Wall clock time and date at job start Tue Mar 31 2020 04:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42906 * 109.47071 * 2 1 4 4 C 1.42901 * 114.00093 * 181.82268 * 3 2 1 5 5 H 1.08997 * 109.47006 * 344.95853 * 4 3 2 6 6 C 1.50701 * 109.46971 * 224.96213 * 4 3 2 7 7 O 1.21278 * 120.00267 * 355.27353 * 6 4 3 8 8 N 1.34778 * 119.99888 * 174.99992 * 6 4 3 9 9 C 1.46494 * 119.99954 * 179.97438 * 8 6 4 10 10 C 1.52997 * 109.47198 * 180.02562 * 9 8 6 11 11 H 1.09001 * 109.40820 * 304.84121 * 10 9 8 12 12 C 1.54300 * 109.40854 * 185.00395 * 10 9 8 13 13 N 1.48180 * 110.69316 * 200.49440 * 12 10 9 14 14 C 1.36940 * 118.51201 * 138.77017 * 13 12 10 15 15 H 1.08001 * 120.00028 * 320.18895 * 14 13 12 16 16 C 1.38812 * 119.99711 * 140.17835 * 14 13 12 17 17 N 1.31623 * 119.99717 * 156.16070 * 16 14 13 18 18 Si 1.86804 * 120.00239 * 336.16627 * 16 14 13 19 19 H 1.48498 * 109.47104 * 95.02332 * 18 16 14 20 20 H 1.48500 * 109.46814 * 215.02403 * 18 16 14 21 21 H 1.48497 * 109.47054 * 335.02135 * 18 16 14 22 22 C 1.44454 * 122.97304 * 318.79201 * 13 12 10 23 23 C 1.54873 * 109.32978 * 88.91435 * 22 13 12 24 24 C 1.47683 * 109.68284 * 290.10363 * 23 22 13 25 25 O 1.40531 * 109.40514 * 64.59966 * 10 9 8 26 26 C 1.52997 * 109.47046 * 104.96061 * 4 3 2 27 27 C 1.53005 * 109.46853 * 297.58375 * 26 4 3 28 28 C 1.53002 * 109.47101 * 57.58313 * 26 4 3 29 29 H 1.09009 * 109.46875 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47097 * 299.99544 * 1 2 3 31 31 H 1.08997 * 109.47190 * 60.00415 * 1 2 3 32 32 H 1.08998 * 109.47738 * 240.00064 * 2 1 3 33 33 H 1.09007 * 109.47131 * 119.99596 * 2 1 3 34 34 H 0.96996 * 119.99750 * 359.97438 * 8 6 4 35 35 H 1.08997 * 109.47491 * 300.00143 * 9 8 6 36 36 H 1.09003 * 109.46891 * 60.00184 * 9 8 6 37 37 H 1.08998 * 109.22608 * 320.80419 * 12 10 9 38 38 H 1.08997 * 109.23013 * 80.21779 * 12 10 9 39 39 H 0.96998 * 119.99964 * 180.02562 * 17 16 14 40 40 H 1.08997 * 109.49473 * 208.87087 * 22 13 12 41 41 H 1.09000 * 109.49538 * 328.95750 * 22 13 12 42 42 H 1.09009 * 109.43424 * 50.16665 * 23 22 13 43 43 H 1.09003 * 109.43581 * 170.07493 * 23 22 13 44 44 H 1.09001 * 108.64798 * 181.88039 * 24 23 22 45 45 H 1.09002 * 108.64086 * 299.72182 * 24 23 22 46 46 H 1.08998 * 109.46968 * 177.58304 * 26 4 3 47 47 H 1.08996 * 109.47293 * 59.35528 * 27 26 4 48 48 H 1.09001 * 109.46253 * 179.35124 * 27 26 4 49 49 H 1.08999 * 109.47240 * 299.34712 * 27 26 4 50 50 H 1.09000 * 109.46687 * 179.97438 * 28 26 4 51 51 H 1.08998 * 109.47202 * 299.99848 * 28 26 4 52 52 H 1.08998 * 109.46923 * 60.00391 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4302 1.4604 -0.0415 5 1 3.8784 0.4971 0.2016 6 6 3.8817 2.4917 0.9604 7 8 3.0613 3.1336 1.5814 8 7 5.1971 2.6967 1.1703 9 6 5.6359 3.6995 2.1438 10 6 7.1649 3.7324 2.1883 11 1 7.5428 2.7316 2.3973 12 6 7.6249 4.6968 3.3014 13 7 9.0218 5.1342 3.0710 14 6 9.3412 6.4468 3.2955 15 1 8.6529 7.2271 3.0063 16 6 10.5497 6.7742 3.8949 17 7 11.0790 7.9637 3.7019 18 14 11.4247 5.5266 4.9754 19 1 12.4309 4.7916 4.1676 20 1 12.1048 6.2300 6.0925 21 1 10.4340 4.5667 5.5251 22 6 10.0617 4.2388 2.6198 23 6 10.0841 4.2180 1.0714 24 6 8.8773 3.5333 0.5656 25 8 7.6589 4.1663 0.9462 26 6 3.8673 1.8868 -1.4444 27 6 3.4618 0.8108 -2.4538 28 6 3.1905 3.2095 -1.8095 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 5.8532 2.1802 0.6767 35 1 5.2602 4.6797 1.8503 36 1 5.2489 3.4424 3.1299 37 1 6.9724 5.5698 3.3122 38 1 7.5622 4.1898 4.2642 39 1 11.9236 8.1925 4.1205 40 1 11.0260 4.5839 2.9929 41 1 9.8646 3.2343 2.9943 42 1 10.1053 5.2409 0.6952 43 1 10.9723 3.6871 0.7286 44 1 8.9266 3.4985 -0.5227 45 1 8.8723 2.5111 0.9442 46 1 4.9495 2.0146 -1.4646 47 1 2.3808 0.6748 -2.4254 48 1 3.7630 1.1199 -3.4548 49 1 3.9531 -0.1287 -2.2005 50 1 3.5022 3.5134 -2.8087 51 1 2.1082 3.0816 -1.7893 52 1 3.4793 3.9760 -1.0903 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149721533.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:17 Heat of formation + Delta-G solvation = -108.314806 kcal Electronic energy + Delta-G solvation = -29941.306923 eV Core-core repulsion = 25941.873923 eV Total energy + Delta-G solvation = -3999.433001 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.36538 -39.15823 -37.98633 -35.45183 -35.15324 -34.64618 -32.43636 -31.70369 -31.45420 -29.36051 -27.61249 -27.33015 -25.84660 -25.03749 -23.08353 -22.49669 -21.37701 -21.18317 -20.33155 -19.79950 -17.72668 -17.02513 -16.66642 -16.50377 -16.45625 -15.82271 -15.66200 -15.03229 -14.82389 -14.63689 -14.50015 -14.06520 -13.80221 -13.59411 -13.32830 -13.22161 -12.76180 -12.68213 -12.58717 -12.56493 -12.38040 -12.33065 -12.29158 -12.02091 -11.75081 -11.69845 -11.39809 -11.24074 -11.11592 -10.98023 -10.94254 -10.54815 -10.36867 -10.19607 -10.14165 -9.85673 -9.64569 -9.45285 -9.06475 -9.01160 -8.50579 -6.79892 -6.01002 -3.42414 2.56854 2.79161 3.27740 3.44325 3.49247 3.64753 4.05751 4.38093 4.44677 4.50224 4.59072 4.72933 4.77880 4.82291 4.89082 5.03076 5.09039 5.20607 5.23272 5.26902 5.30684 5.34319 5.44135 5.45465 5.49636 5.55923 5.59857 5.68598 5.72260 5.74368 5.81468 5.83138 5.83957 5.98456 6.02456 6.08091 6.20661 6.21519 6.36384 6.39461 6.51336 6.63674 6.71514 6.82075 6.98765 7.46338 7.73795 8.08453 8.20563 8.39767 9.02181 9.70779 10.06727 11.14547 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.024647 B = 0.002613 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.781109 B =10714.585012 C =11087.345606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.051 3.949 3 O -0.350 6.350 4 C 0.079 3.921 5 H 0.084 0.916 6 C 0.508 3.492 7 O -0.521 6.521 8 N -0.721 5.721 9 C 0.124 3.876 10 C 0.066 3.934 11 H 0.054 0.946 12 C 0.131 3.869 13 N -0.597 5.597 14 C -0.269 4.269 15 H 0.077 0.923 16 C 0.037 3.963 17 N -0.896 5.896 18 Si 0.875 3.125 19 H -0.287 1.287 20 H -0.300 1.300 21 H -0.271 1.271 22 C 0.145 3.855 23 C -0.180 4.180 24 C 0.079 3.921 25 O -0.355 6.355 26 C -0.106 4.106 27 C -0.148 4.148 28 C -0.143 4.143 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.047 0.953 34 H 0.399 0.601 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.029 0.971 39 H 0.263 0.737 40 H 0.058 0.942 41 H 0.030 0.970 42 H 0.081 0.919 43 H 0.060 0.940 44 H 0.071 0.929 45 H 0.034 0.966 46 H 0.084 0.916 47 H 0.062 0.938 48 H 0.061 0.939 49 H 0.053 0.947 50 H 0.055 0.945 51 H 0.065 0.935 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.934 -19.905 -11.168 26.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.268 6.268 4 C 0.017 3.983 5 H 0.102 0.898 6 C 0.293 3.707 7 O -0.396 6.396 8 N -0.374 5.374 9 C 0.000 4.000 10 C 0.005 3.995 11 H 0.072 0.928 12 C 0.005 3.995 13 N -0.319 5.319 14 C -0.398 4.398 15 H 0.094 0.906 16 C -0.163 4.163 17 N -0.537 5.537 18 Si 0.704 3.296 19 H -0.215 1.215 20 H -0.228 1.228 21 H -0.196 1.196 22 C 0.019 3.981 23 C -0.220 4.220 24 C 0.002 3.998 25 O -0.273 6.273 26 C -0.125 4.125 27 C -0.206 4.206 28 C -0.200 4.200 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.232 0.768 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.047 0.953 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.048 0.952 42 H 0.100 0.900 43 H 0.078 0.922 44 H 0.089 0.911 45 H 0.052 0.948 46 H 0.102 0.898 47 H 0.081 0.919 48 H 0.080 0.920 49 H 0.072 0.928 50 H 0.074 0.926 51 H 0.084 0.916 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.663 -19.012 -10.755 26.309 hybrid contribution 1.470 -1.269 0.557 2.020 sum -13.193 -20.282 -10.198 26.257 Atomic orbital electron populations 1.21720 0.93481 1.02126 1.03428 1.22701 0.96000 0.83838 1.00056 1.88048 1.18147 1.25958 1.94601 1.21990 0.83933 0.97976 0.94419 0.89796 1.20524 0.82516 0.84378 0.83305 1.90724 1.52530 1.47982 1.48327 1.45891 1.06671 1.41284 1.43587 1.21567 0.93270 0.92662 0.92474 1.22793 0.91784 0.97895 0.86983 0.92760 1.21868 0.87470 0.96927 0.93285 1.43793 1.03666 1.07945 1.76530 1.18804 1.04456 0.81916 1.34639 0.90584 1.25504 0.97583 0.95445 0.97798 1.69899 1.18475 1.21697 1.43654 0.86979 0.79266 0.81889 0.81424 1.21460 1.22813 1.19557 1.21093 0.93214 0.92423 0.91394 1.22172 0.96484 1.02769 1.00569 1.21354 0.85561 0.94084 0.98765 1.87453 1.37940 1.66971 1.34975 1.21518 1.00772 0.97230 0.92939 1.21887 1.02049 0.97701 0.98925 1.21728 1.01503 0.95599 1.01197 0.91146 0.91604 0.91794 0.92969 0.93445 0.76764 0.90222 0.90196 0.91336 0.95277 0.92717 0.92386 0.95208 0.90042 0.92177 0.91071 0.94777 0.89817 0.91906 0.91966 0.92804 0.92566 0.91636 0.92455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 10.28 37.16 0.38 -0.67 16 2 C 0.05 0.40 5.96 37.16 0.22 0.62 16 3 O -0.35 -3.96 8.36 -55.10 -0.46 -4.42 16 4 C 0.08 0.79 2.38 -27.88 -0.07 0.72 16 5 H 0.08 0.63 7.66 -51.93 -0.40 0.23 16 6 C 0.51 6.76 6.03 -10.98 -0.07 6.69 16 7 O -0.52 -9.25 16.51 -14.31 -0.24 -9.48 16 8 N -0.72 -8.59 5.42 -60.30 -0.33 -8.91 16 9 C 0.12 1.74 5.24 -4.05 -0.02 1.72 16 10 C 0.07 1.01 2.35 -26.05 -0.06 0.95 16 11 H 0.05 0.75 7.20 -51.93 -0.37 0.38 16 12 C 0.13 2.53 6.12 -2.44 -0.01 2.51 16 13 N -0.60 -13.88 2.13 -171.49 -0.36 -14.24 16 14 C -0.27 -7.48 9.68 -15.06 -0.15 -7.62 16 15 H 0.08 2.32 8.06 -52.49 -0.42 1.89 16 16 C 0.04 1.07 5.20 -17.43 -0.09 0.98 16 17 N -0.90 -27.21 13.97 55.49 0.78 -26.44 16 18 Si 0.87 21.88 25.27 -169.99 -4.29 17.59 16 19 H -0.29 -6.92 6.67 56.52 0.38 -6.54 16 20 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 21 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 22 C 0.15 3.06 4.47 -4.15 -0.02 3.04 16 23 C -0.18 -3.23 6.03 -28.31 -0.17 -3.40 16 24 C 0.08 1.18 6.04 34.59 0.21 1.39 16 25 O -0.36 -5.98 9.76 -34.11 -0.33 -6.32 16 26 C -0.11 -0.91 2.75 -90.62 -0.25 -1.16 16 27 C -0.15 -0.99 8.29 37.16 0.31 -0.68 16 28 C -0.14 -1.49 8.81 37.16 0.33 -1.17 16 29 H 0.07 0.35 8.14 -51.92 -0.42 -0.07 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.32 6.39 -51.93 -0.33 -0.01 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.40 3.80 8.19 -40.82 -0.33 3.47 16 35 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.07 1.38 7.75 -51.93 -0.40 0.97 16 38 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 40 H 0.06 1.36 3.54 -51.93 -0.18 1.17 16 41 H 0.03 0.56 8.10 -51.93 -0.42 0.14 16 42 H 0.08 1.73 8.14 -51.92 -0.42 1.30 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.03 0.43 7.27 -51.93 -0.38 0.05 16 46 H 0.08 0.66 7.84 -51.93 -0.41 0.25 16 47 H 0.06 0.44 6.52 -51.93 -0.34 0.10 16 48 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 50 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 51 H 0.06 0.73 7.62 -51.93 -0.40 0.33 16 52 H 0.06 0.73 7.29 -51.93 -0.38 0.35 16 LS Contribution 399.53 15.07 6.02 6.02 Total: -1.00 -33.85 399.53 -8.10 -41.95 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -9.42 Total: 0.35 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: 0.54 Total: 3.91 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: 0.08 Total: -49.59 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -1.03 Total: -20.22 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.29 Total: 17.59 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.85 -8.10 -41.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149721533.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.369 kcal (2) G-P(sol) polarization free energy of solvation -33.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds