774 * 120.00346 * 173.59121 * 6 4 3 9 9 C 1.46498 * 120.00244 * 183.59757 * 8 6 4 10 10 C 1.52997 * 109.47130 * 179.97438 * 9 8 6 11 11 H 1.09004 * 108.57114 * 62.05499 * 10 9 8 12 12 C 1.46922 * 108.61722 * 179.97438 * 10 9 8 13 13 N 1.50124 * 106.77703 * 177.91717 * 12 10 9 14 14 C 1.36939 * 120.63101 * 111.32073 * 13 12 10 15 15 H 1.07996 * 119.99564 * 155.88789 * 14 13 12 16 16 C 1.38810 * 120.00045 * 335.88591 * 14 13 12 17 17 N 1.31615 * 120.00502 * 339.27623 * 16 14 13 18 18 Si 1.86808 * 119.99772 * 159.28060 * 16 14 13 19 19 H 1.48505 * 109.46855 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47073 * 119.99644 * 18 16 14 21 21 H 1.48492 * 109.46885 * 239.99693 * 18 16 14 22 22 C 1.43417 * 118.72956 * 291.34755 * 13 12 10 23 23 C 1.55323 * 116.08657 * 89.46079 * 22 13 12 24 24 C 1.55047 * 108.94772 * 319.17571 * 23 22 13 25 25 O 1.39648 * 110.66152 * 322.44218 * 24 23 22 26 26 C 1.53005 * 109.47225 * 114.75157 * 4 3 2 27 27 C 1.52994 * 109.47034 * 299.56971 * 26 4 3 28 28 C 1.53002 * 109.46715 * 59.57289 * 26 4 3 29 29 H 1.08998 * 109.47317 * 60.00178 * 1 2 3 30 30 H 1.08998 * 109.47080 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47093 * 300.00341 * 1 2 3 32 32 H 1.09001 * 109.47093 * 239.99659 * 2 1 3 33 33 H 1.09002 * 109.46686 * 119.99485 * 2 1 3 34 34 H 0.96998 * 120.00051 * 3.58575 * 8 6 4 35 35 H 1.09007 * 109.47012 * 59.99116 * 9 8 6 36 36 H 1.09003 * 109.46911 * 299.99694 * 9 8 6 37 37 H 1.09001 * 109.99447 * 58.60456 * 12 10 9 38 38 H 1.08993 * 109.99288 * 297.23247 * 12 10 9 39 39 H 0.96993 * 120.00545 * 179.97438 * 17 16 14 40 40 H 1.09006 * 108.12520 * 211.11351 * 22 13 12 41 41 H 1.08997 * 108.12528 * 327.80563 * 22 13 12 42 42 H 1.08997 * 109.57365 * 79.17255 * 23 22 13 43 43 H 1.09007 * 109.57336 * 199.54017 * 23 22 13 44 44 H 1.08995 * 109.34375 * 202.05496 * 24 23 22 45 45 H 1.09003 * 109.08391 * 82.66453 * 24 23 22 46 46 H 1.09003 * 109.47117 * 179.57084 * 26 4 3 47 47 H 1.09003 * 109.47220 * 65.62773 * 27 26 4 48 48 H 1.08999 * 109.46664 * 185.62143 * 27 26 4 49 49 H 1.08992 * 109.47549 * 305.62659 * 27 26 4 50 50 H 1.09000 * 109.47117 * 64.27341 * 28 26 4 51 51 H 1.08996 * 109.46831 * 184.27854 * 28 26 4 52 52 H 1.09003 * 109.47202 * 304.27349 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4267 1.4616 -0.1068 5 1 3.8746 0.4684 -0.0744 6 6 3.9519 2.2871 1.0394 7 8 3.1787 2.8302 1.7998 8 7 5.2807 2.4220 1.2195 9 6 5.7919 3.1583 2.3782 10 6 7.3215 3.1622 2.3457 11 1 7.6483 3.6781 1.4428 12 6 7.8136 3.9049 3.5139 13 7 9.3128 3.8390 3.4693 14 6 10.0533 4.9619 3.2126 15 1 11.0771 5.0225 3.5509 16 6 9.4879 6.0222 2.5175 17 7 8.4281 5.8239 1.7627 18 14 10.2315 7.7305 2.6534 19 1 11.4082 7.6876 3.5583 20 1 10.6574 8.1934 1.3083 21 1 9.2195 8.6685 3.2023 22 6 9.9545 2.5773 3.7002 23 6 10.1955 1.6939 2.4456 24 6 8.9489 1.7731 1.5271 25 8 7.7784 1.8149 2.2875 26 6 3.7857 2.1399 -1.4305 27 6 3.2619 1.2963 -2.5943 28 6 3.1481 3.5299 -1.4805 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 5.8987 2.0313 0.5820 35 1 5.4494 2.6772 3.2944 36 1 5.4249 4.1842 2.3475 37 1 7.4475 3.4428 4.4307 38 1 7.4846 4.9427 3.4613 39 1 8.0329 6.5649 1.2773 40 1 10.9189 2.7685 4.1708 41 1 9.3438 2.0098 4.4024 42 1 11.0716 2.0555 1.9073 43 1 10.3540 0.6599 2.7520 44 1 8.9238 0.8990 0.8765 45 1 9.0130 2.6735 0.9161 46 1 4.8688 2.2340 -1.5085 47 1 2.1722 1.2851 -2.5735 48 1 3.6028 1.7256 -3.5364 49 1 3.6375 0.2773 -2.5024 50 1 3.5774 4.1550 -0.6975 51 1 3.3399 3.9828 -2.4532 52 1 2.0726 3.4421 -1.3264 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149721532.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:15 Heat of formation + Delta-G solvation = -109.505192 kcal Electronic energy + Delta-G solvation = -30454.790793 eV Core-core repulsion = 26455.306173 eV Total energy + Delta-G solvation = -3999.484620 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.08996 -39.01902 -37.67259 -35.06988 -34.99222 -34.39056 -32.16270 -31.27062 -31.16120 -28.85647 -27.43544 -27.12903 -25.37640 -24.95085 -22.96770 -22.55457 -21.07649 -20.75591 -19.79512 -19.56612 -17.50732 -16.97264 -16.80354 -16.02840 -15.98094 -15.36263 -14.88658 -14.85579 -14.61698 -14.50672 -14.16594 -13.95523 -13.79547 -13.29323 -13.14882 -12.97366 -12.60421 -12.53076 -12.48185 -12.23769 -12.12290 -12.07917 -11.94062 -11.53581 -11.44442 -11.24031 -11.19251 -11.01276 -10.87363 -10.80409 -10.75727 -10.47682 -10.16560 -10.05523 -9.97015 -9.70202 -9.52199 -9.16092 -8.81803 -8.64143 -8.51335 -6.84398 -5.94124 -3.31532 2.88235 3.11572 3.32011 3.41690 3.43192 3.88179 4.42600 4.59860 4.65944 4.68368 4.84467 4.89680 4.99013 5.10967 5.18460 5.22189 5.26958 5.30807 5.44571 5.51843 5.62650 5.70150 5.72748 5.75616 5.80220 5.84952 5.90273 5.95860 5.97811 5.99548 6.12806 6.17749 6.31548 6.37829 6.40917 6.46572 6.56468 6.64849 6.69000 6.79866 6.89889 6.93584 7.03920 7.10049 7.29725 7.71605 7.85231 8.10858 8.30250 8.53933 9.05248 9.73809 10.28039 11.15106 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.015977 B = 0.003188 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.121091 B = 8779.836487 C = 9442.810101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 O -0.350 6.350 4 C 0.079 3.921 5 H 0.084 0.916 6 C 0.502 3.498 7 O -0.529 6.529 8 N -0.713 5.713 9 C 0.122 3.878 10 C 0.061 3.939 11 H 0.108 0.892 12 C 0.143 3.857 13 N -0.588 5.588 14 C -0.249 4.249 15 H 0.070 0.930 16 C 0.003 3.997 17 N -0.905 5.905 18 Si 0.902 3.098 19 H -0.279 1.279 20 H -0.291 1.291 21 H -0.288 1.288 22 C 0.161 3.839 23 C -0.172 4.172 24 C 0.067 3.933 25 O -0.370 6.370 26 C -0.101 4.101 27 C -0.144 4.144 28 C -0.144 4.144 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.399 0.601 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.020 0.980 38 H 0.102 0.898 39 H 0.255 0.745 40 H 0.033 0.967 41 H 0.031 0.969 42 H 0.057 0.943 43 H 0.049 0.951 44 H 0.051 0.949 45 H 0.063 0.937 46 H 0.083 0.917 47 H 0.061 0.939 48 H 0.059 0.941 49 H 0.052 0.948 50 H 0.057 0.943 51 H 0.054 0.946 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.334 -11.913 -7.735 16.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.024 4.024 3 O -0.268 6.268 4 C 0.017 3.983 5 H 0.102 0.898 6 C 0.286 3.714 7 O -0.405 6.405 8 N -0.365 5.365 9 C -0.002 4.002 10 C 0.002 3.998 11 H 0.125 0.875 12 C 0.019 3.981 13 N -0.308 5.308 14 C -0.379 4.379 15 H 0.087 0.913 16 C -0.195 4.195 17 N -0.551 5.551 18 Si 0.732 3.268 19 H -0.204 1.204 20 H -0.219 1.219 21 H -0.215 1.215 22 C 0.032 3.968 23 C -0.213 4.213 24 C -0.011 4.011 25 O -0.289 6.289 26 C -0.120 4.120 27 C -0.202 4.202 28 C -0.201 4.201 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.233 0.767 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.038 0.962 38 H 0.120 0.880 39 H 0.065 0.935 40 H 0.051 0.949 41 H 0.050 0.950 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.081 0.919 46 H 0.102 0.898 47 H 0.080 0.920 48 H 0.078 0.922 49 H 0.071 0.929 50 H 0.076 0.924 51 H 0.073 0.927 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.196 -11.376 -7.111 16.850 hybrid contribution 1.107 0.584 -0.505 1.350 sum -9.089 -10.792 -7.616 16.033 Atomic orbital electron populations 1.21714 0.93618 1.02025 1.03300 1.22636 0.95859 0.83975 0.99916 1.88019 1.18667 1.25839 1.94260 1.22032 0.83607 0.99027 0.93646 0.89773 1.20657 0.82666 0.81961 0.86100 1.90692 1.56465 1.47020 1.46327 1.45894 1.06151 1.56363 1.28125 1.21698 0.94411 0.96569 0.87487 1.22203 0.90251 0.82644 1.04711 0.87470 1.20734 0.83501 1.00968 0.92942 1.44130 1.01134 1.03481 1.82060 1.19287 0.96931 0.92677 1.28977 0.91263 1.24881 0.98626 0.99355 0.96645 1.69878 1.24823 1.30545 1.29810 0.86232 0.78541 0.84708 0.77324 1.20383 1.21859 1.21500 1.20374 0.96037 0.86831 0.93579 1.23557 0.97858 0.99282 1.00616 1.22320 0.85530 1.00344 0.92908 1.87505 1.40387 1.27388 1.73573 1.21445 1.00844 0.96753 0.92997 1.21808 1.01836 0.99041 0.97482 1.21744 1.01828 0.94931 1.01602 0.91905 0.91243 0.91628 0.93296 0.93424 0.76723 0.92161 0.90379 0.96216 0.87955 0.93497 0.94872 0.95008 0.92472 0.93257 0.93119 0.91883 0.89831 0.91971 0.92181 0.92926 0.92429 0.92655 0.91591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.28 37.16 0.38 -0.90 16 2 C 0.05 0.53 6.29 37.16 0.23 0.76 16 3 O -0.35 -4.69 8.21 -55.06 -0.45 -5.14 16 4 C 0.08 0.99 2.38 -27.88 -0.07 0.93 16 5 H 0.08 0.88 7.61 -51.93 -0.40 0.48 16 6 C 0.50 8.25 6.00 -10.99 -0.07 8.18 16 7 O -0.53 -10.89 16.52 -14.27 -0.24 -11.13 16 8 N -0.71 -11.38 5.38 -60.29 -0.32 -11.70 16 9 C 0.12 2.27 5.27 -4.04 -0.02 2.25 16 10 C 0.06 1.21 2.01 -29.64 -0.06 1.15 16 11 H 0.11 2.41 5.22 -51.93 -0.27 2.14 16 12 C 0.14 3.22 4.71 -4.93 -0.02 3.20 16 13 N -0.59 -13.95 2.61 -174.50 -0.46 -14.40 16 14 C -0.25 -6.44 9.61 -15.06 -0.14 -6.59 16 15 H 0.07 1.80 7.89 -52.49 -0.41 1.39 16 16 C 0.00 0.07 4.88 -17.43 -0.09 -0.01 16 17 N -0.91 -23.45 9.64 55.49 0.54 -22.92 16 18 Si 0.90 20.79 29.60 -169.99 -5.03 15.76 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 22 C 0.16 3.35 5.33 -4.44 -0.02 3.33 16 23 C -0.17 -3.15 6.74 -24.42 -0.16 -3.31 16 24 C 0.07 1.21 6.37 38.24 0.24 1.46 16 25 O -0.37 -7.05 9.34 -31.96 -0.30 -7.35 16 26 C -0.10 -1.12 2.78 -90.62 -0.25 -1.37 16 27 C -0.14 -1.26 8.64 37.15 0.32 -0.94 16 28 C -0.14 -1.80 8.78 37.16 0.33 -1.48 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.40 7.86 -51.93 -0.41 -0.01 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.40 5.63 7.96 -40.82 -0.33 5.31 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.10 2.53 6.06 -51.93 -0.31 2.22 16 39 H 0.25 6.53 8.31 -40.82 -0.34 6.19 16 40 H 0.03 0.68 7.96 -51.93 -0.41 0.27 16 41 H 0.03 0.65 7.98 -51.93 -0.41 0.23 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.06 1.29 6.66 -51.93 -0.35 0.95 16 46 H 0.08 0.87 7.91 -51.93 -0.41 0.46 16 47 H 0.06 0.56 7.86 -51.93 -0.41 0.15 16 48 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 49 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 50 H 0.06 0.85 7.39 -51.93 -0.38 0.47 16 51 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 52 H 0.07 0.87 7.54 -51.93 -0.39 0.48 16 LS Contribution 402.78 15.07 6.07 6.07 Total: -1.00 -29.24 402.78 -9.12 -38.36 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -9.53 Total: 5.79 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: 0.60 Total: 6.66 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: -0.24 Total: -49.02 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -0.99 Total: -23.62 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -29.24 -9.12 -38.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149721532.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.143 kcal (2) G-P(sol) polarization free energy of solvation -29.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds