Wall clock time and date at job start Tue Mar 31 2020 04:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42901 * 109.47397 * 2 1 4 4 C 1.42900 * 114.00406 * 177.53701 * 3 2 1 5 5 H 1.09004 * 109.46946 * 15.52684 * 4 3 2 6 6 C 1.50704 * 109.47262 * 135.52968 * 4 3 2 7 7 O 1.21273 * 119.99804 * 9.23728 * 6 4 3 8 8 N 1.34777 * 119.99833 * 189.24318 * 6 4 3 9 9 C 1.46496 * 119.99639 * 174.75909 * 8 6 4 10 10 C 1.53001 * 109.46798 * 179.97438 * 9 8 6 11 11 H 1.08994 * 108.57398 * 62.06045 * 10 9 8 12 12 C 1.46928 * 108.61984 * 180.02562 * 10 9 8 13 13 N 1.50107 * 106.77516 * 177.92177 * 12 10 9 14 14 C 1.36943 * 120.63865 * 111.37484 * 13 12 10 15 15 H 1.08002 * 120.00257 * 150.66356 * 14 13 12 16 16 C 1.38808 * 119.99532 * 330.66609 * 14 13 12 17 17 N 1.31626 * 120.00050 * 344.90349 * 16 14 13 18 18 Si 1.86798 * 120.00067 * 164.90592 * 16 14 13 19 19 H 1.48491 * 109.47360 * 89.99716 * 18 16 14 20 20 H 1.48503 * 109.47211 * 209.99975 * 18 16 14 21 21 H 1.48505 * 109.47016 * 329.99506 * 18 16 14 22 22 C 1.43425 * 118.72929 * 291.34381 * 13 12 10 23 23 C 1.55333 * 116.23640 * 89.35796 * 22 13 12 24 24 C 1.55184 * 108.87369 * 319.46231 * 23 22 13 25 25 O 1.39638 * 110.56918 * 322.14418 * 24 23 22 26 26 C 1.52997 * 109.47252 * 255.52937 * 4 3 2 27 27 C 1.53004 * 109.46906 * 302.66767 * 26 4 3 28 28 C 1.53004 * 109.47179 * 62.66284 * 26 4 3 29 29 H 1.09002 * 109.47104 * 299.99781 * 1 2 3 30 30 H 1.08998 * 109.47516 * 59.99448 * 1 2 3 31 31 H 1.09004 * 109.47196 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47104 * 240.00219 * 2 1 3 33 33 H 1.09001 * 109.47450 * 120.00032 * 2 1 3 34 34 H 0.97002 * 120.00052 * 354.75906 * 8 6 4 35 35 H 1.08991 * 109.47501 * 299.99780 * 9 8 6 36 36 H 1.09004 * 109.46900 * 60.00523 * 9 8 6 37 37 H 1.08997 * 109.98816 * 297.23713 * 12 10 9 38 38 H 1.09002 * 109.99132 * 58.60371 * 12 10 9 39 39 H 0.97002 * 119.99986 * 180.02562 * 17 16 14 40 40 H 1.09000 * 108.13238 * 211.11276 * 22 13 12 41 41 H 1.08997 * 108.13223 * 327.81663 * 22 13 12 42 42 H 1.09003 * 109.57272 * 79.28398 * 23 22 13 43 43 H 1.09007 * 109.57041 * 199.64393 * 23 22 13 44 44 H 1.09005 * 109.25682 * 82.42977 * 24 23 22 45 45 H 1.09003 * 109.25701 * 201.86283 * 24 23 22 46 46 H 1.08993 * 109.47536 * 182.66678 * 26 4 3 47 47 H 1.08993 * 109.47299 * 63.41049 * 27 26 4 48 48 H 1.09006 * 109.46791 * 183.40858 * 27 26 4 49 49 H 1.09000 * 109.47339 * 303.40448 * 27 26 4 50 50 H 1.09006 * 109.46663 * 56.65497 * 28 26 4 51 51 H 1.08997 * 109.47423 * 176.65196 * 28 26 4 52 52 H 1.08997 * 109.47175 * 296.65582 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4297 1.4605 0.0561 5 1 3.8806 0.4984 -0.1872 6 6 3.8907 2.4967 -0.9363 7 8 3.0789 3.1979 -1.5020 8 7 5.2052 2.6440 -1.1952 9 6 5.6463 3.5693 -2.2418 10 6 7.1736 3.5479 -2.3307 11 1 7.4912 2.5429 -2.6085 12 6 7.5954 4.4815 -3.3840 13 7 9.0963 4.4665 -3.4006 14 6 9.7771 3.9281 -4.4598 15 1 10.7548 4.3051 -4.7212 16 6 9.2105 2.8977 -5.1974 17 7 8.1759 2.2385 -4.7204 18 14 9.9163 2.4467 -6.8671 19 1 10.9685 1.4128 -6.6969 20 1 8.8347 1.9141 -7.7343 21 1 10.5066 3.6546 -7.4977 22 6 9.8037 5.0275 -2.2862 23 6 10.1234 4.0566 -1.1166 24 6 8.8962 3.1375 -0.8775 25 8 7.7081 3.8515 -1.0464 26 6 3.8528 1.8802 1.4652 27 6 3.1672 3.1979 1.8323 28 6 3.4433 0.7966 2.4647 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.8591 2.1373 -0.6886 35 1 5.2221 3.2649 -3.1985 36 1 5.3110 4.5779 -2.0000 37 1 7.2087 4.1538 -4.3490 38 1 7.2352 5.4852 -3.1583 39 1 7.7802 1.5182 -5.2357 40 1 10.7446 5.4375 -2.6534 41 1 9.2106 5.8504 -1.8874 42 1 10.9907 3.4484 -1.3736 43 1 10.3321 4.6297 -0.2131 44 1 8.9227 2.3105 -1.5871 45 1 8.9362 2.7411 0.1371 46 1 4.9342 2.0126 1.4956 47 1 2.0877 3.0500 1.8611 48 1 3.5149 3.5280 2.8113 49 1 3.4106 3.9543 1.0863 50 1 3.8842 -0.1556 2.1691 51 1 3.7970 1.0674 3.4595 52 1 2.3572 0.7057 2.4774 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149721534.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:20 Heat of formation + Delta-G solvation = -109.941832 kcal Electronic energy + Delta-G solvation = -30452.751907 eV Core-core repulsion = 26453.248353 eV Total energy + Delta-G solvation = -3999.503554 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.09502 -38.99955 -37.71546 -35.02224 -34.93262 -34.38594 -32.13726 -31.31898 -31.16674 -28.84105 -27.45092 -27.17221 -25.35301 -24.94597 -22.92016 -22.54688 -21.07611 -20.74151 -19.80061 -19.56255 -17.48334 -16.95250 -16.78361 -16.25742 -15.90135 -15.31877 -14.92926 -14.83674 -14.51321 -14.38116 -14.32759 -13.91930 -13.79791 -13.27743 -13.14859 -12.97926 -12.59589 -12.51768 -12.43916 -12.26381 -12.18719 -12.09961 -11.91855 -11.52910 -11.39970 -11.25037 -11.22757 -11.05329 -10.85769 -10.80787 -10.74859 -10.50461 -10.16020 -10.03149 -9.94267 -9.68263 -9.49493 -9.18500 -8.79770 -8.63439 -8.52418 -6.76430 -5.94174 -3.38736 2.88443 3.08042 3.30447 3.38679 3.41026 3.92682 4.40827 4.58514 4.64559 4.73122 4.83514 4.89237 5.00329 5.09864 5.19291 5.23929 5.27642 5.29266 5.43563 5.50063 5.59255 5.70856 5.72839 5.74948 5.81971 5.82500 5.92333 5.94620 5.96544 6.03007 6.13027 6.15377 6.32924 6.34065 6.42102 6.49255 6.58245 6.67711 6.71447 6.82039 6.91458 6.95426 7.05100 7.13069 7.29224 7.70657 7.85689 8.14190 8.33909 8.53944 9.05991 9.72319 10.29226 11.14511 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.015595 B = 0.003232 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.020535 B = 8660.425608 C = 9684.110707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 O -0.351 6.351 4 C 0.078 3.922 5 H 0.084 0.916 6 C 0.507 3.493 7 O -0.528 6.528 8 N -0.713 5.713 9 C 0.122 3.878 10 C 0.058 3.942 11 H 0.112 0.888 12 C 0.146 3.854 13 N -0.587 5.587 14 C -0.250 4.250 15 H 0.067 0.933 16 C 0.005 3.995 17 N -0.909 5.909 18 Si 0.905 3.095 19 H -0.288 1.288 20 H -0.289 1.289 21 H -0.280 1.280 22 C 0.161 3.839 23 C -0.171 4.171 24 C 0.067 3.933 25 O -0.369 6.369 26 C -0.106 4.106 27 C -0.141 4.141 28 C -0.147 4.147 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.048 0.952 33 H 0.051 0.949 34 H 0.399 0.601 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.098 0.902 38 H 0.019 0.981 39 H 0.255 0.745 40 H 0.032 0.968 41 H 0.031 0.969 42 H 0.056 0.944 43 H 0.049 0.951 44 H 0.064 0.936 45 H 0.050 0.950 46 H 0.084 0.916 47 H 0.063 0.937 48 H 0.053 0.947 49 H 0.057 0.943 50 H 0.053 0.947 51 H 0.060 0.940 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.537 -5.435 13.065 16.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.268 6.268 4 C 0.016 3.984 5 H 0.101 0.899 6 C 0.291 3.709 7 O -0.404 6.404 8 N -0.365 5.365 9 C -0.002 4.002 10 C 0.000 4.000 11 H 0.129 0.871 12 C 0.022 3.978 13 N -0.308 5.308 14 C -0.379 4.379 15 H 0.084 0.916 16 C -0.193 4.193 17 N -0.554 5.554 18 Si 0.735 3.265 19 H -0.215 1.215 20 H -0.215 1.215 21 H -0.205 1.205 22 C 0.033 3.967 23 C -0.213 4.213 24 C -0.011 4.011 25 O -0.288 6.288 26 C -0.125 4.125 27 C -0.198 4.198 28 C -0.204 4.204 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.233 0.767 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.116 0.884 38 H 0.037 0.963 39 H 0.065 0.935 40 H 0.051 0.949 41 H 0.049 0.951 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.082 0.918 45 H 0.068 0.932 46 H 0.102 0.898 47 H 0.082 0.918 48 H 0.072 0.928 49 H 0.076 0.924 50 H 0.072 0.928 51 H 0.079 0.921 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.436 -4.744 12.632 16.466 hybrid contribution 1.107 -1.091 -0.741 1.721 sum -8.329 -5.835 11.892 15.647 Atomic orbital electron populations 1.21712 0.93625 1.02019 1.03310 1.22685 0.95854 0.84027 1.00099 1.88032 1.18412 1.25785 1.94606 1.22022 0.83691 0.98200 0.94461 0.89855 1.20460 0.82773 0.84709 0.82953 1.90689 1.53278 1.45202 1.51226 1.45870 1.06421 1.45270 1.38950 1.21704 0.95327 0.92820 0.90306 1.22263 0.89589 1.04133 0.84028 0.87079 1.20659 0.84047 0.94335 0.98810 1.44038 1.00603 1.69533 1.16603 1.19227 1.02067 1.11592 1.05031 0.91564 1.25026 0.98702 0.95642 0.99886 1.69799 1.25526 1.22922 1.37125 0.86252 0.78095 0.78194 0.83928 1.21473 1.21527 1.20522 1.20375 0.95372 0.93558 0.87442 1.23572 0.97957 1.00114 0.99627 1.22343 0.85279 0.94457 0.98979 1.87506 1.37573 1.69338 1.34377 1.21509 1.00853 0.97088 0.93054 1.21713 1.01257 0.95858 1.01004 1.21879 1.01961 0.97731 0.98863 0.91909 0.91644 0.91228 0.93394 0.93055 0.76693 0.90562 0.92042 0.88384 0.96267 0.93470 0.94940 0.95098 0.92533 0.93249 0.91805 0.93218 0.89784 0.91795 0.92813 0.92385 0.92780 0.92133 0.92008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.28 37.15 0.38 -0.92 16 2 C 0.05 0.50 5.99 37.15 0.22 0.73 16 3 O -0.35 -4.75 8.46 -54.97 -0.47 -5.21 16 4 C 0.08 0.99 2.38 -27.88 -0.07 0.93 16 5 H 0.08 0.89 7.67 -51.93 -0.40 0.50 16 6 C 0.51 8.38 5.95 -10.98 -0.07 8.31 16 7 O -0.53 -10.90 16.53 -14.18 -0.23 -11.13 16 8 N -0.71 -11.43 5.39 -60.30 -0.33 -11.76 16 9 C 0.12 2.27 5.27 -4.04 -0.02 2.25 16 10 C 0.06 1.17 2.00 -29.64 -0.06 1.11 16 11 H 0.11 2.50 4.99 -51.93 -0.26 2.24 16 12 C 0.15 3.29 4.70 -4.93 -0.02 3.27 16 13 N -0.59 -13.97 2.59 -174.50 -0.45 -14.42 16 14 C -0.25 -6.44 9.59 -15.06 -0.14 -6.59 16 15 H 0.07 1.72 7.87 -52.49 -0.41 1.30 16 16 C 0.01 0.14 4.98 -17.43 -0.09 0.05 16 17 N -0.91 -23.37 9.47 55.49 0.53 -22.84 16 18 Si 0.91 20.67 29.58 -169.99 -5.03 15.64 16 19 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 C 0.16 3.39 5.33 -4.43 -0.02 3.37 16 23 C -0.17 -3.17 6.75 -24.34 -0.16 -3.33 16 24 C 0.07 1.23 6.38 38.31 0.24 1.48 16 25 O -0.37 -7.09 9.34 -31.93 -0.30 -7.39 16 26 C -0.11 -1.14 2.77 -90.62 -0.25 -1.39 16 27 C -0.14 -1.69 8.81 37.16 0.33 -1.36 16 28 C -0.15 -1.24 8.09 37.16 0.30 -0.94 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.42 6.42 -51.93 -0.33 0.09 16 34 H 0.40 5.67 8.10 -40.82 -0.33 5.34 16 35 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.10 2.41 6.28 -51.93 -0.33 2.09 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.26 6.49 8.31 -40.82 -0.34 6.15 16 40 H 0.03 0.67 7.98 -51.93 -0.41 0.26 16 41 H 0.03 0.64 7.98 -51.93 -0.41 0.22 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 44 H 0.06 1.32 6.66 -51.93 -0.35 0.98 16 45 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.08 0.86 8.05 -51.93 -0.42 0.45 16 47 H 0.06 0.79 7.72 -51.93 -0.40 0.39 16 48 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.06 0.84 7.19 -51.93 -0.37 0.46 16 50 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 51 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 52 H 0.06 0.53 6.83 -51.93 -0.35 0.18 16 LS Contribution 399.85 15.07 6.03 6.03 Total: -1.00 -29.14 399.85 -9.09 -38.23 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -9.41 Total: 5.91 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: 0.57 Total: 6.95 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: -0.25 Total: -49.02 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -1.00 Total: -23.74 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.64 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -29.14 -9.09 -38.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149721534.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.708 kcal (2) G-P(sol) polarization free energy of solvation -29.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds